Wall clock time and date at job start Tue Mar 31 2020 06:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.46895 * 2 1 4 4 C 1.50702 * 109.46950 * 179.97438 * 3 2 1 5 5 N 1.30071 * 126.20865 * 89.97474 * 4 3 2 6 6 N 1.28654 * 109.56671 * 180.02562 * 5 4 3 7 7 C 1.31150 * 109.30817 * 0.02562 * 6 5 4 8 8 S 1.76193 * 126.38150 * 180.02562 * 7 6 5 9 9 C 1.81002 * 100.00049 * 0.02562 * 8 7 6 10 10 C 1.53000 * 109.47004 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.46886 * 180.02562 * 10 9 8 12 12 S 1.81002 * 109.47152 * 179.97438 * 11 10 9 13 13 C 1.76198 * 100.00092 * 179.97438 * 12 11 10 14 14 H 1.07999 * 119.99945 * 359.97438 * 13 12 11 15 15 C 1.38802 * 120.00251 * 180.02562 * 13 12 11 16 16 N 1.31634 * 119.99707 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00286 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47317 * 89.99433 * 17 15 13 19 19 H 1.48497 * 109.46918 * 209.99769 * 17 15 13 20 20 H 1.48501 * 109.46826 * 329.99672 * 17 15 13 21 21 O 1.34638 * 107.23679 * 0.25801 * 7 6 5 22 22 H 1.09004 * 109.46968 * 60.00455 * 1 2 3 23 23 H 1.09000 * 109.47430 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47790 * 299.99950 * 1 2 3 25 25 H 1.09002 * 109.47149 * 239.99393 * 2 1 3 26 26 H 1.09004 * 109.46968 * 119.99545 * 2 1 3 27 27 H 1.09002 * 109.47718 * 59.99741 * 3 2 1 28 28 H 1.09000 * 109.47353 * 299.99801 * 3 2 1 29 29 H 1.09002 * 109.47115 * 60.00094 * 9 8 7 30 30 H 1.09001 * 109.46925 * 300.00251 * 9 8 7 31 31 H 1.09001 * 109.47194 * 299.99731 * 10 9 8 32 32 H 1.08992 * 109.47399 * 59.99903 * 10 9 8 33 33 H 1.09001 * 109.47109 * 299.99380 * 11 10 9 34 34 H 1.09002 * 109.47508 * 59.99571 * 11 10 9 35 35 H 0.96996 * 119.99880 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4425 0.0006 5 7 4.3157 1.4419 -1.0485 6 7 5.5482 1.4415 -0.6796 7 6 5.6087 1.4414 0.6305 8 16 7.0739 1.4416 1.6091 9 6 8.3253 1.4428 0.3014 10 6 9.7201 1.4425 0.9303 11 6 10.7779 1.4442 -0.1751 12 16 12.4280 1.4446 0.5688 13 6 13.4201 1.4458 -0.8873 14 1 12.9512 1.4457 -1.8602 15 6 14.8042 1.4459 -0.7841 16 7 15.3757 1.4456 0.4017 17 14 15.8560 1.4479 -2.3278 18 1 16.1345 2.8484 -2.7353 19 1 17.1368 0.7477 -2.0549 20 1 15.1328 0.7490 -3.4203 21 8 4.3426 1.4358 1.0883 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 1.6766 1.9564 0.8899 28 1 1.6766 1.9563 -0.8900 29 1 8.2048 2.3331 -0.3159 30 1 8.2056 0.5531 -0.3168 31 1 9.8400 2.3321 1.5488 32 1 9.8403 0.5522 1.5473 33 1 10.6582 0.5549 -0.7939 34 1 10.6575 2.3349 -0.7919 35 1 16.3430 1.4460 0.4739 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122207886.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:35 Heat of formation + Delta-G solvation = -13.418389 kcal Electronic energy + Delta-G solvation = -16891.473583 eV Core-core repulsion = 13949.296531 eV Total energy + Delta-G solvation = -2942.177052 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 288.071 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -45.28070 -37.39563 -36.46364 -35.80620 -34.59619 -32.48096 -28.98358 -28.33018 -27.55633 -25.28611 -24.11170 -22.87938 -22.36485 -19.70882 -19.50832 -18.59335 -17.70481 -16.89192 -16.69495 -16.62302 -16.23945 -15.91879 -15.55846 -14.92604 -14.40780 -14.13417 -13.68872 -13.67724 -13.49219 -13.29636 -13.16664 -12.97197 -12.93465 -12.81283 -12.48890 -12.36821 -12.32870 -12.04609 -11.73624 -11.67179 -11.45841 -11.38515 -11.14440 -10.34477 -9.04550 -8.66198 -8.37707 -6.13387 -0.63015 -0.17084 0.72806 1.09353 1.32372 1.39573 1.48784 1.61310 1.75171 2.27467 2.96941 3.08819 3.29571 3.66486 3.77568 3.79878 3.87226 3.90866 4.07599 4.09686 4.12379 4.29129 4.56533 4.58853 4.66194 4.69293 4.74752 4.85563 4.96657 5.14929 5.16203 5.20358 5.40827 5.40859 6.18425 6.98294 7.05213 8.71485 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.047111 B = 0.002284 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.197024 B =12257.618607 C =12686.599100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.120 4.120 3 C -0.021 4.021 4 C 0.176 3.824 5 N -0.312 5.312 6 N -0.317 5.317 7 C 0.127 3.873 8 S 0.097 5.903 9 C -0.104 4.104 10 C -0.074 4.074 11 C -0.087 4.087 12 S -0.186 6.186 13 C -0.540 4.540 14 H 0.073 0.927 15 C 0.016 3.984 16 N -0.906 5.906 17 Si 0.992 3.008 18 H -0.268 1.268 19 H -0.274 1.274 20 H -0.264 1.264 21 O -0.213 6.213 22 H 0.067 0.933 23 H 0.063 0.937 24 H 0.069 0.931 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.124 0.876 28 H 0.128 0.872 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.722 -0.723 2.002 28.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.159 4.159 3 C -0.060 4.060 4 C -0.039 4.039 5 N -0.157 5.157 6 N -0.168 5.168 7 C -0.191 4.191 8 S 0.327 5.673 9 C -0.255 4.255 10 C -0.115 4.115 11 C -0.238 4.238 12 S 0.043 5.957 13 C -0.688 4.688 14 H 0.091 0.909 15 C -0.189 4.189 16 N -0.542 5.542 17 Si 0.814 3.186 18 H -0.193 1.193 19 H -0.199 1.199 20 H -0.189 1.189 21 O -0.094 6.094 22 H 0.086 0.914 23 H 0.082 0.918 24 H 0.088 0.912 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.142 0.858 28 H 0.146 0.854 29 H 0.121 0.879 30 H 0.120 0.880 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -27.729 -0.727 3.133 27.915 hybrid contribution 0.182 -0.023 -2.243 2.250 sum -27.547 -0.750 0.890 27.572 Atomic orbital electron populations 1.21727 0.92504 1.02946 1.03225 1.21544 0.98183 0.93580 1.02581 1.20669 0.76550 1.00893 1.07856 1.29068 0.98957 0.97555 0.78364 1.74052 0.96124 1.18636 1.26935 1.74877 1.13190 1.20448 1.08302 1.30346 0.90546 1.03421 0.94788 1.85918 0.85296 1.90383 1.05718 1.23784 0.94389 1.08106 0.99183 1.20932 0.88642 1.04763 0.97122 1.23157 0.96135 1.03713 1.00803 1.84574 0.98371 1.97060 1.15717 1.23052 0.93988 1.58865 0.92860 0.90869 1.26034 0.98420 0.93797 1.00632 1.70140 1.11292 1.47933 1.24846 0.85039 0.77267 0.78796 0.77468 1.19345 1.19915 1.18852 1.84996 1.15441 1.70796 1.38158 0.91433 0.91827 0.91163 0.92176 0.91783 0.85830 0.85413 0.87915 0.87970 0.89672 0.89690 0.91397 0.91357 0.91938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.91 71.98 0.71 -0.07 16 2 C -0.12 -1.15 5.92 30.59 0.18 -0.97 16 3 C -0.02 -0.22 5.84 29.85 0.17 -0.05 16 4 C 0.18 3.72 7.73 88.37 0.68 4.40 16 5 N -0.31 -8.72 12.20 -165.24 -2.02 -10.73 16 6 N -0.32 -9.57 11.63 -172.08 -2.00 -11.57 16 7 C 0.13 3.35 8.53 130.34 1.11 4.46 16 8 S 0.10 2.18 22.31 -56.49 -1.26 0.92 16 9 C -0.10 -2.58 5.23 71.98 0.38 -2.20 16 10 C -0.07 -2.14 5.22 30.59 0.16 -1.98 16 11 C -0.09 -3.32 5.67 71.98 0.41 -2.91 16 12 S -0.19 -9.58 21.44 -56.49 -1.21 -10.79 16 13 C -0.54 -30.81 9.50 67.95 0.65 -30.17 16 14 H 0.07 4.04 7.80 -2.91 -0.02 4.01 16 15 C 0.02 0.92 5.49 84.86 0.47 1.39 16 16 N -0.91 -54.11 13.22 21.65 0.29 -53.83 16 17 Si 0.99 43.80 29.55 68.60 2.03 45.83 16 18 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 19 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 20 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 21 O -0.21 -5.06 10.90 -10.35 -0.11 -5.18 16 22 H 0.07 0.28 8.14 -2.38 -0.02 0.26 16 23 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 24 H 0.07 0.24 8.14 -2.39 -0.02 0.22 16 25 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 27 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 30 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 31 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 34 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 35 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -70.30 333.58 1.71 -68.60 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: 1.07 Total: 4.86 kcal Atomic # 6 Polarization: -33.02 SS G_CDS: 4.92 Total: -28.10 kcal Atomic # 7 Polarization: -72.40 SS G_CDS: -3.73 Total: -76.13 kcal Atomic # 8 Polarization: -5.06 SS G_CDS: -0.11 Total: -5.18 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 16 Polarization: -7.40 SS G_CDS: -2.47 Total: -9.87 kcal Total: -70.30 1.71 -68.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122207886.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.179 kcal (2) G-P(sol) polarization free energy of solvation -70.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds