Wall clock time and date at job start Tue Mar 31 2020 05:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33713 * 122.07897 * 2 1 4 4 S 1.76259 * 108.21802 * 180.02562 * 3 2 1 5 5 C 1.76168 * 89.83806 * 0.02562 * 4 3 2 6 6 C 1.47889 * 125.47715 * 179.97438 * 5 4 3 7 7 C 1.39674 * 120.07449 * 180.02562 * 6 5 4 8 8 C 1.38082 * 120.16333 * 180.02562 * 7 6 5 9 9 C 1.38063 * 120.30287 * 359.97438 * 8 7 6 10 10 C 1.39715 * 120.13764 * 0.02562 * 9 8 7 11 11 C 1.47746 * 120.08512 * 179.97438 * 10 9 8 12 12 O 1.21587 * 120.00101 * 179.97438 * 11 10 9 13 13 N 1.34776 * 120.00007 * 0.02562 * 11 10 9 14 14 C 1.36868 * 120.00276 * 180.02562 * 13 11 10 15 15 H 1.07998 * 119.99631 * 359.97438 * 14 13 11 16 16 C 1.39052 * 120.00328 * 179.97438 * 14 13 11 17 17 N 1.31360 * 119.99798 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99797 * 359.97438 * 16 14 13 19 19 H 1.48508 * 109.46788 * 90.00235 * 18 16 14 20 20 H 1.48498 * 109.47098 * 210.00055 * 18 16 14 21 21 H 1.48497 * 109.47207 * 330.00653 * 18 16 14 22 22 C 1.39257 * 120.06256 * 359.75536 * 6 5 4 23 23 N 1.30222 * 109.05443 * 0.02562 * 5 4 3 24 24 H 1.08994 * 109.47718 * 89.99538 * 1 2 3 25 25 H 1.09000 * 109.47388 * 209.99954 * 1 2 3 26 26 H 1.09001 * 109.46878 * 329.99430 * 1 2 3 27 27 H 1.08006 * 125.89247 * 0.04493 * 3 2 1 28 28 H 1.08005 * 119.91519 * 0.02620 * 7 6 5 29 29 H 1.07994 * 119.84772 * 180.02562 * 8 7 6 30 30 H 1.08008 * 119.93425 * 180.02562 * 9 8 7 31 31 H 0.97001 * 119.99725 * 359.97438 * 13 11 10 32 32 H 0.97000 * 119.99633 * 179.97438 * 17 16 14 33 33 H 1.08005 * 120.15021 * 359.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2171 1.1330 0.0000 4 16 3.9284 0.7107 -0.0007 5 6 3.5015 -0.9985 -0.0018 6 6 4.4619 -2.1230 -0.0033 7 6 3.9974 -3.4403 -0.0046 8 6 4.8925 -4.4916 -0.0055 9 6 6.2518 -4.2493 -0.0057 10 6 6.7303 -2.9367 -0.0045 11 6 8.1850 -2.6787 -0.0042 12 8 8.5998 -1.5358 -0.0036 13 7 9.0524 -3.7103 -0.0056 14 6 10.4000 -3.4714 -0.0048 15 1 10.7684 -2.4562 -0.0034 16 6 11.2949 -4.5357 -0.0057 17 7 12.5883 -4.3063 -0.0044 18 14 10.6577 -6.2916 -0.0073 19 1 10.4890 -6.7556 -1.4080 20 1 11.6285 -7.1712 0.6919 21 1 9.3489 -6.3440 0.6924 22 6 5.8315 -1.8707 -0.0093 23 7 2.2043 -1.1127 -0.0021 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.8120 2.1342 0.0007 28 1 2.9354 -3.6369 -0.0048 29 1 4.5278 -5.5081 -0.0069 30 1 6.9466 -5.0762 -0.0069 31 1 8.7215 -4.6221 -0.0065 32 1 13.2125 -5.0488 -0.0047 33 1 6.1958 -0.8540 -0.0131 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120420862.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:49 Heat of formation + Delta-G solvation = 12.559583 kcal Electronic energy + Delta-G solvation = -18897.237815 eV Core-core repulsion = 15820.743301 eV Total energy + Delta-G solvation = -3076.494514 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.20658 -40.61281 -39.11812 -36.21651 -34.28523 -33.66476 -32.16812 -31.41565 -28.56641 -27.36550 -26.03868 -24.30740 -22.91509 -21.48341 -20.88922 -19.89835 -19.06847 -18.04505 -17.39802 -16.81154 -16.56696 -15.98970 -15.84549 -15.67666 -15.47939 -15.03234 -14.73820 -14.45044 -14.16609 -14.06410 -13.96429 -13.33552 -13.21684 -12.99523 -12.76424 -12.54133 -12.40722 -12.14343 -11.99133 -11.62459 -10.86156 -10.82839 -10.68516 -10.37933 -10.31224 -10.02809 -9.20361 -8.50914 -6.09432 -0.85595 -0.09110 0.23841 0.45995 0.71960 1.27151 1.34741 1.42347 1.70416 2.04174 2.17636 2.59639 2.78559 2.93981 3.19107 3.74520 3.84357 3.88167 4.09399 4.19597 4.24675 4.29782 4.40188 4.65450 4.79961 4.82606 4.88506 4.92562 5.23569 5.30610 5.31656 5.38674 5.46995 5.77477 5.85730 6.46638 6.62681 6.74119 7.23912 7.79278 8.65621 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.034695 B = 0.003584 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.829483 B = 7810.487770 C = 8602.171623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.047 3.953 3 C -0.243 4.243 4 S 0.074 5.926 5 C 0.104 3.896 6 C -0.043 4.043 7 C -0.054 4.054 8 C -0.103 4.103 9 C -0.084 4.084 10 C -0.121 4.121 11 C 0.477 3.523 12 O -0.627 6.627 13 N -0.565 5.565 14 C -0.334 4.334 15 H 0.060 0.940 16 C -0.008 4.008 17 N -0.919 5.919 18 Si 0.957 3.043 19 H -0.250 1.250 20 H -0.268 1.268 21 H -0.228 1.228 22 C -0.062 4.062 23 N -0.472 5.472 24 H 0.085 0.915 25 H 0.075 0.925 26 H 0.096 0.904 27 H 0.210 0.790 28 H 0.157 0.843 29 H 0.180 0.820 30 H 0.143 0.857 31 H 0.391 0.609 32 H 0.284 0.716 33 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.418 -0.125 0.012 26.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.085 4.085 3 C -0.382 4.382 4 S 0.331 5.669 5 C -0.170 4.170 6 C -0.047 4.047 7 C -0.076 4.076 8 C -0.121 4.121 9 C -0.104 4.104 10 C -0.124 4.124 11 C 0.267 3.733 12 O -0.515 6.515 13 N -0.204 5.204 14 C -0.463 4.463 15 H 0.078 0.922 16 C -0.209 4.209 17 N -0.558 5.558 18 Si 0.776 3.224 19 H -0.174 1.174 20 H -0.192 1.192 21 H -0.151 1.151 22 C -0.084 4.084 23 N -0.187 5.187 24 H 0.104 0.896 25 H 0.094 0.906 26 H 0.115 0.885 27 H 0.227 0.773 28 H 0.175 0.825 29 H 0.197 0.803 30 H 0.161 0.839 31 H 0.228 0.772 32 H 0.094 0.906 33 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -25.192 0.703 0.014 25.202 hybrid contribution 0.090 -0.261 -0.007 0.276 sum -25.102 0.443 0.006 25.106 Atomic orbital electron populations 1.20494 0.84488 1.04467 1.03971 1.20778 1.00015 0.86001 1.01709 1.27208 0.93578 1.05180 1.12222 1.85473 1.08786 1.03811 1.68849 1.25751 0.92388 0.95029 1.03808 1.17771 0.89386 0.91940 1.05586 1.21638 1.01740 0.89753 0.94466 1.21451 0.90931 1.01167 0.98555 1.21755 0.97758 0.94607 0.96278 1.19792 0.91523 0.95377 1.05750 1.18416 0.86734 0.84846 0.83341 1.90603 1.80271 1.23260 1.57364 1.41892 1.05567 1.07880 1.65084 1.19081 0.80948 0.95548 1.50745 0.92183 1.26191 0.94866 1.04485 0.95343 1.69759 1.02890 1.35110 1.48031 0.85485 0.80373 0.76016 0.80563 1.17423 1.19211 1.15115 1.21090 0.91487 0.98931 0.96884 1.66398 1.03748 1.32043 1.16510 0.89594 0.90604 0.88489 0.77332 0.82505 0.80299 0.83899 0.77186 0.90591 0.86558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.90 10.28 71.23 0.73 -0.17 16 2 C 0.05 0.96 6.69 41.61 0.28 1.23 16 3 C -0.24 -4.57 11.08 66.79 0.74 -3.83 16 4 S 0.07 1.87 22.39 -56.49 -1.26 0.60 16 5 C 0.10 2.89 7.35 87.49 0.64 3.54 16 6 C -0.04 -1.25 5.87 -20.13 -0.12 -1.37 16 7 C -0.05 -1.24 9.67 22.58 0.22 -1.02 16 8 C -0.10 -2.11 10.02 22.19 0.22 -1.89 16 9 C -0.08 -2.31 9.54 22.59 0.22 -2.10 16 10 C -0.12 -4.53 5.87 -20.12 -0.12 -4.65 16 11 C 0.48 23.56 7.72 86.76 0.67 24.23 16 12 O -0.63 -37.09 15.91 -3.99 -0.06 -37.16 16 13 N -0.57 -27.69 5.03 -309.72 -1.56 -29.25 16 14 C -0.33 -19.72 10.16 84.10 0.85 -18.87 16 15 H 0.06 4.20 7.38 -2.91 -0.02 4.18 16 16 C -0.01 -0.44 5.50 84.96 0.47 0.02 16 17 N -0.92 -54.32 13.95 21.68 0.30 -54.01 16 18 Si 0.96 37.30 27.74 68.60 1.90 39.21 16 19 H -0.25 -9.14 7.11 99.48 0.71 -8.43 16 20 H -0.27 -10.22 7.11 99.48 0.71 -9.52 16 21 H -0.23 -7.38 6.52 99.48 0.65 -6.73 16 22 C -0.06 -2.19 9.15 22.80 0.21 -1.98 16 23 N -0.47 -11.94 10.10 -177.79 -1.80 -13.74 16 24 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.10 0.72 8.11 -2.39 -0.02 0.70 16 27 H 0.21 2.37 8.06 -2.91 -0.02 2.35 16 28 H 0.16 2.94 7.81 -2.91 -0.02 2.92 16 29 H 0.18 2.06 8.06 -2.91 -0.02 2.03 16 30 H 0.14 3.42 6.39 -2.91 -0.02 3.40 16 31 H 0.39 15.67 3.78 -92.71 -0.35 15.32 16 32 H 0.28 15.19 8.31 -92.71 -0.77 14.42 16 33 H 0.12 4.48 6.88 -2.91 -0.02 4.46 16 Total: -1.00 -77.62 305.82 3.29 -74.33 By element: Atomic # 1 Polarization: 26.12 SS G_CDS: 0.75 Total: 26.87 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: 5.01 Total: -6.85 kcal Atomic # 7 Polarization: -93.95 SS G_CDS: -3.05 Total: -97.00 kcal Atomic # 8 Polarization: -37.09 SS G_CDS: -0.06 Total: -37.16 kcal Atomic # 14 Polarization: 37.30 SS G_CDS: 1.90 Total: 39.21 kcal Atomic # 16 Polarization: 1.87 SS G_CDS: -1.26 Total: 0.60 kcal Total: -77.62 3.29 -74.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120420862.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.889 kcal (2) G-P(sol) polarization free energy of solvation -77.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds