Wall clock time and date at job start Tue Mar 31 2020 05:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33713 * 122.07897 * 2 1 4 4 S 1.76259 * 108.21802 * 180.02562 * 3 2 1 5 5 C 1.76168 * 89.83806 * 0.02562 * 4 3 2 6 6 C 1.47889 * 125.47715 * 179.97438 * 5 4 3 7 7 C 1.39674 * 120.07449 * 180.02562 * 6 5 4 8 8 C 1.38082 * 120.16333 * 180.02562 * 7 6 5 9 9 C 1.38063 * 120.30287 * 359.97438 * 8 7 6 10 10 C 1.39715 * 120.13764 * 0.02562 * 9 8 7 11 11 C 1.47746 * 120.08512 * 179.97438 * 10 9 8 12 12 O 1.21587 * 120.00101 * 179.97438 * 11 10 9 13 13 N 1.34776 * 120.00007 * 0.02562 * 11 10 9 14 14 C 1.36868 * 120.00276 * 180.02562 * 13 11 10 15 15 H 1.07998 * 119.99631 * 359.97438 * 14 13 11 16 16 C 1.39052 * 120.00328 * 179.97438 * 14 13 11 17 17 N 1.31360 * 119.99798 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99797 * 359.97438 * 16 14 13 19 19 H 1.48508 * 109.46788 * 90.00235 * 18 16 14 20 20 H 1.48498 * 109.47098 * 210.00055 * 18 16 14 21 21 H 1.48497 * 109.47207 * 330.00653 * 18 16 14 22 22 C 1.39257 * 120.06256 * 359.75536 * 6 5 4 23 23 N 1.30222 * 109.05443 * 0.02562 * 5 4 3 24 24 H 1.08994 * 109.47718 * 89.99538 * 1 2 3 25 25 H 1.09000 * 109.47388 * 209.99954 * 1 2 3 26 26 H 1.09001 * 109.46878 * 329.99430 * 1 2 3 27 27 H 1.08006 * 125.89247 * 0.04493 * 3 2 1 28 28 H 1.08005 * 119.91519 * 0.02620 * 7 6 5 29 29 H 1.07994 * 119.84772 * 180.02562 * 8 7 6 30 30 H 1.08008 * 119.93425 * 180.02562 * 9 8 7 31 31 H 0.97001 * 119.99725 * 359.97438 * 13 11 10 32 32 H 0.97000 * 119.99633 * 179.97438 * 17 16 14 33 33 H 1.08005 * 120.15021 * 359.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2171 1.1330 0.0000 4 16 3.9284 0.7107 -0.0007 5 6 3.5015 -0.9985 -0.0018 6 6 4.4619 -2.1230 -0.0033 7 6 3.9974 -3.4403 -0.0046 8 6 4.8925 -4.4916 -0.0055 9 6 6.2518 -4.2493 -0.0057 10 6 6.7303 -2.9367 -0.0045 11 6 8.1850 -2.6787 -0.0042 12 8 8.5998 -1.5358 -0.0036 13 7 9.0524 -3.7103 -0.0056 14 6 10.4000 -3.4714 -0.0048 15 1 10.7684 -2.4562 -0.0034 16 6 11.2949 -4.5357 -0.0057 17 7 12.5883 -4.3063 -0.0044 18 14 10.6577 -6.2916 -0.0073 19 1 10.4890 -6.7556 -1.4080 20 1 11.6285 -7.1712 0.6919 21 1 9.3489 -6.3440 0.6924 22 6 5.8315 -1.8707 -0.0093 23 7 2.2043 -1.1127 -0.0021 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.8120 2.1342 0.0007 28 1 2.9354 -3.6369 -0.0048 29 1 4.5278 -5.5081 -0.0069 30 1 6.9466 -5.0762 -0.0069 31 1 8.7215 -4.6221 -0.0065 32 1 13.2125 -5.0488 -0.0047 33 1 6.1958 -0.8540 -0.0131 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120420862.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:50 Heat of formation + Delta-G solvation = 33.958724 kcal Electronic energy + Delta-G solvation = -18896.309878 eV Core-core repulsion = 15820.743301 eV Total energy + Delta-G solvation = -3075.566577 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.01661 -39.28476 -37.56988 -34.21744 -33.06352 -31.87616 -30.88380 -30.35431 -27.78508 -25.49892 -24.97284 -22.82333 -21.76563 -19.96518 -19.19419 -18.67182 -17.83521 -16.71084 -15.86536 -15.53441 -15.04698 -15.02912 -14.51448 -14.24366 -13.88715 -13.57793 -13.42008 -13.13033 -13.01566 -12.85429 -12.70010 -12.30280 -12.17080 -11.56768 -11.44947 -11.32379 -11.10717 -10.70793 -10.11425 -9.87088 -9.80775 -9.73711 -9.28368 -8.76605 -8.72742 -8.35001 -8.16131 -6.50588 -3.94440 0.17914 1.21274 1.21560 1.53614 1.63831 2.70431 2.93090 2.97936 3.05828 3.52558 3.77041 3.95299 4.29669 4.46572 4.71263 4.95322 4.98034 5.05551 5.12524 5.17049 5.34064 5.35278 5.45708 5.46962 5.51084 5.73874 5.91463 6.05617 6.06867 6.44332 6.49562 6.55104 6.91721 7.39356 7.60040 7.98836 8.42141 8.77347 9.23667 9.68261 10.61014 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.034695 B = 0.003584 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.829483 B = 7810.487770 C = 8602.171623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.067 3.933 3 C -0.265 4.265 4 S 0.103 5.897 5 C 0.131 3.869 6 C -0.042 4.042 7 C -0.070 4.070 8 C -0.124 4.124 9 C -0.090 4.090 10 C -0.093 4.093 11 C 0.473 3.527 12 O -0.577 6.577 13 N -0.567 5.567 14 C -0.300 4.300 15 H 0.125 0.875 16 C 0.044 3.956 17 N -0.864 5.864 18 Si 0.878 3.122 19 H -0.266 1.266 20 H -0.272 1.272 21 H -0.267 1.267 22 C -0.050 4.050 23 N -0.470 5.470 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.176 0.824 28 H 0.134 0.866 29 H 0.131 0.869 30 H 0.126 0.874 31 H 0.372 0.628 32 H 0.278 0.722 33 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.759 2.537 -0.027 21.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.067 4.067 3 C -0.404 4.404 4 S 0.361 5.639 5 C -0.143 4.143 6 C -0.046 4.046 7 C -0.092 4.092 8 C -0.142 4.142 9 C -0.111 4.111 10 C -0.097 4.097 11 C 0.262 3.738 12 O -0.462 6.462 13 N -0.203 5.203 14 C -0.428 4.428 15 H 0.143 0.857 16 C -0.162 4.162 17 N -0.502 5.502 18 Si 0.703 3.297 19 H -0.191 1.191 20 H -0.197 1.197 21 H -0.192 1.192 22 C -0.072 4.072 23 N -0.184 5.184 24 H 0.093 0.907 25 H 0.094 0.906 26 H 0.092 0.908 27 H 0.194 0.806 28 H 0.152 0.848 29 H 0.149 0.851 30 H 0.144 0.856 31 H 0.206 0.794 32 H 0.089 0.911 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -20.495 3.370 -0.027 20.770 hybrid contribution -1.116 -1.327 0.010 1.734 sum -21.611 2.044 -0.017 21.707 Atomic orbital electron populations 1.20378 0.87293 1.03256 1.02877 1.20155 0.98286 0.86466 1.01746 1.26790 0.95530 1.03712 1.14386 1.85289 1.06263 1.03717 1.68669 1.25825 0.92024 0.94887 1.01587 1.17691 0.90398 0.90448 1.06078 1.21238 1.00327 0.90594 0.97050 1.20997 0.92676 0.99121 1.01378 1.21543 0.95941 0.96156 0.97415 1.20184 0.94962 0.92976 1.01565 1.17491 0.84486 0.85720 0.86124 1.90645 1.78610 1.20992 1.55993 1.42193 1.07151 1.06886 1.64085 1.19557 0.78571 0.97571 1.47147 0.85749 1.25132 0.95138 0.98738 0.97148 1.69595 1.00986 1.32905 1.46723 0.86688 0.79307 0.84371 0.79320 1.19114 1.19680 1.19200 1.21206 0.90282 0.99990 0.95760 1.66380 1.04135 1.30776 1.17120 0.90724 0.90605 0.90841 0.80630 0.84841 0.85136 0.85634 0.79358 0.91140 0.84555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 10.28 36.00 0.37 -0.25 16 2 C 0.07 0.77 6.69 -84.40 -0.56 0.20 16 3 C -0.27 -2.82 11.08 29.15 0.32 -2.49 16 4 S 0.10 1.30 22.39 -107.50 -2.41 -1.10 16 5 C 0.13 1.89 7.35 -14.28 -0.10 1.79 16 6 C -0.04 -0.64 5.87 -105.03 -0.62 -1.26 16 7 C -0.07 -0.93 9.67 -39.10 -0.38 -1.31 16 8 C -0.12 -1.57 10.02 -39.70 -0.40 -1.97 16 9 C -0.09 -1.38 9.54 -39.09 -0.37 -1.76 16 10 C -0.09 -1.74 5.87 -105.02 -0.62 -2.36 16 11 C 0.47 11.15 7.72 -12.37 -0.10 11.06 16 12 O -0.58 -15.76 15.91 5.29 0.08 -15.68 16 13 N -0.57 -13.50 5.03 -11.87 -0.06 -13.56 16 14 C -0.30 -8.29 10.16 -15.00 -0.15 -8.44 16 15 H 0.12 3.91 7.38 -52.49 -0.39 3.53 16 16 C 0.04 1.16 5.50 -17.45 -0.10 1.06 16 17 N -0.86 -24.29 13.95 55.50 0.77 -23.52 16 18 Si 0.88 18.53 27.74 -169.99 -4.71 13.82 16 19 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 20 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 21 H -0.27 -5.09 6.52 56.52 0.37 -4.72 16 22 C -0.05 -0.87 9.15 -38.76 -0.35 -1.23 16 23 N -0.47 -6.49 10.10 -7.55 -0.08 -6.57 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.43 8.11 -51.93 -0.42 0.01 16 27 H 0.18 1.32 8.06 -52.48 -0.42 0.90 16 28 H 0.13 1.59 7.81 -52.48 -0.41 1.18 16 29 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 30 H 0.13 1.78 6.39 -52.48 -0.34 1.44 16 31 H 0.37 7.72 3.78 -40.82 -0.15 7.56 16 32 H 0.28 7.16 8.31 -40.82 -0.34 6.82 16 33 H 0.14 2.43 6.88 -52.48 -0.36 2.07 16 LS Contribution 305.82 15.07 4.61 4.61 Total: -1.00 -31.71 305.82 -7.78 -39.48 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -2.93 Total: 9.47 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: -3.06 Total: -6.95 kcal Atomic # 7 Polarization: -44.28 SS G_CDS: 0.64 Total: -43.64 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: 0.08 Total: -15.68 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -4.71 Total: 13.82 kcal Atomic # 16 Polarization: 1.30 SS G_CDS: -2.41 Total: -1.10 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.71 -7.78 -39.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120420862.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.440 kcal (2) G-P(sol) polarization free energy of solvation -31.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds