Wall clock time and date at job start Tue Mar 31 2020 06:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.47160 * 2 1 4 4 S 1.81005 * 109.47287 * 119.99788 * 2 1 3 5 5 C 1.76197 * 100.00169 * 295.00039 * 4 2 1 6 6 N 1.28544 * 125.01450 * 0.02562 * 5 4 2 7 7 C 1.44597 * 119.82394 * 179.97438 * 6 5 4 8 8 C 1.53665 * 111.24826 * 0.02562 * 7 6 5 9 9 S 1.76755 * 125.01900 * 179.97438 * 5 4 2 10 10 C 1.50702 * 109.46891 * 239.99891 * 2 1 3 11 11 O 1.21283 * 119.99955 * 264.99676 * 10 2 1 12 12 N 1.34772 * 119.99875 * 85.00078 * 10 2 1 13 13 C 1.46505 * 119.99974 * 359.97438 * 12 10 2 14 14 C 1.46500 * 119.99970 * 179.97438 * 12 10 2 15 15 C 1.50699 * 109.46845 * 90.00385 * 14 12 10 16 16 H 1.08002 * 120.00377 * 359.97438 * 15 14 12 17 17 C 1.37881 * 120.00098 * 180.02562 * 15 14 12 18 18 N 1.31515 * 120.00014 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00097 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47508 * 59.99682 * 19 17 15 21 21 H 1.48500 * 109.46938 * 179.97438 * 19 17 15 22 22 H 1.48507 * 109.47125 * 299.99498 * 19 17 15 23 23 H 1.08995 * 109.46876 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46727 * 299.99997 * 1 2 3 25 25 H 1.08996 * 109.47052 * 59.99932 * 1 2 3 26 26 H 1.08998 * 109.12906 * 120.47145 * 7 6 5 27 27 H 1.09001 * 109.13387 * 239.52664 * 7 6 5 28 28 H 1.09003 * 110.65189 * 241.55232 * 8 7 6 29 29 H 1.09000 * 110.65899 * 118.44509 * 8 7 6 30 30 H 1.09000 * 109.47176 * 90.00489 * 13 12 10 31 31 H 1.08999 * 109.46743 * 210.00165 * 13 12 10 32 32 H 1.08995 * 109.47096 * 330.00114 * 13 12 10 33 33 H 1.09001 * 109.47066 * 209.99690 * 14 12 10 34 34 H 1.08996 * 109.47436 * 330.00477 * 14 12 10 35 35 H 0.97000 * 120.00335 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 16 2.1334 -0.8532 1.4779 5 6 1.5441 0.2423 2.7257 6 7 0.8785 1.3200 2.5067 7 6 0.4484 2.1381 3.6187 8 6 0.8938 1.5340 4.9596 9 16 1.7796 0.0210 4.4635 10 6 2.0323 -0.7105 -1.2305 11 8 2.3208 -1.8872 -1.1760 12 7 2.1610 -0.0381 -2.3914 13 6 1.8121 1.3832 -2.4573 14 6 2.6498 -0.7286 -3.5875 15 6 1.4831 -1.3089 -4.3445 16 1 0.4781 -1.1770 -3.9718 17 6 1.6988 -2.0092 -5.5125 18 7 2.9226 -2.1703 -5.9661 19 14 0.2526 -2.7291 -6.4504 20 1 -0.6700 -1.6370 -6.8521 21 1 0.7481 -3.4289 -7.6629 22 1 -0.4699 -3.6933 -5.5823 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 0.8777 3.1346 3.5161 27 1 -0.6388 2.2163 3.6053 28 1 0.0295 1.2878 5.5764 29 1 1.5614 2.2162 5.4859 30 1 2.6906 1.9843 -2.2228 31 1 1.4635 1.6255 -3.4612 32 1 1.0226 1.5973 -1.7370 33 1 3.1802 -0.0207 -4.2244 34 1 3.3268 -1.5305 -3.2930 35 1 3.0744 -2.6627 -6.7880 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103412701.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:19 Heat of formation + Delta-G solvation = -6.296425 kcal Electronic energy + Delta-G solvation = -18397.640897 eV Core-core repulsion = 15455.772677 eV Total energy + Delta-G solvation = -2941.868220 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 288.071 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.19538 -37.91713 -34.94376 -33.30171 -32.30197 -31.06218 -27.83290 -26.03901 -25.55288 -24.40417 -22.49964 -21.64950 -19.32953 -18.04424 -16.69424 -16.55830 -16.23124 -16.11363 -15.35440 -14.77466 -14.59994 -14.30189 -14.00355 -13.60235 -13.20400 -12.98885 -12.79823 -12.23286 -12.16337 -11.98293 -11.94145 -11.75960 -11.51726 -11.28724 -11.21134 -10.93063 -10.60150 -10.33633 -10.18058 -9.68893 -9.66220 -9.07429 -8.45449 -8.21978 -7.91711 -7.74057 -6.06634 -4.11836 0.69048 1.31368 1.54706 1.69110 2.02641 3.23011 3.31252 3.35792 3.39737 3.84165 4.01474 4.35533 4.42415 4.54805 4.85327 4.98423 5.00021 5.17587 5.20041 5.21172 5.28158 5.56008 5.77218 5.85240 5.89058 6.13928 6.28826 6.95114 6.99353 7.37620 7.44207 7.88553 8.18718 8.25961 8.79387 8.95778 9.53162 11.01532 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.036960 B = 0.003608 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.388128 B = 7758.604732 C = 7883.925372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.111 4.111 3 H 0.117 0.883 4 S 0.076 5.924 5 C 0.162 3.838 6 N -0.528 5.528 7 C 0.043 3.957 8 C -0.119 4.119 9 S -0.160 6.160 10 C 0.524 3.476 11 O -0.526 6.526 12 N -0.591 5.591 13 C 0.077 3.923 14 C 0.246 3.754 15 C -0.529 4.529 16 H 0.058 0.942 17 C 0.062 3.938 18 N -0.894 5.894 19 Si 0.899 3.101 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.276 1.276 23 H 0.070 0.930 24 H 0.081 0.919 25 H 0.072 0.928 26 H 0.102 0.898 27 H 0.102 0.898 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.047 0.953 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.035 0.965 34 H 0.046 0.954 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.462 11.077 19.172 22.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.245 4.245 3 H 0.135 0.865 4 S 0.307 5.693 5 C -0.244 4.244 6 N -0.250 5.250 7 C -0.092 4.092 8 C -0.271 4.271 9 S 0.066 5.934 10 C 0.307 3.693 11 O -0.403 6.403 12 N -0.323 5.323 13 C -0.068 4.068 14 C 0.127 3.873 15 C -0.568 4.568 16 H 0.076 0.924 17 C -0.140 4.140 18 N -0.533 5.533 19 Si 0.726 3.274 20 H -0.202 1.202 21 H -0.211 1.211 22 H -0.201 1.201 23 H 0.089 0.911 24 H 0.099 0.901 25 H 0.091 0.909 26 H 0.120 0.880 27 H 0.120 0.880 28 H 0.127 0.873 29 H 0.127 0.873 30 H 0.066 0.934 31 H 0.097 0.903 32 H 0.079 0.921 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.370 9.053 19.105 21.408 hybrid contribution -1.932 1.662 -0.614 2.621 sum -5.302 10.715 18.491 22.019 Atomic orbital electron populations 1.21973 0.90242 1.03887 1.03863 1.23748 1.02110 1.03873 0.94761 0.86500 1.86688 1.65578 1.24717 0.92330 1.29470 0.97421 0.98030 0.99434 1.70644 1.16368 1.06315 1.31647 1.22848 1.02942 0.99218 0.84213 1.24922 1.03464 0.96769 1.01917 1.86765 1.70796 1.33159 1.02634 1.19382 0.79380 0.87038 0.83505 1.90723 1.50081 1.15096 1.84409 1.48061 1.63583 1.09962 1.10669 1.21778 0.99453 0.82157 1.03363 1.19365 0.95373 0.92822 0.79739 1.21375 0.93353 1.34800 1.07277 0.92422 1.24933 0.95969 0.95849 0.97273 1.69919 1.19653 1.41366 1.22341 0.86546 0.82376 0.79351 0.79082 1.20246 1.21138 1.20105 0.91123 0.90072 0.90892 0.88044 0.88041 0.87276 0.87276 0.93449 0.90341 0.92069 0.94657 0.93615 0.92583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 8.77 37.16 0.33 -1.69 16 2 C -0.11 -1.76 1.80 -27.88 -0.05 -1.81 16 3 H 0.12 1.66 6.91 -51.91 -0.36 1.30 16 4 S 0.08 1.17 21.06 -107.50 -2.26 -1.09 16 5 C 0.16 2.11 7.45 51.39 0.38 2.49 16 6 N -0.53 -6.25 8.18 -61.40 -0.50 -6.76 16 7 C 0.04 0.35 7.54 -4.71 -0.04 0.32 16 8 C -0.12 -0.85 7.48 37.50 0.28 -0.57 16 9 S -0.16 -1.79 23.28 -107.50 -2.50 -4.29 16 10 C 0.52 10.91 6.79 -10.99 -0.07 10.84 16 11 O -0.53 -13.18 15.72 5.55 0.09 -13.09 16 12 N -0.59 -12.44 2.86 -182.95 -0.52 -12.97 16 13 C 0.08 1.20 9.87 59.85 0.59 1.79 16 14 C 0.25 6.38 5.16 -5.19 -0.03 6.35 16 15 C -0.53 -14.88 9.39 -34.44 -0.32 -15.20 16 16 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 17 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 18 N -0.89 -26.44 13.29 55.43 0.74 -25.70 16 19 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 24 H 0.08 1.05 5.88 -51.93 -0.31 0.75 16 25 H 0.07 1.00 6.84 -51.93 -0.36 0.65 16 26 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 32 H 0.06 0.81 5.17 -51.93 -0.27 0.54 16 33 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 34 H 0.05 1.34 7.42 -51.93 -0.39 0.95 16 35 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 318.28 15.07 4.80 4.80 Total: -1.00 -32.61 318.28 -8.81 -41.42 By element: Atomic # 1 Polarization: 1.36 SS G_CDS: -4.59 Total: -3.24 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: 0.97 Total: 4.18 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: -0.29 Total: -45.42 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.09 Total: -13.09 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: -0.62 SS G_CDS: -4.77 Total: -5.38 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.61 -8.81 -41.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103412701.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.126 kcal (2) G-P(sol) polarization free energy of solvation -32.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds