Wall clock time and date at job start Tue Mar 31 2020 05:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30926 * 1 3 3 Si 1.86797 * 120.00324 * 2 1 4 4 H 1.48504 * 109.47337 * 240.00290 * 3 2 1 5 5 H 1.48500 * 109.46891 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47284 * 119.99954 * 3 2 1 7 7 C 1.39828 * 119.99815 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99844 * 196.39270 * 7 2 1 9 9 C 1.41095 * 120.00299 * 16.38534 * 7 2 1 10 10 C 1.40912 * 120.15470 * 205.47227 * 9 7 2 11 11 C 1.36292 * 119.84255 * 180.02562 * 10 9 7 12 12 C 1.39634 * 120.15379 * 359.97438 * 11 10 9 13 13 N 1.38726 * 119.84310 * 179.97438 * 12 11 10 14 14 C 1.39807 * 119.99742 * 139.31155 * 13 12 11 15 15 C 1.38775 * 120.10118 * 351.95388 * 14 13 12 16 16 C 1.38291 * 119.98262 * 179.76993 * 15 14 13 17 17 Cl 1.73596 * 119.91189 * 180.27403 * 16 15 14 18 18 C 1.38413 * 120.18322 * 0.50754 * 16 15 14 19 19 C 1.38245 * 120.19957 * 359.74348 * 18 16 15 20 20 C 1.38671 * 120.01839 * 359.97438 * 19 18 16 21 21 N 1.39953 * 120.09378 * 180.02562 * 20 19 18 22 22 C 1.39630 * 120.30778 * 0.26422 * 12 11 10 23 23 C 1.36293 * 120.15739 * 359.47536 * 22 12 11 24 24 H 0.97003 * 119.99436 * 359.97438 * 1 2 3 25 25 H 1.07995 * 120.07336 * 359.97438 * 10 9 7 26 26 H 1.07996 * 119.92227 * 179.97438 * 11 10 9 27 27 H 0.97000 * 120.00248 * 319.03637 * 13 12 11 28 28 H 1.07996 * 120.00486 * 0.02562 * 15 14 13 29 29 H 1.07996 * 119.90119 * 179.72946 * 18 16 15 30 30 H 1.08006 * 119.99293 * 179.97438 * 19 18 16 31 31 H 0.97001 * 120.00237 * 179.97438 * 21 20 19 32 32 H 0.97007 * 120.00222 * 359.97438 * 21 20 19 33 33 H 1.08005 * 119.92151 * 179.73752 * 22 12 11 34 34 H 1.08000 * 120.08356 * 180.25637 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3093 0.0000 0.0000 3 14 2.2433 1.6177 0.0000 4 1 3.0971 1.6964 -1.2126 5 1 1.2784 2.7464 0.0006 6 1 3.0971 1.6963 1.2125 7 6 2.0084 -1.2110 -0.0005 8 1 3.0554 -1.2301 0.2634 9 6 1.3459 -2.4079 -0.3458 10 6 1.8188 -3.6438 0.1387 11 6 1.1743 -4.7962 -0.1992 12 6 0.0476 -4.7540 -1.0230 13 7 -0.6032 -5.9310 -1.3633 14 6 -2.0002 -5.9735 -1.3940 15 6 -2.7398 -4.8966 -0.9260 16 6 -4.1216 -4.9393 -0.9620 17 17 -5.0449 -3.5882 -0.3826 18 6 -4.7706 -6.0584 -1.4542 19 6 -4.0414 -7.1376 -1.9176 20 6 -2.6554 -7.1013 -1.8908 21 7 -1.9157 -8.1927 -2.3600 22 6 -0.4236 -3.5334 -1.5106 23 6 0.2081 -2.3728 -1.1764 24 1 -0.4849 0.8401 0.0004 25 1 2.6904 -3.6777 0.7755 26 1 1.5359 -5.7441 0.1710 27 1 -0.0889 -6.7233 -1.5838 28 1 -2.2363 -4.0237 -0.5376 29 1 -5.8499 -6.0886 -1.4762 30 1 -4.5513 -8.0093 -2.3006 31 1 -0.9462 -8.1657 -2.3410 32 1 -2.3724 -8.9763 -2.7043 33 1 -1.2931 -3.5085 -2.1507 34 1 -0.1598 -1.4290 -1.5509 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124569506.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:52 Heat of formation + Delta-G solvation = 30.144979 kcal Electronic energy + Delta-G solvation = -19486.057233 eV Core-core repulsion = 16408.281573 eV Total energy + Delta-G solvation = -3077.775660 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.06463 -39.37632 -37.49427 -36.52448 -35.16169 -34.73796 -31.62620 -31.24320 -30.13132 -28.84445 -26.58320 -23.78478 -23.33021 -22.37839 -21.85831 -19.27702 -18.91215 -18.22361 -17.62940 -17.07688 -16.64082 -15.93908 -15.68201 -15.31307 -15.16937 -14.80102 -14.61989 -14.37643 -13.86450 -13.62377 -13.42442 -13.06630 -12.99048 -12.79646 -12.63564 -12.42095 -12.18409 -11.90568 -11.74746 -11.56059 -11.25702 -11.03232 -10.82425 -9.53102 -9.42663 -8.81542 -8.60052 -7.77099 -6.19462 0.46586 0.51847 1.02744 1.13495 1.39060 1.40714 1.50215 1.54479 2.21984 2.55895 2.72575 2.93939 3.09451 3.73399 3.94739 4.33980 4.38492 4.43443 4.50326 4.61915 4.85528 5.02797 5.08730 5.14627 5.21202 5.28826 5.36603 5.54956 5.60077 5.70963 5.82842 5.96413 6.09541 6.28027 6.44250 6.60949 6.77212 6.95640 6.99185 7.04561 7.13698 8.35981 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.018753 B = 0.004743 C = 0.003890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.748872 B = 5902.318115 C = 7196.908836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.034 3.966 3 Si 0.980 3.020 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.259 1.259 7 C -0.497 4.497 8 H 0.077 0.923 9 C 0.069 3.931 10 C -0.220 4.220 11 C -0.112 4.112 12 C 0.037 3.963 13 N -0.665 5.665 14 C 0.140 3.860 15 C -0.166 4.166 16 C -0.059 4.059 17 Cl -0.093 7.093 18 C -0.117 4.117 19 C -0.147 4.147 20 C 0.159 3.841 21 N -0.867 5.867 22 C -0.119 4.119 23 C -0.167 4.167 24 H 0.286 0.714 25 H 0.103 0.897 26 H 0.122 0.878 27 H 0.406 0.594 28 H 0.113 0.887 29 H 0.148 0.852 30 H 0.164 0.836 31 H 0.397 0.603 32 H 0.413 0.587 33 H 0.096 0.904 34 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.454 -13.019 -4.449 15.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.181 4.181 3 Si 0.801 3.199 4 H -0.184 1.184 5 H -0.195 1.195 6 H -0.183 1.183 7 C -0.526 4.526 8 H 0.095 0.905 9 C 0.067 3.933 10 C -0.240 4.240 11 C -0.132 4.132 12 C -0.058 4.058 13 N -0.290 5.290 14 C 0.036 3.964 15 C -0.190 4.190 16 C -0.088 4.088 17 Cl -0.064 7.064 18 C -0.138 4.138 19 C -0.171 4.171 20 C 0.052 3.948 21 N -0.411 5.411 22 C -0.139 4.139 23 C -0.187 4.187 24 H 0.097 0.903 25 H 0.122 0.878 26 H 0.140 0.860 27 H 0.243 0.757 28 H 0.131 0.869 29 H 0.166 0.834 30 H 0.181 0.819 31 H 0.226 0.774 32 H 0.244 0.756 33 H 0.114 0.886 34 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.733 -12.599 -4.331 14.927 hybrid contribution 0.696 0.808 0.104 1.071 sum -6.038 -11.791 -4.227 13.905 Atomic orbital electron populations 1.69924 1.08948 1.30418 1.36161 1.26731 0.95454 1.04482 0.91409 0.85278 0.78739 0.75797 0.80061 1.18443 1.19510 1.18315 1.19730 0.97873 0.92348 1.42684 0.90473 1.17949 0.92107 0.93255 0.90030 1.20796 1.04053 0.92700 1.06415 1.20435 0.97181 0.97840 0.97774 1.17086 0.98223 0.85797 1.04654 1.41093 1.01713 1.11297 1.74847 1.17377 0.83871 0.94324 1.00805 1.20666 0.92673 1.00126 1.05568 1.20504 0.90852 0.90990 1.06481 1.98326 1.73702 1.46420 1.87997 1.20801 1.00808 0.91415 1.00798 1.20585 0.90449 1.00351 1.05671 1.17447 0.91759 0.87928 0.97642 1.42136 1.08464 1.17407 1.73082 1.20499 1.00135 0.92614 1.00687 1.20879 0.99547 0.96665 1.01637 0.90335 0.87847 0.85974 0.75715 0.86908 0.83439 0.81893 0.77370 0.75616 0.88570 0.88219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.54 10.92 21.81 0.24 -44.31 16 2 C 0.03 1.72 5.16 85.21 0.44 2.16 16 3 Si 0.98 38.85 29.59 68.60 2.03 40.88 16 4 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 5 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 6 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 7 C -0.50 -26.91 9.03 23.36 0.21 -26.70 16 8 H 0.08 3.99 7.90 -2.91 -0.02 3.97 16 9 C 0.07 3.74 5.57 -21.27 -0.12 3.63 16 10 C -0.22 -10.57 9.74 22.47 0.22 -10.35 16 11 C -0.11 -4.72 9.90 22.15 0.22 -4.50 16 12 C 0.04 1.57 5.90 38.72 0.23 1.80 16 13 N -0.66 -21.95 5.41 -179.75 -0.97 -22.93 16 14 C 0.14 4.57 6.43 38.32 0.25 4.82 16 15 C -0.17 -6.21 7.76 22.41 0.17 -6.04 16 16 C -0.06 -1.94 6.32 22.32 0.14 -1.80 16 17 Cl -0.09 -3.06 28.95 -2.72 -0.08 -3.14 16 18 C -0.12 -2.97 9.82 22.31 0.22 -2.75 16 19 C -0.15 -3.18 9.89 22.37 0.22 -2.95 16 20 C 0.16 3.91 6.78 38.27 0.26 4.17 16 21 N -0.87 -14.23 9.08 -50.94 -0.46 -14.69 16 22 C -0.12 -5.63 7.28 22.15 0.16 -5.47 16 23 C -0.17 -8.95 8.63 22.47 0.19 -8.76 16 24 H 0.29 14.09 8.30 -92.71 -0.77 13.32 16 25 H 0.10 4.66 8.06 -2.91 -0.02 4.64 16 26 H 0.12 4.28 8.06 -2.91 -0.02 4.26 16 27 H 0.41 10.61 7.04 -92.71 -0.65 9.96 16 28 H 0.11 5.07 5.34 -2.91 -0.02 5.06 16 29 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 30 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 31 H 0.40 5.99 7.03 -92.71 -0.65 5.33 16 32 H 0.41 4.33 8.85 -92.70 -0.82 3.51 16 33 H 0.10 4.45 6.58 -2.91 -0.02 4.43 16 34 H 0.10 5.67 6.16 -2.91 -0.02 5.65 16 Total: -1.00 -62.28 302.90 2.63 -59.66 By element: Atomic # 1 Polarization: 38.20 SS G_CDS: -0.94 Total: 37.26 kcal Atomic # 6 Polarization: -55.55 SS G_CDS: 2.81 Total: -52.74 kcal Atomic # 7 Polarization: -80.72 SS G_CDS: -1.20 Total: -81.92 kcal Atomic # 14 Polarization: 38.85 SS G_CDS: 2.03 Total: 40.88 kcal Atomic # 17 Polarization: -3.06 SS G_CDS: -0.08 Total: -3.14 kcal Total: -62.28 2.63 -59.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124569506.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.802 kcal (2) G-P(sol) polarization free energy of solvation -62.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds