Wall clock time and date at job start Tue Mar 31 2020 05:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30045 * 122.50218 * 2 1 4 4 C 1.31043 * 117.48611 * 180.02562 * 3 2 1 5 5 N 1.36968 * 125.17532 * 179.97438 * 4 3 2 6 6 C 1.34771 * 120.00118 * 359.75566 * 5 4 3 7 7 O 1.22037 * 119.99938 * 0.26493 * 6 5 4 8 8 C 1.39895 * 120.00118 * 180.27714 * 6 5 4 9 9 H 1.08007 * 120.00213 * 359.97438 * 8 6 5 10 10 C 1.39977 * 120.00324 * 179.97438 * 8 6 5 11 11 N 1.30738 * 119.99683 * 359.97438 * 10 8 6 12 12 Si 1.86800 * 120.00175 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.46992 * 59.99757 * 12 10 8 14 14 H 1.48501 * 109.46871 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.46790 * 299.99928 * 12 10 8 16 16 S 1.76089 * 109.64835 * 0.23002 * 4 3 2 17 17 C 1.38381 * 122.50219 * 180.02562 * 2 1 3 18 18 C 1.47025 * 126.07094 * 359.97438 * 17 2 1 19 19 C 1.40165 * 120.18495 * 47.24053 * 18 17 2 20 20 C 1.37767 * 119.80047 * 179.74855 * 19 18 17 21 21 C 1.38549 * 120.19208 * 0.54693 * 20 19 18 22 22 C 1.38545 * 120.38858 * 359.70975 * 21 20 19 23 23 C 1.37764 * 120.19124 * 0.02562 * 22 21 20 24 24 H 1.09003 * 109.47160 * 95.25472 * 1 2 3 25 25 H 1.09001 * 109.47003 * 215.25135 * 1 2 3 26 26 H 1.08996 * 109.46967 * 335.25287 * 1 2 3 27 27 H 0.97006 * 119.99367 * 180.02562 * 5 4 3 28 28 H 0.97000 * 119.99664 * 180.02562 * 11 10 8 29 29 H 1.07998 * 120.10543 * 359.97438 * 19 18 17 30 30 H 1.07998 * 119.90735 * 180.25044 * 20 19 18 31 31 H 1.07997 * 119.80743 * 179.71644 * 21 20 19 32 32 H 1.07993 * 119.90421 * 180.02562 * 22 21 20 33 33 H 1.08008 * 120.09622 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2058 1.0968 0.0000 4 6 3.5112 0.9822 -0.0005 5 7 4.3951 2.0285 -0.0011 6 6 3.9384 3.2964 -0.0061 7 8 2.7373 3.5124 -0.0053 8 6 4.8412 4.3651 -0.0126 9 1 5.9043 4.1740 -0.0131 10 6 4.3670 5.6820 -0.0184 11 7 3.0802 5.9134 -0.0183 12 14 5.5725 7.1089 -0.0263 13 1 6.4256 7.0295 -1.2392 14 1 4.8224 8.3906 -0.0323 15 1 6.4278 7.0409 1.1858 16 16 3.9560 -0.7216 -0.0078 17 6 2.2506 -1.1671 -0.0005 18 6 1.7135 -2.5357 -0.0006 19 6 0.6900 -2.8910 -0.8899 20 6 0.1961 -4.1772 -0.8867 21 6 0.7004 -5.1150 -0.0003 22 6 1.7084 -4.7709 0.8858 23 6 2.2177 -3.4909 0.8926 24 1 -0.3633 -0.0941 -1.0234 25 1 -0.3633 -0.8392 0.5931 26 1 -0.3633 0.9333 0.4302 27 1 5.3499 1.8567 -0.0018 28 1 2.7516 6.8260 -0.0227 29 1 0.2921 -2.1599 -1.5780 30 1 -0.5897 -4.4539 -1.5739 31 1 0.3055 -6.1202 0.0000 32 1 2.0960 -5.5082 1.5730 33 1 3.0037 -3.2244 1.5837 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132035577.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:04 Heat of formation + Delta-G solvation = 33.419575 kcal Electronic energy + Delta-G solvation = -19144.529186 eV Core-core repulsion = 16068.939230 eV Total energy + Delta-G solvation = -3075.589957 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.48497 -38.73006 -37.37396 -33.98096 -32.53275 -31.88867 -30.95332 -29.65262 -27.28858 -26.38449 -23.57229 -22.37777 -22.04086 -20.64196 -18.89820 -17.75445 -17.09821 -16.32488 -15.87983 -15.54433 -14.97917 -14.84052 -14.30774 -14.04215 -13.44368 -13.42698 -13.06422 -12.86020 -12.64398 -12.62582 -12.02466 -11.87567 -11.49511 -11.20717 -11.18471 -11.09592 -10.76210 -10.75873 -10.44952 -9.73771 -9.11032 -8.95141 -8.91204 -8.80311 -8.43597 -7.69176 -6.92080 -6.47087 -5.06104 0.86902 1.45623 1.54062 1.75540 2.36835 3.01141 3.06807 3.09074 3.52077 3.87104 3.92462 4.17626 4.34583 4.96203 4.97177 5.01756 5.20286 5.21437 5.49274 5.57533 5.63217 5.67433 5.92395 6.02002 6.04058 6.13811 6.28361 6.48205 6.53091 6.65465 6.78644 7.02850 7.10314 7.27475 7.75152 7.84170 8.55370 8.65828 9.10147 10.26231 10.46694 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.044763 B = 0.003538 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.370646 B = 7913.165655 C = 8386.981101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.147 3.853 3 N -0.486 5.486 4 C 0.359 3.641 5 N -0.631 5.631 6 C 0.526 3.474 7 O -0.515 6.515 8 C -0.530 4.530 9 H 0.072 0.928 10 C 0.086 3.914 11 N -0.737 5.737 12 Si 0.918 3.082 13 H -0.265 1.265 14 H -0.277 1.277 15 H -0.265 1.265 16 S 0.017 5.983 17 C -0.279 4.279 18 C 0.030 3.970 19 C -0.110 4.110 20 C -0.117 4.117 21 C -0.133 4.133 22 C -0.117 4.117 23 C -0.118 4.118 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.404 0.596 28 H 0.276 0.724 29 H 0.124 0.876 30 H 0.121 0.879 31 H 0.117 0.883 32 H 0.119 0.881 33 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.897 -15.764 -0.053 15.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.008 3.992 3 N -0.208 5.208 4 C -0.009 4.009 5 N -0.279 5.279 6 C 0.333 3.667 7 O -0.392 6.392 8 C -0.565 4.565 9 H 0.090 0.910 10 C -0.139 4.139 11 N -0.365 5.365 12 Si 0.742 3.258 13 H -0.189 1.189 14 H -0.202 1.202 15 H -0.189 1.189 16 S 0.270 5.730 17 C -0.403 4.403 18 C 0.027 3.973 19 C -0.130 4.130 20 C -0.135 4.135 21 C -0.152 4.152 22 C -0.135 4.135 23 C -0.137 4.137 24 H 0.092 0.908 25 H 0.089 0.911 26 H 0.097 0.903 27 H 0.239 0.761 28 H 0.087 0.913 29 H 0.142 0.858 30 H 0.139 0.861 31 H 0.135 0.865 32 H 0.137 0.863 33 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.019 -15.230 -0.053 15.264 hybrid contribution 0.431 0.536 0.014 0.688 sum -0.588 -14.695 -0.039 14.706 Atomic orbital electron populations 1.20408 0.87871 1.03231 1.02318 1.20946 0.97408 0.85008 0.95860 1.66338 1.02049 1.28192 1.24171 1.25025 0.90248 0.90036 0.95610 1.44324 1.07566 1.04958 1.71019 1.16939 0.90316 0.79278 0.80146 1.90875 1.15748 1.80723 1.51837 1.19571 0.94141 0.90329 1.52464 0.90966 1.25760 0.95550 1.00022 0.92548 1.70055 1.13707 1.21969 1.30736 0.86240 0.80456 0.79317 0.79777 1.18927 1.20193 1.18919 1.84511 1.08271 1.03825 1.76417 1.23773 0.92748 0.96065 1.27671 1.17894 0.94947 0.89721 0.94724 1.21385 0.96998 0.96281 0.98315 1.21034 1.00073 0.93297 0.99096 1.21198 0.97837 0.99318 0.96859 1.21006 0.97245 0.96119 0.99143 1.21411 1.00602 0.93149 0.98531 0.90837 0.91078 0.90316 0.76087 0.91257 0.85806 0.86149 0.86475 0.86274 0.86163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.27 8.95 36.01 0.32 -0.95 16 2 C 0.15 2.91 6.81 -83.29 -0.57 2.34 16 3 N -0.49 -11.60 8.52 -9.48 -0.08 -11.68 16 4 C 0.36 7.91 8.21 -88.14 -0.72 7.19 16 5 N -0.63 -14.24 5.31 -15.06 -0.08 -14.32 16 6 C 0.53 14.55 7.46 -15.64 -0.12 14.44 16 7 O -0.51 -16.38 13.42 4.88 0.07 -16.32 16 8 C -0.53 -14.00 9.21 -38.31 -0.35 -14.35 16 9 H 0.07 1.68 7.85 -52.48 -0.41 1.27 16 10 C 0.09 2.24 5.49 -17.37 -0.10 2.14 16 11 N -0.74 -20.95 11.69 55.55 0.65 -20.30 16 12 Si 0.92 18.76 29.56 -169.99 -5.02 13.74 16 13 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 14 H -0.28 -5.55 7.11 56.52 0.40 -5.14 16 15 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 16 S 0.02 0.29 23.40 -107.50 -2.52 -2.23 16 17 C -0.28 -4.90 6.07 -35.97 -0.22 -5.12 16 18 C 0.03 0.44 5.39 -104.89 -0.57 -0.12 16 19 C -0.11 -1.43 8.65 -39.03 -0.34 -1.77 16 20 C -0.12 -1.27 10.03 -39.64 -0.40 -1.67 16 21 C -0.13 -1.38 10.05 -39.35 -0.40 -1.78 16 22 C -0.12 -1.30 10.03 -39.64 -0.40 -1.70 16 23 C -0.12 -1.56 9.79 -39.04 -0.38 -1.94 16 24 H 0.07 1.04 7.72 -51.93 -0.40 0.64 16 25 H 0.07 0.98 7.48 -51.93 -0.39 0.59 16 26 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 27 H 0.40 7.43 8.76 -40.82 -0.36 7.07 16 28 H 0.28 7.07 8.29 -40.82 -0.34 6.73 16 29 H 0.12 1.54 7.16 -52.49 -0.38 1.16 16 30 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 31 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 32 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.12 1.54 8.06 -52.48 -0.42 1.12 16 LS Contribution 307.00 15.07 4.63 4.63 Total: -1.00 -33.62 307.00 -9.77 -43.39 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -3.18 Total: 6.38 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -4.23 Total: -3.29 kcal Atomic # 7 Polarization: -46.79 SS G_CDS: 0.49 Total: -46.30 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: 0.07 Total: -16.32 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.02 Total: 13.74 kcal Atomic # 16 Polarization: 0.29 SS G_CDS: -2.52 Total: -2.23 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -33.62 -9.77 -43.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132035577.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.811 kcal (2) G-P(sol) polarization free energy of solvation -33.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds