Wall clock time and date at job start Tue Mar 31 2020 05:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30926 * 1 3 3 Si 1.86797 * 120.00324 * 2 1 4 4 H 1.48504 * 109.47337 * 240.00290 * 3 2 1 5 5 H 1.48500 * 109.46891 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47284 * 119.99954 * 3 2 1 7 7 C 1.39828 * 119.99815 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99844 * 196.39270 * 7 2 1 9 9 C 1.41095 * 120.00299 * 16.38534 * 7 2 1 10 10 C 1.40912 * 120.15470 * 205.47227 * 9 7 2 11 11 C 1.36292 * 119.84255 * 180.02562 * 10 9 7 12 12 C 1.39634 * 120.15379 * 359.97438 * 11 10 9 13 13 N 1.38726 * 119.84310 * 179.97438 * 12 11 10 14 14 C 1.39807 * 119.99742 * 139.31155 * 13 12 11 15 15 C 1.38775 * 120.10118 * 351.95388 * 14 13 12 16 16 C 1.38291 * 119.98262 * 179.76993 * 15 14 13 17 17 Cl 1.73596 * 119.91189 * 180.27403 * 16 15 14 18 18 C 1.38413 * 120.18322 * 0.50754 * 16 15 14 19 19 C 1.38245 * 120.19957 * 359.74348 * 18 16 15 20 20 C 1.38671 * 120.01839 * 359.97438 * 19 18 16 21 21 N 1.39953 * 120.09378 * 180.02562 * 20 19 18 22 22 C 1.39630 * 120.30778 * 0.26422 * 12 11 10 23 23 C 1.36293 * 120.15739 * 359.47536 * 22 12 11 24 24 H 0.97003 * 119.99436 * 359.97438 * 1 2 3 25 25 H 1.07995 * 120.07336 * 359.97438 * 10 9 7 26 26 H 1.07996 * 119.92227 * 179.97438 * 11 10 9 27 27 H 0.97000 * 120.00248 * 319.03637 * 13 12 11 28 28 H 1.07996 * 120.00486 * 0.02562 * 15 14 13 29 29 H 1.07996 * 119.90119 * 179.72946 * 18 16 15 30 30 H 1.08006 * 119.99293 * 179.97438 * 19 18 16 31 31 H 0.97001 * 120.00237 * 179.97438 * 21 20 19 32 32 H 0.97007 * 120.00222 * 359.97438 * 21 20 19 33 33 H 1.08005 * 119.92151 * 179.73752 * 22 12 11 34 34 H 1.08000 * 120.08356 * 180.25637 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3093 0.0000 0.0000 3 14 2.2433 1.6177 0.0000 4 1 3.0971 1.6964 -1.2126 5 1 1.2784 2.7464 0.0006 6 1 3.0971 1.6963 1.2125 7 6 2.0084 -1.2110 -0.0005 8 1 3.0554 -1.2301 0.2634 9 6 1.3459 -2.4079 -0.3458 10 6 1.8188 -3.6438 0.1387 11 6 1.1743 -4.7962 -0.1992 12 6 0.0476 -4.7540 -1.0230 13 7 -0.6032 -5.9310 -1.3633 14 6 -2.0002 -5.9735 -1.3940 15 6 -2.7398 -4.8966 -0.9260 16 6 -4.1216 -4.9393 -0.9620 17 17 -5.0449 -3.5882 -0.3826 18 6 -4.7706 -6.0584 -1.4542 19 6 -4.0414 -7.1376 -1.9176 20 6 -2.6554 -7.1013 -1.8908 21 7 -1.9157 -8.1927 -2.3600 22 6 -0.4236 -3.5334 -1.5106 23 6 0.2081 -2.3728 -1.1764 24 1 -0.4849 0.8401 0.0004 25 1 2.6904 -3.6777 0.7755 26 1 1.5359 -5.7441 0.1710 27 1 -0.0889 -6.7233 -1.5838 28 1 -2.2363 -4.0237 -0.5376 29 1 -5.8499 -6.0886 -1.4762 30 1 -4.5513 -8.0093 -2.3006 31 1 -0.9462 -8.1657 -2.3410 32 1 -2.3724 -8.9763 -2.7043 33 1 -1.2931 -3.5085 -2.1507 34 1 -0.1598 -1.4290 -1.5509 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124569506.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:53 Heat of formation + Delta-G solvation = 44.860161 kcal Electronic energy + Delta-G solvation = -19485.419135 eV Core-core repulsion = 16408.281573 eV Total energy + Delta-G solvation = -3077.137562 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.72857 -37.74640 -36.21360 -34.97136 -34.01698 -33.07746 -29.98571 -29.54423 -28.70702 -27.54482 -24.85734 -22.36460 -21.86686 -20.81170 -20.23813 -17.71169 -17.38605 -16.93517 -16.33111 -15.58725 -15.12909 -14.57598 -14.07058 -13.97142 -13.76659 -13.49064 -13.13634 -12.70967 -12.10942 -11.94904 -11.85132 -11.84592 -11.61674 -11.21858 -11.04808 -10.90405 -10.54804 -10.44992 -10.33790 -9.86974 -9.81601 -9.43565 -9.14297 -8.01483 -7.61721 -7.37909 -6.79674 -6.40199 -4.30347 1.71279 1.76915 2.64932 2.73419 2.98864 3.06024 3.07794 3.17045 3.79556 3.91071 4.12538 4.18707 4.59221 5.07254 5.45219 5.61944 5.73165 5.78099 6.07297 6.14032 6.20700 6.33241 6.48512 6.73514 6.81347 6.90320 7.00370 7.05983 7.19262 7.34712 7.52452 7.55246 7.75083 7.82784 7.97430 8.12465 8.28516 8.40001 8.58329 8.84154 8.93211 10.15756 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.018753 B = 0.004743 C = 0.003890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.748872 B = 5902.318115 C = 7196.908836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.075 3.925 3 Si 0.909 3.091 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.458 4.458 8 H 0.077 0.923 9 C 0.103 3.897 10 C -0.211 4.211 11 C -0.108 4.108 12 C 0.012 3.988 13 N -0.668 5.668 14 C 0.167 3.833 15 C -0.145 4.145 16 C -0.037 4.037 17 Cl -0.085 7.085 18 C -0.132 4.132 19 C -0.152 4.152 20 C 0.142 3.858 21 N -0.884 5.884 22 C -0.116 4.116 23 C -0.146 4.146 24 H 0.282 0.718 25 H 0.095 0.905 26 H 0.088 0.912 27 H 0.389 0.611 28 H 0.151 0.849 29 H 0.122 0.878 30 H 0.122 0.878 31 H 0.391 0.609 32 H 0.396 0.604 33 H 0.096 0.904 34 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.748 -10.262 -3.669 12.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.488 4.488 8 H 0.095 0.905 9 C 0.100 3.900 10 C -0.231 4.231 11 C -0.129 4.129 12 C -0.082 4.082 13 N -0.289 5.289 14 C 0.062 3.938 15 C -0.169 4.169 16 C -0.066 4.066 17 Cl -0.057 7.057 18 C -0.154 4.154 19 C -0.176 4.176 20 C 0.037 3.963 21 N -0.427 5.427 22 C -0.136 4.136 23 C -0.166 4.166 24 H 0.093 0.907 25 H 0.113 0.887 26 H 0.106 0.894 27 H 0.224 0.776 28 H 0.169 0.831 29 H 0.140 0.860 30 H 0.140 0.860 31 H 0.219 0.781 32 H 0.224 0.776 33 H 0.114 0.886 34 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.015 -9.761 -3.529 11.997 hybrid contribution 0.648 0.248 -0.075 0.698 sum -5.367 -9.513 -3.604 11.502 Atomic orbital electron populations 1.69843 1.07467 1.29454 1.34792 1.25906 0.94774 1.01313 0.92351 0.86358 0.80125 0.80260 0.79948 1.18836 1.20289 1.19026 1.19489 0.97611 0.91165 1.40513 0.90458 1.17640 0.91311 0.92058 0.88978 1.20578 1.03590 0.92582 1.06356 1.20137 0.97366 0.97113 0.98235 1.17051 0.99118 0.85029 1.06964 1.41319 1.01324 1.12090 1.74191 1.17278 0.84313 0.93253 0.98984 1.20860 0.91565 1.00525 1.03952 1.20370 0.91397 0.90018 1.04789 1.98335 1.73808 1.45727 1.87785 1.20430 0.99377 0.92472 1.03083 1.20128 0.90929 0.99582 1.06920 1.17361 0.91100 0.88321 0.99501 1.42146 1.08062 1.18015 1.74467 1.20469 1.00297 0.92286 1.00583 1.20985 0.98601 0.96632 1.00392 0.90677 0.88716 0.89354 0.77640 0.83126 0.85972 0.85988 0.78102 0.77642 0.88632 0.86045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.14 10.92 55.54 0.61 -19.53 16 2 C 0.07 1.84 5.16 -17.34 -0.09 1.75 16 3 Si 0.91 18.38 29.59 -169.99 -5.03 13.35 16 4 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 5 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 6 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 7 C -0.46 -11.84 9.03 -37.90 -0.34 -12.18 16 8 H 0.08 1.91 7.90 -52.49 -0.41 1.50 16 9 C 0.10 2.66 5.57 -106.79 -0.59 2.06 16 10 C -0.21 -4.98 9.74 -39.27 -0.38 -5.36 16 11 C -0.11 -2.31 9.90 -39.76 -0.39 -2.71 16 12 C 0.01 0.25 5.90 -83.70 -0.49 -0.24 16 13 N -0.67 -11.57 5.41 -8.17 -0.04 -11.62 16 14 C 0.17 2.86 6.43 -83.53 -0.54 2.33 16 15 C -0.14 -2.70 7.76 -39.36 -0.31 -3.00 16 16 C -0.04 -0.62 6.32 -39.50 -0.25 -0.87 16 17 Cl -0.09 -1.39 28.95 -51.86 -1.50 -2.89 16 18 C -0.13 -1.88 9.82 -39.51 -0.39 -2.27 16 19 C -0.15 -1.99 9.89 -39.42 -0.39 -2.38 16 20 C 0.14 2.01 6.78 -83.49 -0.57 1.44 16 21 N -0.88 -9.26 9.08 32.55 0.30 -8.96 16 22 C -0.12 -2.65 7.28 -39.76 -0.29 -2.94 16 23 C -0.15 -3.69 8.63 -39.27 -0.34 -4.03 16 24 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 25 H 0.09 2.10 8.06 -52.49 -0.42 1.68 16 26 H 0.09 1.66 8.06 -52.49 -0.42 1.23 16 27 H 0.39 5.65 7.04 -40.82 -0.29 5.36 16 28 H 0.15 3.22 5.34 -52.49 -0.28 2.94 16 29 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 30 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 31 H 0.39 3.77 7.03 -40.82 -0.29 3.49 16 32 H 0.40 3.13 8.85 -40.82 -0.36 2.77 16 33 H 0.10 2.11 6.58 -52.48 -0.35 1.76 16 34 H 0.12 3.19 6.16 -52.49 -0.32 2.87 16 LS Contribution 302.90 15.07 4.56 4.56 Total: -1.00 -27.04 302.90 -9.59 -36.64 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: -3.12 Total: 16.84 kcal Atomic # 6 Polarization: -23.03 SS G_CDS: -5.36 Total: -28.39 kcal Atomic # 7 Polarization: -40.97 SS G_CDS: 0.86 Total: -40.11 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.03 Total: 13.35 kcal Atomic # 17 Polarization: -1.39 SS G_CDS: -1.50 Total: -2.89 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -27.04 -9.59 -36.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124569506.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.498 kcal (2) G-P(sol) polarization free energy of solvation -27.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds