Wall clock time and date at job start Tue Mar 31 2020 06:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.47160 * 2 1 4 4 S 1.81005 * 109.47287 * 119.99788 * 2 1 3 5 5 C 1.76197 * 100.00169 * 295.00039 * 4 2 1 6 6 N 1.28544 * 125.01450 * 0.02562 * 5 4 2 7 7 C 1.44597 * 119.82394 * 179.97438 * 6 5 4 8 8 C 1.53665 * 111.24826 * 0.02562 * 7 6 5 9 9 S 1.76755 * 125.01900 * 179.97438 * 5 4 2 10 10 C 1.50702 * 109.46891 * 239.99891 * 2 1 3 11 11 O 1.21283 * 119.99955 * 264.99676 * 10 2 1 12 12 N 1.34772 * 119.99875 * 85.00078 * 10 2 1 13 13 C 1.46505 * 119.99974 * 359.97438 * 12 10 2 14 14 C 1.46500 * 119.99970 * 179.97438 * 12 10 2 15 15 C 1.50699 * 109.46845 * 90.00385 * 14 12 10 16 16 H 1.08002 * 120.00377 * 359.97438 * 15 14 12 17 17 C 1.37881 * 120.00098 * 180.02562 * 15 14 12 18 18 N 1.31515 * 120.00014 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00097 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47508 * 59.99682 * 19 17 15 21 21 H 1.48500 * 109.46938 * 179.97438 * 19 17 15 22 22 H 1.48507 * 109.47125 * 299.99498 * 19 17 15 23 23 H 1.08995 * 109.46876 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46727 * 299.99997 * 1 2 3 25 25 H 1.08996 * 109.47052 * 59.99932 * 1 2 3 26 26 H 1.08998 * 109.12906 * 120.47145 * 7 6 5 27 27 H 1.09001 * 109.13387 * 239.52664 * 7 6 5 28 28 H 1.09003 * 110.65189 * 241.55232 * 8 7 6 29 29 H 1.09000 * 110.65899 * 118.44509 * 8 7 6 30 30 H 1.09000 * 109.47176 * 90.00489 * 13 12 10 31 31 H 1.08999 * 109.46743 * 210.00165 * 13 12 10 32 32 H 1.08995 * 109.47096 * 330.00114 * 13 12 10 33 33 H 1.09001 * 109.47066 * 209.99690 * 14 12 10 34 34 H 1.08996 * 109.47436 * 330.00477 * 14 12 10 35 35 H 0.97000 * 120.00335 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 16 2.1334 -0.8532 1.4779 5 6 1.5441 0.2423 2.7257 6 7 0.8785 1.3200 2.5067 7 6 0.4484 2.1381 3.6187 8 6 0.8938 1.5340 4.9596 9 16 1.7796 0.0210 4.4635 10 6 2.0323 -0.7105 -1.2305 11 8 2.3208 -1.8872 -1.1760 12 7 2.1610 -0.0381 -2.3914 13 6 1.8121 1.3832 -2.4573 14 6 2.6498 -0.7286 -3.5875 15 6 1.4831 -1.3089 -4.3445 16 1 0.4781 -1.1770 -3.9718 17 6 1.6988 -2.0092 -5.5125 18 7 2.9226 -2.1703 -5.9661 19 14 0.2526 -2.7291 -6.4504 20 1 -0.6700 -1.6370 -6.8521 21 1 0.7481 -3.4289 -7.6629 22 1 -0.4699 -3.6933 -5.5823 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 0.8777 3.1346 3.5161 27 1 -0.6388 2.2163 3.6053 28 1 0.0295 1.2878 5.5764 29 1 1.5614 2.2162 5.4859 30 1 2.6906 1.9843 -2.2228 31 1 1.4635 1.6255 -3.4612 32 1 1.0226 1.5973 -1.7370 33 1 3.1802 -0.0207 -4.2244 34 1 3.3268 -1.5305 -3.2930 35 1 3.0744 -2.6627 -6.7880 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103412701.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:19 Heat of formation + Delta-G solvation = -28.430324 kcal Electronic energy + Delta-G solvation = -18398.600695 eV Core-core repulsion = 15455.772677 eV Total energy + Delta-G solvation = -2942.828018 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 288.071 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.85988 -38.73340 -36.71808 -35.03155 -33.99798 -31.81091 -29.75281 -27.53440 -26.30408 -26.02518 -24.28037 -22.43568 -20.68726 -19.28842 -18.69174 -18.19344 -17.40245 -16.86047 -16.74081 -16.32865 -16.23096 -15.64527 -15.02556 -14.80854 -14.58713 -14.25016 -13.85654 -13.69635 -13.55458 -13.41054 -13.19216 -13.09833 -12.96694 -12.75771 -12.55556 -12.43669 -12.20077 -12.01777 -11.74619 -11.49558 -10.79137 -10.64295 -10.51530 -9.53015 -9.12825 -8.93571 -8.23034 -6.37776 -0.29575 0.38961 0.61057 0.84903 1.02858 1.37403 1.41832 1.48719 1.64434 2.23205 2.40979 3.07099 3.36048 3.42743 3.75213 3.81051 3.88830 3.95633 4.31597 4.50160 4.59736 4.62378 4.64454 4.68162 4.72777 4.90080 4.96124 5.12859 5.20001 5.51126 5.77350 6.03377 6.13883 6.56652 6.71013 7.17960 7.35339 8.84281 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.036960 B = 0.003608 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.388128 B = 7758.604732 C = 7883.925372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.090 4.090 3 H 0.138 0.862 4 S 0.026 5.974 5 C 0.158 3.842 6 N -0.529 5.529 7 C 0.035 3.965 8 C -0.102 4.102 9 S -0.194 6.194 10 C 0.516 3.484 11 O -0.579 6.579 12 N -0.597 5.597 13 C 0.071 3.929 14 C 0.260 3.740 15 C -0.545 4.545 16 H 0.056 0.944 17 C 0.009 3.991 18 N -0.928 5.928 19 Si 0.967 3.033 20 H -0.259 1.259 21 H -0.279 1.279 22 H -0.278 1.278 23 H 0.053 0.947 24 H 0.099 0.901 25 H 0.081 0.919 26 H 0.123 0.877 27 H 0.123 0.877 28 H 0.131 0.869 29 H 0.131 0.869 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.030 0.970 34 H 0.000 1.000 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.604 13.526 20.559 25.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.224 4.224 3 H 0.156 0.844 4 S 0.257 5.743 5 C -0.249 4.249 6 N -0.250 5.250 7 C -0.100 4.100 8 C -0.253 4.253 9 S 0.032 5.968 10 C 0.302 3.698 11 O -0.460 6.460 12 N -0.328 5.328 13 C -0.071 4.071 14 C 0.139 3.861 15 C -0.583 4.583 16 H 0.074 0.926 17 C -0.191 4.191 18 N -0.567 5.567 19 Si 0.791 3.209 20 H -0.183 1.183 21 H -0.204 1.204 22 H -0.203 1.203 23 H 0.072 0.928 24 H 0.118 0.882 25 H 0.100 0.900 26 H 0.141 0.859 27 H 0.141 0.859 28 H 0.149 0.851 29 H 0.149 0.851 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.110 0.890 33 H 0.048 0.952 34 H 0.018 0.982 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.532 11.569 20.506 24.185 hybrid contribution -1.267 1.020 -0.920 1.869 sum -6.800 12.588 19.586 24.255 Atomic orbital electron populations 1.21952 0.88844 1.03267 1.05113 1.23509 1.02816 1.03776 0.92285 0.84397 1.86869 1.67046 1.26783 0.93606 1.28971 0.98556 0.98217 0.99142 1.70585 1.14707 1.05661 1.34059 1.23078 1.04254 0.99203 0.83438 1.25088 1.04060 0.94409 1.01712 1.86904 1.71897 1.36394 1.01618 1.20195 0.78273 0.86661 0.84703 1.90689 1.52160 1.17676 1.85464 1.48052 1.63297 1.11995 1.09455 1.22073 1.01647 0.79046 1.04312 1.18842 0.94234 0.91780 0.81288 1.21662 0.93689 1.35228 1.07751 0.92604 1.25854 0.98812 0.96098 0.98294 1.70041 1.21775 1.42050 1.22873 0.85472 0.78991 0.78805 0.77583 1.18339 1.20396 1.20344 0.92768 0.88214 0.90008 0.85932 0.85943 0.85112 0.85071 0.90871 0.90613 0.89005 0.95244 0.98156 0.92342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.60 8.77 71.98 0.63 -2.97 16 2 C -0.09 -2.80 1.80 29.85 0.05 -2.75 16 3 H 0.14 3.62 6.91 -2.39 -0.02 3.60 16 4 S 0.03 0.82 21.06 -56.49 -1.19 -0.37 16 5 C 0.16 3.88 7.45 130.72 0.97 4.85 16 6 N -0.53 -10.90 8.18 -348.16 -2.85 -13.75 16 7 C 0.03 0.41 7.54 86.96 0.66 1.07 16 8 C -0.10 -1.05 7.48 72.21 0.54 -0.51 16 9 S -0.19 -4.01 23.28 -56.49 -1.31 -5.33 16 10 C 0.52 21.97 6.79 87.66 0.60 22.56 16 11 O -0.58 -30.56 15.72 -3.04 -0.05 -30.61 16 12 N -0.60 -25.44 2.86 -851.13 -2.43 -27.87 16 13 C 0.07 2.11 9.87 127.77 1.26 3.37 16 14 C 0.26 14.01 5.16 85.63 0.44 14.45 16 15 C -0.54 -31.28 9.39 25.60 0.24 -31.04 16 16 H 0.06 3.15 7.81 -2.91 -0.02 3.12 16 17 C 0.01 0.50 5.46 84.66 0.46 0.96 16 18 N -0.93 -56.14 13.29 21.45 0.28 -55.85 16 19 Si 0.97 44.78 29.54 68.60 2.03 46.80 16 20 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 21 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 22 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 23 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.10 2.33 5.88 -2.39 -0.01 2.32 16 25 H 0.08 2.06 6.84 -2.39 -0.02 2.04 16 26 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.07 1.81 8.14 -2.39 -0.02 1.80 16 31 H 0.08 2.31 8.07 -2.39 -0.02 2.29 16 32 H 0.09 2.15 5.17 -2.39 -0.01 2.14 16 33 H 0.03 1.60 8.07 -2.39 -0.02 1.58 16 34 H 0.00 0.02 7.42 -2.39 -0.02 0.00 16 35 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -74.20 318.28 1.43 -72.77 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: 1.10 Total: 4.20 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: 5.85 Total: 10.00 kcal Atomic # 7 Polarization: -92.48 SS G_CDS: -5.00 Total: -97.47 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -0.05 Total: -30.61 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Atomic # 16 Polarization: -3.19 SS G_CDS: -2.50 Total: -5.70 kcal Total: -74.20 1.43 -72.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103412701.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.344 kcal (2) G-P(sol) polarization free energy of solvation -74.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds