Wall clock time and date at job start Tue Mar 31 2020 05:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30045 * 122.50218 * 2 1 4 4 C 1.31043 * 117.48611 * 180.02562 * 3 2 1 5 5 N 1.36968 * 125.17532 * 179.97438 * 4 3 2 6 6 C 1.34771 * 120.00118 * 359.75566 * 5 4 3 7 7 O 1.22037 * 119.99938 * 0.26493 * 6 5 4 8 8 C 1.39895 * 120.00118 * 180.27714 * 6 5 4 9 9 H 1.08007 * 120.00213 * 359.97438 * 8 6 5 10 10 C 1.39977 * 120.00324 * 179.97438 * 8 6 5 11 11 N 1.30738 * 119.99683 * 359.97438 * 10 8 6 12 12 Si 1.86800 * 120.00175 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.46992 * 59.99757 * 12 10 8 14 14 H 1.48501 * 109.46871 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.46790 * 299.99928 * 12 10 8 16 16 S 1.76089 * 109.64835 * 0.23002 * 4 3 2 17 17 C 1.38381 * 122.50219 * 180.02562 * 2 1 3 18 18 C 1.47025 * 126.07094 * 359.97438 * 17 2 1 19 19 C 1.40165 * 120.18495 * 47.24053 * 18 17 2 20 20 C 1.37767 * 119.80047 * 179.74855 * 19 18 17 21 21 C 1.38549 * 120.19208 * 0.54693 * 20 19 18 22 22 C 1.38545 * 120.38858 * 359.70975 * 21 20 19 23 23 C 1.37764 * 120.19124 * 0.02562 * 22 21 20 24 24 H 1.09003 * 109.47160 * 95.25472 * 1 2 3 25 25 H 1.09001 * 109.47003 * 215.25135 * 1 2 3 26 26 H 1.08996 * 109.46967 * 335.25287 * 1 2 3 27 27 H 0.97006 * 119.99367 * 180.02562 * 5 4 3 28 28 H 0.97000 * 119.99664 * 180.02562 * 11 10 8 29 29 H 1.07998 * 120.10543 * 359.97438 * 19 18 17 30 30 H 1.07998 * 119.90735 * 180.25044 * 20 19 18 31 31 H 1.07997 * 119.80743 * 179.71644 * 21 20 19 32 32 H 1.07993 * 119.90421 * 180.02562 * 22 21 20 33 33 H 1.08008 * 120.09622 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2058 1.0968 0.0000 4 6 3.5112 0.9822 -0.0005 5 7 4.3951 2.0285 -0.0011 6 6 3.9384 3.2964 -0.0061 7 8 2.7373 3.5124 -0.0053 8 6 4.8412 4.3651 -0.0126 9 1 5.9043 4.1740 -0.0131 10 6 4.3670 5.6820 -0.0184 11 7 3.0802 5.9134 -0.0183 12 14 5.5725 7.1089 -0.0263 13 1 6.4256 7.0295 -1.2392 14 1 4.8224 8.3906 -0.0323 15 1 6.4278 7.0409 1.1858 16 16 3.9560 -0.7216 -0.0078 17 6 2.2506 -1.1671 -0.0005 18 6 1.7135 -2.5357 -0.0006 19 6 0.6900 -2.8910 -0.8899 20 6 0.1961 -4.1772 -0.8867 21 6 0.7004 -5.1150 -0.0003 22 6 1.7084 -4.7709 0.8858 23 6 2.2177 -3.4909 0.8926 24 1 -0.3633 -0.0941 -1.0234 25 1 -0.3633 -0.8392 0.5931 26 1 -0.3633 0.9333 0.4302 27 1 5.3499 1.8567 -0.0018 28 1 2.7516 6.8260 -0.0227 29 1 0.2921 -2.1599 -1.5780 30 1 -0.5897 -4.4539 -1.5739 31 1 0.3055 -6.1202 0.0000 32 1 2.0960 -5.5082 1.5730 33 1 3.0037 -3.2244 1.5837 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132035577.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:03 Heat of formation + Delta-G solvation = 12.077120 kcal Electronic energy + Delta-G solvation = -19145.454664 eV Core-core repulsion = 16068.939230 eV Total energy + Delta-G solvation = -3076.515435 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.01020 -39.97070 -39.03326 -35.77088 -34.53458 -33.18994 -31.89945 -30.96099 -29.20959 -27.68719 -25.28290 -23.33860 -23.19246 -22.31774 -20.54651 -19.32773 -18.58208 -17.82647 -17.40342 -17.09211 -16.30424 -16.16085 -15.70007 -15.51374 -14.81062 -14.73494 -14.54456 -14.26353 -14.07741 -13.75405 -13.44235 -13.26999 -13.22550 -12.76294 -12.74222 -12.32976 -12.16858 -12.07043 -11.92089 -11.32212 -10.91510 -10.65275 -10.35146 -9.83866 -9.76016 -9.57416 -8.45733 -8.42010 -7.11630 -0.46804 0.03155 0.43759 0.55098 1.00040 1.39849 1.41857 1.56140 1.96550 2.18604 2.42946 2.61445 2.94517 3.61392 3.70245 3.88875 4.04746 4.14480 4.29580 4.33711 4.60041 4.68996 4.70338 4.77449 4.83745 5.09145 5.15432 5.20000 5.29910 5.61139 5.64231 5.65487 5.69163 5.84414 5.98879 6.11911 6.65265 6.89366 7.37957 8.32408 8.50821 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.044763 B = 0.003538 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.370646 B = 7913.165655 C = 8386.981101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.102 3.898 3 N -0.532 5.532 4 C 0.307 3.693 5 N -0.634 5.634 6 C 0.515 3.485 7 O -0.573 6.573 8 C -0.554 4.554 9 H 0.099 0.901 10 C 0.029 3.971 11 N -0.794 5.794 12 Si 1.008 2.992 13 H -0.251 1.251 14 H -0.273 1.273 15 H -0.251 1.251 16 S 0.096 5.904 17 C -0.251 4.251 18 C -0.009 4.009 19 C -0.114 4.114 20 C -0.116 4.116 21 C -0.120 4.120 22 C -0.118 4.118 23 C -0.125 4.125 24 H 0.088 0.912 25 H 0.093 0.907 26 H 0.056 0.944 27 H 0.420 0.580 28 H 0.281 0.719 29 H 0.123 0.877 30 H 0.149 0.851 31 H 0.152 0.848 32 H 0.147 0.853 33 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.015 -18.749 -0.146 18.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.036 4.036 3 N -0.254 5.254 4 C -0.060 4.060 5 N -0.283 5.283 6 C 0.323 3.677 7 O -0.455 6.455 8 C -0.589 4.589 9 H 0.117 0.883 10 C -0.190 4.190 11 N -0.422 5.422 12 Si 0.826 3.174 13 H -0.174 1.174 14 H -0.198 1.198 15 H -0.174 1.174 16 S 0.351 5.649 17 C -0.375 4.375 18 C -0.012 4.012 19 C -0.134 4.134 20 C -0.134 4.134 21 C -0.138 4.138 22 C -0.135 4.135 23 C -0.145 4.145 24 H 0.106 0.894 25 H 0.111 0.889 26 H 0.075 0.925 27 H 0.258 0.742 28 H 0.092 0.908 29 H 0.141 0.859 30 H 0.167 0.833 31 H 0.169 0.831 32 H 0.165 0.835 33 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.084 -18.301 -0.146 18.302 hybrid contribution 0.050 1.020 0.039 1.022 sum -0.033 -17.281 -0.107 17.281 Atomic orbital electron populations 1.20409 0.86060 1.02914 1.03474 1.21348 0.98811 0.84836 0.98564 1.66272 1.03788 1.31250 1.24132 1.25078 0.90260 0.92126 0.98503 1.43573 1.08377 1.04199 1.72170 1.17288 0.89833 0.81109 0.79489 1.90819 1.17845 1.82537 1.54328 1.20158 0.95382 0.90894 1.52477 0.88320 1.27102 0.97530 1.03378 0.90960 1.70233 1.16696 1.23025 1.32293 0.84914 0.77409 0.74475 0.80620 1.17444 1.19787 1.17440 1.84084 1.07454 0.98994 1.74405 1.24403 0.93064 0.97155 1.22844 1.17977 0.97150 0.88614 0.97427 1.21494 0.96365 0.97542 0.97982 1.21388 1.00311 0.92245 0.99477 1.21676 0.96401 1.00645 0.95115 1.21350 0.97065 0.95549 0.99573 1.21519 1.00766 0.93919 0.98285 0.89355 0.88873 0.92498 0.74198 0.90843 0.85884 0.83312 0.83071 0.83503 0.86295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.31 8.95 71.24 0.64 -1.68 16 2 C 0.10 4.17 6.81 42.86 0.29 4.46 16 3 N -0.53 -26.91 8.52 -183.92 -1.57 -28.48 16 4 C 0.31 14.15 8.21 179.48 1.47 15.62 16 5 N -0.63 -30.00 5.31 -319.63 -1.70 -31.70 16 6 C 0.51 30.08 7.46 84.64 0.63 30.72 16 7 O -0.57 -39.06 13.42 -5.44 -0.07 -39.13 16 8 C -0.55 -30.18 9.21 23.09 0.21 -29.97 16 9 H 0.10 4.62 7.85 -2.91 -0.02 4.60 16 10 C 0.03 1.58 5.49 85.28 0.47 2.05 16 11 N -0.79 -47.37 11.69 21.83 0.26 -47.12 16 12 Si 1.01 38.70 29.56 68.60 2.03 40.73 16 13 H -0.25 -8.99 7.11 99.48 0.71 -8.28 16 14 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 15 H -0.25 -8.99 7.11 99.48 0.71 -8.28 16 16 S 0.10 3.30 23.40 -56.49 -1.32 1.97 16 17 C -0.25 -8.77 6.07 24.61 0.15 -8.62 16 18 C -0.01 -0.25 5.39 -20.04 -0.11 -0.35 16 19 C -0.11 -2.69 8.65 22.63 0.20 -2.50 16 20 C -0.12 -2.06 10.03 22.23 0.22 -1.84 16 21 C -0.12 -1.89 10.05 22.42 0.23 -1.66 16 22 C -0.12 -2.12 10.03 22.23 0.22 -1.89 16 23 C -0.13 -3.01 9.79 22.62 0.22 -2.79 16 24 H 0.09 2.56 7.72 -2.39 -0.02 2.54 16 25 H 0.09 2.57 7.48 -2.39 -0.02 2.55 16 26 H 0.06 2.09 8.14 -2.39 -0.02 2.08 16 27 H 0.42 16.01 8.76 -92.70 -0.81 15.20 16 28 H 0.28 15.10 8.29 -92.71 -0.77 14.33 16 29 H 0.12 2.88 7.16 -2.91 -0.02 2.86 16 30 H 0.15 1.80 8.06 -2.91 -0.02 1.77 16 31 H 0.15 1.42 8.06 -2.91 -0.02 1.39 16 32 H 0.15 1.83 8.06 -2.91 -0.02 1.80 16 33 H 0.12 2.80 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -79.14 307.00 2.81 -76.33 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: 0.35 Total: 25.86 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: 4.84 Total: 1.53 kcal Atomic # 7 Polarization: -104.28 SS G_CDS: -3.01 Total: -107.30 kcal Atomic # 8 Polarization: -39.06 SS G_CDS: -0.07 Total: -39.13 kcal Atomic # 14 Polarization: 38.70 SS G_CDS: 2.03 Total: 40.73 kcal Atomic # 16 Polarization: 3.30 SS G_CDS: -1.32 Total: 1.97 kcal Total: -79.14 2.81 -76.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132035577.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.404 kcal (2) G-P(sol) polarization free energy of solvation -79.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds