Wall clock time and date at job start Tue Mar 31 2020 05:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39724 * 120.43593 * 17.08769 * 3 2 1 5 5 C 1.39651 * 118.31874 * 179.97438 * 4 3 2 6 6 C 1.43204 * 120.44708 * 179.97438 * 5 4 3 7 7 N 5.93198 * 145.99465 * 17.08131 * 2 1 3 8 8 C 1.40960 * 119.10586 * 359.97438 * 5 4 3 9 9 S 1.76204 * 119.60332 * 179.97438 * 8 5 4 10 10 C 1.80999 * 99.99629 * 179.97438 * 9 8 5 11 11 C 1.52999 * 109.46869 * 179.97438 * 10 9 8 12 12 C 1.52999 * 109.47221 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.47355 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00170 * 0.02562 * 13 12 11 15 15 C 1.37885 * 120.00104 * 179.97438 * 13 12 11 16 16 N 1.31508 * 119.99876 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99839 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46885 * 90.00407 * 17 15 13 19 19 H 1.48497 * 109.46875 * 210.00199 * 17 15 13 20 20 H 1.48492 * 109.47348 * 330.00355 * 17 15 13 21 21 N 1.32439 * 120.78581 * 359.74819 * 8 5 4 22 22 C 1.32330 * 121.84605 * 0.52402 * 21 8 5 23 23 N 1.38025 * 119.59305 * 179.75270 * 22 21 8 24 24 H 1.08007 * 120.84083 * 359.97438 * 4 3 2 25 25 H 1.08996 * 109.47373 * 299.99911 * 10 9 8 26 26 H 1.08996 * 109.47221 * 60.00199 * 10 9 8 27 27 H 1.08996 * 109.47473 * 300.00367 * 11 10 9 28 28 H 1.09006 * 109.46966 * 60.00779 * 11 10 9 29 29 H 1.08996 * 109.47296 * 300.00597 * 12 11 10 30 30 H 1.09002 * 109.47281 * 60.00373 * 12 11 10 31 31 H 0.96999 * 120.00223 * 179.97438 * 16 15 13 32 32 H 0.96996 * 120.00314 * 179.72714 * 23 22 21 33 33 H 0.97009 * 120.00077 * 359.45141 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2764 -1.1506 -0.3540 5 6 4.6719 -1.1005 -0.3393 6 6 5.4432 -2.2539 -0.6935 7 7 6.0535 -3.1712 -0.9745 8 6 5.3111 0.1008 0.0287 9 16 7.0713 0.1784 0.0523 10 6 7.3030 1.8950 0.5775 11 6 8.7990 2.2018 0.6719 12 6 8.9950 3.6530 1.1152 13 6 10.4684 3.9554 1.2076 14 1 11.1927 3.1893 0.9732 15 6 10.8919 5.2105 1.5905 16 7 10.0101 6.1435 1.8755 17 14 12.7184 5.5851 1.7057 18 1 13.2030 6.0927 0.3970 19 1 12.9475 6.6142 2.7514 20 1 13.4564 4.3462 2.0601 21 7 4.6044 1.1730 0.3527 22 6 3.2811 1.1624 0.3555 23 7 2.5911 2.3053 0.7059 24 1 2.7577 -2.0563 -0.6319 25 1 6.8399 2.5628 -0.1488 26 1 6.8401 2.0421 1.5532 27 1 9.2618 1.5339 1.3984 28 1 9.2623 2.0547 -0.3038 29 1 8.5323 4.3206 0.3884 30 1 8.5316 3.8007 2.0907 31 1 10.3079 7.0263 2.1452 32 1 1.6211 2.3053 0.7061 33 1 3.0762 3.1073 0.9558 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122054537.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:53 Heat of formation + Delta-G solvation = 58.599911 kcal Electronic energy + Delta-G solvation = -18263.104752 eV Core-core repulsion = 15220.899448 eV Total energy + Delta-G solvation = -3042.205304 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.074 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.58124 -38.01337 -37.53803 -36.33617 -35.90153 -34.14329 -33.81968 -31.21587 -29.40746 -26.44728 -25.35903 -24.70554 -22.11148 -21.61988 -19.51524 -19.12311 -18.44422 -18.19591 -16.75827 -16.53884 -16.43123 -16.40286 -15.95297 -15.21054 -14.73526 -14.59075 -14.50705 -14.41266 -14.27440 -14.05305 -13.91785 -13.62753 -13.58606 -13.32182 -12.84080 -12.76072 -12.38312 -12.23373 -11.77399 -11.61798 -11.26640 -11.17924 -11.11883 -10.91397 -10.52108 -9.54461 -8.71406 -8.17758 -6.27567 -0.66883 -0.15998 0.28448 1.02060 1.43377 1.43571 1.51150 1.54629 1.58270 1.66505 2.19908 2.23360 2.43659 2.70293 2.77984 2.98624 3.16307 3.39453 3.67196 4.03799 4.11804 4.14728 4.47797 4.55795 4.63733 4.87034 4.94114 5.07521 5.19586 5.54117 5.74471 5.84628 5.87427 6.09287 6.26581 6.39619 6.49502 6.84505 6.88679 7.41379 8.93670 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.021710 B = 0.003233 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.435851 B = 8659.279645 C = 9922.966745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C 0.288 3.712 3 C -0.164 4.164 4 C 0.107 3.893 5 C -0.136 4.136 6 C 0.284 3.716 7 N -0.446 5.446 8 C 0.242 3.758 9 S -0.044 6.044 10 C -0.082 4.082 11 C -0.090 4.090 12 C 0.034 3.966 13 C -0.543 4.543 14 H 0.059 0.941 15 C 0.003 3.997 16 N -0.930 5.930 17 Si 0.959 3.041 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.265 1.265 21 N -0.558 5.558 22 C 0.494 3.506 23 N -0.811 5.811 24 H 0.191 0.809 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.059 0.941 28 H 0.059 0.941 29 H -0.001 1.001 30 H -0.001 1.001 31 H 0.263 0.737 32 H 0.421 0.579 33 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.654 -11.315 -3.436 20.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.125 5.125 2 C -0.027 4.027 3 C -0.179 4.179 4 C 0.077 3.923 5 C -0.153 4.153 6 C -0.032 4.032 7 N -0.123 5.123 8 C -0.014 4.014 9 S 0.203 5.797 10 C -0.231 4.231 11 C -0.129 4.129 12 C -0.005 4.005 13 C -0.582 4.582 14 H 0.077 0.923 15 C -0.195 4.195 16 N -0.570 5.570 17 Si 0.784 3.216 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.189 1.189 21 N -0.281 5.281 22 C 0.244 3.756 23 N -0.350 5.350 24 H 0.208 0.792 25 H 0.114 0.886 26 H 0.114 0.886 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.018 0.982 30 H 0.018 0.982 31 H 0.072 0.928 32 H 0.254 0.746 33 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -16.110 -12.559 -3.822 20.782 hybrid contribution -0.316 1.586 0.481 1.687 sum -16.426 -10.973 -3.341 20.035 Atomic orbital electron populations 1.81378 1.12414 1.07478 1.11260 1.24971 0.91571 0.93650 0.92464 1.15778 0.84889 0.95937 1.21251 1.21529 0.89736 0.97217 0.83813 1.15823 0.92167 0.88928 1.18352 1.25117 0.93120 0.92312 0.92602 1.81328 1.08190 1.11695 1.11084 1.23211 0.98899 0.89512 0.89776 1.86290 0.94642 1.18079 1.80698 1.23564 1.00793 0.93014 1.05714 1.21292 0.92039 0.98229 1.01332 1.18936 0.95294 0.91147 0.95166 1.21688 0.93698 0.97243 1.45538 0.92313 1.25885 1.02319 0.96310 0.94966 1.70067 1.35567 1.04139 1.47230 0.85532 0.79937 0.78135 0.77979 1.19900 1.20823 1.18949 1.67745 1.05869 1.27769 1.26745 1.18312 0.87225 0.86149 0.83946 1.42384 1.10171 1.11731 1.70730 0.79202 0.88622 0.88628 0.92219 0.92218 0.98237 0.98220 0.92781 0.74638 0.74559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -8.05 18.54 19.01 0.35 -7.70 16 2 C 0.29 3.86 14.08 88.33 1.24 5.10 16 3 C -0.16 -1.93 5.77 -21.03 -0.12 -2.05 16 4 C 0.11 1.11 9.61 22.97 0.22 1.33 16 5 C -0.14 -2.25 5.77 -21.02 -0.12 -2.37 16 6 C 0.28 5.88 14.28 88.32 1.26 7.14 16 7 N -0.45 -11.44 18.54 19.02 0.35 -11.09 16 8 C 0.24 5.01 7.02 85.27 0.60 5.61 16 9 S -0.04 -1.12 21.03 -56.49 -1.19 -2.31 16 10 C -0.08 -2.46 4.83 71.98 0.35 -2.12 16 11 C -0.09 -3.38 5.16 30.59 0.16 -3.23 16 12 C 0.03 1.65 4.97 29.85 0.15 1.80 16 13 C -0.54 -29.78 9.11 25.60 0.23 -29.55 16 14 H 0.06 3.11 7.74 -2.91 -0.02 3.09 16 15 C 0.00 0.18 5.46 84.66 0.46 0.65 16 16 N -0.93 -54.59 13.29 21.45 0.28 -54.31 16 17 Si 0.96 43.17 29.54 68.60 2.03 45.19 16 18 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 19 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 20 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 21 N -0.56 -10.94 9.11 -187.51 -1.71 -12.64 16 22 C 0.49 7.15 7.75 133.84 1.04 8.19 16 23 N -0.81 -8.30 8.96 -54.97 -0.49 -8.79 16 24 H 0.19 0.70 8.06 -2.91 -0.02 0.68 16 25 H 0.10 2.84 8.12 -2.40 -0.02 2.82 16 26 H 0.10 2.83 8.12 -2.40 -0.02 2.81 16 27 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 29 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 30 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 31 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 32 H 0.42 3.07 7.63 -92.71 -0.71 2.37 16 33 H 0.42 4.01 8.95 -92.70 -0.83 3.18 16 Total: -1.00 -66.63 323.61 4.75 -61.88 By element: Atomic # 1 Polarization: -0.38 SS G_CDS: -0.35 Total: -0.73 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: 5.47 Total: -9.51 kcal Atomic # 7 Polarization: -93.32 SS G_CDS: -1.21 Total: -94.53 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 16 Polarization: -1.12 SS G_CDS: -1.19 Total: -2.31 kcal Total: -66.63 4.75 -61.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122054537.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.483 kcal (2) G-P(sol) polarization free energy of solvation -66.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds