Wall clock time and date at job start Tue Mar 31 2020 06:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.46895 * 2 1 4 4 C 1.50702 * 109.46950 * 179.97438 * 3 2 1 5 5 N 1.30071 * 126.20865 * 89.97474 * 4 3 2 6 6 N 1.28654 * 109.56671 * 180.02562 * 5 4 3 7 7 C 1.31150 * 109.30817 * 0.02562 * 6 5 4 8 8 S 1.76193 * 126.38150 * 180.02562 * 7 6 5 9 9 C 1.81002 * 100.00049 * 0.02562 * 8 7 6 10 10 C 1.53000 * 109.47004 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.46886 * 180.02562 * 10 9 8 12 12 S 1.81002 * 109.47152 * 179.97438 * 11 10 9 13 13 C 1.76198 * 100.00092 * 179.97438 * 12 11 10 14 14 H 1.07999 * 119.99945 * 359.97438 * 13 12 11 15 15 C 1.38802 * 120.00251 * 180.02562 * 13 12 11 16 16 N 1.31634 * 119.99707 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00286 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47317 * 89.99433 * 17 15 13 19 19 H 1.48497 * 109.46918 * 209.99769 * 17 15 13 20 20 H 1.48501 * 109.46826 * 329.99672 * 17 15 13 21 21 O 1.34638 * 107.23679 * 0.25801 * 7 6 5 22 22 H 1.09004 * 109.46968 * 60.00455 * 1 2 3 23 23 H 1.09000 * 109.47430 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47790 * 299.99950 * 1 2 3 25 25 H 1.09002 * 109.47149 * 239.99393 * 2 1 3 26 26 H 1.09004 * 109.46968 * 119.99545 * 2 1 3 27 27 H 1.09002 * 109.47718 * 59.99741 * 3 2 1 28 28 H 1.09000 * 109.47353 * 299.99801 * 3 2 1 29 29 H 1.09002 * 109.47115 * 60.00094 * 9 8 7 30 30 H 1.09001 * 109.46925 * 300.00251 * 9 8 7 31 31 H 1.09001 * 109.47194 * 299.99731 * 10 9 8 32 32 H 1.08992 * 109.47399 * 59.99903 * 10 9 8 33 33 H 1.09001 * 109.47109 * 299.99380 * 11 10 9 34 34 H 1.09002 * 109.47508 * 59.99571 * 11 10 9 35 35 H 0.96996 * 119.99880 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4425 0.0006 5 7 4.3157 1.4419 -1.0485 6 7 5.5482 1.4415 -0.6796 7 6 5.6087 1.4414 0.6305 8 16 7.0739 1.4416 1.6091 9 6 8.3253 1.4428 0.3014 10 6 9.7201 1.4425 0.9303 11 6 10.7779 1.4442 -0.1751 12 16 12.4280 1.4446 0.5688 13 6 13.4201 1.4458 -0.8873 14 1 12.9512 1.4457 -1.8602 15 6 14.8042 1.4459 -0.7841 16 7 15.3757 1.4456 0.4017 17 14 15.8560 1.4479 -2.3278 18 1 16.1345 2.8484 -2.7353 19 1 17.1368 0.7477 -2.0549 20 1 15.1328 0.7490 -3.4203 21 8 4.3426 1.4358 1.0883 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 1.6766 1.9564 0.8899 28 1 1.6766 1.9563 -0.8900 29 1 8.2048 2.3331 -0.3159 30 1 8.2056 0.5531 -0.3168 31 1 9.8400 2.3321 1.5488 32 1 9.8403 0.5522 1.5473 33 1 10.6582 0.5549 -0.7939 34 1 10.6575 2.3349 -0.7919 35 1 16.3430 1.4460 0.4739 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122207886.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:35 Heat of formation + Delta-G solvation = 9.034503 kcal Electronic energy + Delta-G solvation = -16890.499953 eV Core-core repulsion = 13949.296531 eV Total energy + Delta-G solvation = -2941.203421 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 288.071 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -44.30505 -36.39489 -35.94573 -34.51027 -32.45807 -31.66298 -28.15982 -27.08815 -25.51306 -24.28238 -23.32063 -21.87830 -21.51351 -18.64810 -17.61197 -17.52645 -16.79827 -15.80575 -15.38287 -15.34797 -15.04054 -14.82097 -14.13930 -13.94193 -13.19622 -12.88297 -12.84515 -12.65263 -12.49428 -12.19150 -12.02195 -11.91984 -11.86959 -11.48712 -11.26508 -11.09722 -10.96659 -10.77266 -10.69880 -10.58739 -10.44192 -9.64349 -9.08658 -8.38048 -8.08035 -6.58344 -6.25981 -3.97218 0.36408 0.77959 1.77436 2.08281 2.48699 3.20315 3.21358 3.28346 3.50150 3.85140 4.18755 4.34983 4.38494 4.64607 4.70759 4.84003 4.90724 4.99252 5.01959 5.10641 5.11975 5.19501 5.29561 5.31566 5.47593 5.53828 5.59688 5.64729 5.71872 5.84450 6.11209 6.35510 6.58512 7.58362 7.97007 8.33965 9.20644 10.82176 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.047111 B = 0.002284 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.197024 B =12257.618607 C =12686.599100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.021 4.021 4 C 0.159 3.841 5 N -0.275 5.275 6 N -0.289 5.289 7 C 0.138 3.862 8 S 0.061 5.939 9 C -0.107 4.107 10 C -0.085 4.085 11 C -0.109 4.109 12 S -0.127 6.127 13 C -0.517 4.517 14 H 0.074 0.926 15 C 0.071 3.929 16 N -0.869 5.869 17 Si 0.919 3.081 18 H -0.277 1.277 19 H -0.282 1.282 20 H -0.272 1.272 21 O -0.209 6.209 22 H 0.060 0.940 23 H 0.061 0.939 24 H 0.058 0.942 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.098 0.902 28 H 0.112 0.888 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.993 -0.866 2.348 27.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.060 4.060 4 C -0.056 4.056 5 N -0.122 5.122 6 N -0.141 5.141 7 C -0.179 4.179 8 S 0.291 5.709 9 C -0.257 4.257 10 C -0.126 4.126 11 C -0.260 4.260 12 S 0.101 5.899 13 C -0.666 4.666 14 H 0.092 0.908 15 C -0.138 4.138 16 N -0.505 5.505 17 Si 0.746 3.254 18 H -0.202 1.202 19 H -0.207 1.207 20 H -0.196 1.196 21 O -0.090 6.090 22 H 0.079 0.921 23 H 0.080 0.920 24 H 0.077 0.923 25 H 0.092 0.908 26 H 0.087 0.913 27 H 0.116 0.884 28 H 0.130 0.870 29 H 0.120 0.880 30 H 0.120 0.880 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -25.984 -0.870 3.489 26.232 hybrid contribution -0.185 0.029 -2.396 2.403 sum -26.169 -0.841 1.094 26.205 Atomic orbital electron populations 1.21748 0.94220 1.02523 1.02323 1.21573 0.96839 0.94339 1.03471 1.20279 0.79884 1.00007 1.05818 1.28079 0.97556 1.00642 0.79372 1.74112 0.96059 1.16410 1.25611 1.74957 1.12242 1.19438 1.07438 1.30150 0.89703 1.03162 0.94882 1.86083 0.86568 1.90558 1.07651 1.24004 0.95036 1.07938 0.98745 1.21105 0.88759 1.04235 0.98467 1.23244 0.99249 1.03604 0.99864 1.84636 0.93858 1.96909 1.14460 1.22687 0.92959 1.58696 0.92222 0.90792 1.25020 0.97061 0.94510 0.97173 1.70016 1.10806 1.47122 1.22538 0.86146 0.79172 0.78403 0.81716 1.20241 1.20736 1.19639 1.84981 1.15687 1.70621 1.37715 0.92128 0.91959 0.92267 0.90816 0.91264 0.88390 0.87016 0.88012 0.88026 0.90159 0.90157 0.91546 0.91544 0.92247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.58 9.91 37.16 0.37 -0.21 16 2 C -0.12 -0.70 5.92 -26.74 -0.16 -0.86 16 3 C -0.02 -0.13 5.84 -27.89 -0.16 -0.30 16 4 C 0.16 1.78 7.73 -13.02 -0.10 1.68 16 5 N -0.28 -3.92 12.20 32.59 0.40 -3.52 16 6 N -0.29 -4.43 11.63 30.29 0.35 -4.08 16 7 C 0.14 1.89 8.53 52.47 0.45 2.34 16 8 S 0.06 0.73 22.31 -107.50 -2.40 -1.67 16 9 C -0.11 -1.39 5.23 37.16 0.19 -1.19 16 10 C -0.09 -1.27 5.22 -26.73 -0.14 -1.41 16 11 C -0.11 -2.09 5.67 37.16 0.21 -1.88 16 12 S -0.13 -3.22 21.44 -107.50 -2.30 -5.52 16 13 C -0.52 -14.62 9.50 30.94 0.29 -14.33 16 14 H 0.07 2.03 7.80 -52.49 -0.41 1.62 16 15 C 0.07 2.01 5.49 -17.43 -0.10 1.92 16 16 N -0.87 -25.67 13.22 55.49 0.73 -24.94 16 17 Si 0.92 21.41 29.55 -169.99 -5.02 16.38 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 21 O -0.21 -2.63 10.90 3.51 0.04 -2.59 16 22 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 23 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 24 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.10 1.32 8.14 -51.92 -0.42 0.90 16 30 H 0.10 1.32 8.14 -51.92 -0.42 0.90 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.07 1.26 8.14 -51.92 -0.42 0.84 16 34 H 0.07 1.26 8.14 -51.91 -0.42 0.84 16 35 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 333.58 15.07 5.03 5.03 Total: -1.00 -32.35 333.58 -7.36 -39.71 By element: Atomic # 1 Polarization: 0.47 SS G_CDS: -5.04 Total: -4.57 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: 0.86 Total: -14.24 kcal Atomic # 7 Polarization: -34.02 SS G_CDS: 1.48 Total: -32.53 kcal Atomic # 8 Polarization: -2.63 SS G_CDS: 0.04 Total: -2.59 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -2.49 SS G_CDS: -4.70 Total: -7.19 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.35 -7.36 -39.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122207886.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.749 kcal (2) G-P(sol) polarization free energy of solvation -32.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds