Wall clock time and date at job start Tue Mar 31 2020 05:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.41456 * 120.59532 * 2 1 4 4 O 1.22207 * 120.14362 * 359.97438 * 3 2 1 5 5 N 1.34077 * 119.70140 * 179.70906 * 3 2 1 6 6 C 1.31675 * 120.97934 * 0.57823 * 5 3 2 7 7 S 1.76203 * 119.37378 * 179.72582 * 6 5 3 8 8 C 1.76195 * 99.99819 * 359.97346 * 7 6 5 9 9 H 1.07996 * 120.00394 * 0.02562 * 8 7 6 10 10 C 1.38859 * 119.99661 * 180.02562 * 8 7 6 11 11 N 1.31483 * 120.00127 * 180.02562 * 10 8 7 12 12 Si 1.86794 * 120.00367 * 0.02562 * 10 8 7 13 13 H 1.48508 * 109.47417 * 89.99988 * 12 10 8 14 14 H 1.48501 * 109.47394 * 210.00181 * 12 10 8 15 15 H 1.48507 * 109.47106 * 330.00118 * 12 10 8 16 16 N 1.36149 * 121.25279 * 359.70221 * 6 5 3 17 17 H 0.97003 * 119.88743 * 179.97438 * 16 6 5 18 18 C 1.36470 * 120.58749 * 180.27741 * 2 1 3 19 19 C 1.47846 * 120.48906 * 359.97438 * 18 2 1 20 20 C 1.39570 * 120.14510 * 314.71889 * 19 18 2 21 21 C 1.37960 * 119.85392 * 179.72231 * 20 19 18 22 22 C 1.38353 * 120.14352 * 0.56117 * 21 20 19 23 23 C 1.38356 * 120.29415 * 359.71458 * 22 21 20 24 24 C 1.37960 * 120.14384 * 0.02562 * 23 22 21 25 25 H 1.08999 * 109.47015 * 269.72534 * 1 2 3 26 26 H 1.09000 * 109.46646 * 29.71687 * 1 2 3 27 27 H 1.09000 * 109.47248 * 149.72404 * 1 2 3 28 28 H 0.97000 * 120.00449 * 179.97438 * 11 10 8 29 29 H 1.08005 * 120.07079 * 359.97438 * 20 19 18 30 30 H 1.08002 * 119.92573 * 180.25643 * 21 20 19 31 31 H 1.08004 * 119.85303 * 179.70014 * 22 21 20 32 32 H 1.07991 * 119.92972 * 179.97438 * 23 22 21 33 33 H 1.07996 * 120.07432 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2270 1.2176 0.0000 4 8 1.6297 2.2838 -0.0005 5 7 3.5676 1.1967 0.0059 6 6 4.2277 0.0574 0.0004 7 16 5.9896 0.0793 0.0011 8 6 6.2739 1.8182 0.0093 9 1 5.4381 2.5020 0.0126 10 6 7.5728 2.3093 0.0116 11 7 7.7850 3.6069 0.0182 12 14 9.0186 1.1266 0.0052 13 1 9.4015 0.8203 -1.3966 14 1 10.1696 1.7480 0.7082 15 1 8.6341 -0.1290 0.6989 16 7 3.5748 -1.1373 -0.0055 17 1 4.0809 -1.9648 -0.0099 18 6 2.2015 -1.1748 -0.0057 19 6 1.4865 -2.4688 -0.0114 20 6 0.4045 -2.6755 0.8457 21 6 -0.2620 -3.8834 0.8313 22 6 0.1472 -4.8926 -0.0220 23 6 1.2226 -4.6963 -0.8701 24 6 1.8944 -3.4913 -0.8694 25 1 -0.3633 -0.0049 1.0277 26 1 -0.3632 0.8925 -0.5094 27 1 -0.3634 -0.8875 -0.5181 28 1 8.6923 3.9500 0.0202 29 1 0.0872 -1.8902 1.5158 30 1 -1.1020 -4.0431 1.4911 31 1 -0.3749 -5.8380 -0.0259 32 1 1.5373 -5.4882 -1.5334 33 1 2.7334 -3.3391 -1.5322 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132805636.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:46 Heat of formation + Delta-G solvation = 1.130026 kcal Electronic energy + Delta-G solvation = -19408.524123 eV Core-core repulsion = 16331.533986 eV Total energy + Delta-G solvation = -3076.990136 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.35286 -40.00125 -38.64766 -35.53294 -34.83532 -34.06836 -31.93538 -31.35436 -28.68525 -28.04448 -25.37793 -24.57650 -23.40451 -22.54364 -20.56559 -19.51340 -19.04466 -18.23751 -17.47260 -17.16636 -16.91011 -16.43680 -15.96931 -15.64377 -14.91932 -14.64315 -14.50573 -14.45227 -14.29693 -13.91556 -13.69724 -13.49275 -13.20414 -13.09599 -13.03941 -12.28372 -12.18357 -12.16364 -11.95621 -11.73374 -11.30985 -11.16298 -10.03285 -10.02566 -9.88794 -9.55236 -9.20551 -8.55635 -6.45617 -0.40660 -0.05529 0.16638 0.44541 0.64014 1.31103 1.35422 1.42972 1.67709 2.15022 2.33863 2.70229 2.81005 2.87499 3.11676 3.55662 3.81278 3.95103 4.03856 4.19051 4.27457 4.36853 4.52382 4.55103 4.70464 4.82881 4.98218 5.07888 5.11472 5.19670 5.46117 5.48061 5.56777 5.69915 5.82654 5.98406 6.43621 6.72129 6.78301 7.25423 8.58194 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.023029 B = 0.004626 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.589305 B = 6051.518495 C = 7113.515746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.278 4.278 3 C 0.496 3.504 4 O -0.594 6.594 5 N -0.629 5.629 6 C 0.377 3.623 7 S 0.138 5.862 8 C -0.565 4.565 9 H 0.076 0.924 10 C 0.045 3.955 11 N -0.907 5.907 12 Si 0.915 3.085 13 H -0.248 1.248 14 H -0.255 1.255 15 H -0.206 1.206 16 N -0.583 5.583 17 H 0.438 0.562 18 C 0.232 3.768 19 C -0.087 4.087 20 C -0.089 4.089 21 C -0.120 4.120 22 C -0.095 4.095 23 C -0.119 4.119 24 C -0.100 4.100 25 H 0.079 0.921 26 H 0.048 0.952 27 H 0.092 0.908 28 H 0.283 0.717 29 H 0.131 0.869 30 H 0.153 0.847 31 H 0.156 0.844 32 H 0.155 0.845 33 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.466 -26.967 0.038 28.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.291 4.291 3 C 0.289 3.711 4 O -0.480 6.480 5 N -0.378 5.378 6 C 0.005 3.995 7 S 0.374 5.626 8 C -0.713 4.713 9 H 0.094 0.906 10 C -0.162 4.162 11 N -0.542 5.542 12 Si 0.733 3.267 13 H -0.171 1.171 14 H -0.179 1.179 15 H -0.129 1.129 16 N -0.204 5.204 17 H 0.280 0.720 18 C 0.121 3.879 19 C -0.088 4.088 20 C -0.108 4.108 21 C -0.138 4.138 22 C -0.113 4.113 23 C -0.136 4.136 24 C -0.119 4.119 25 H 0.097 0.903 26 H 0.067 0.933 27 H 0.110 0.890 28 H 0.093 0.907 29 H 0.148 0.852 30 H 0.171 0.829 31 H 0.174 0.826 32 H 0.172 0.828 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.602 -26.239 0.042 27.941 hybrid contribution -0.325 1.289 -0.041 1.330 sum -9.927 -24.950 0.000 26.853 Atomic orbital electron populations 1.20442 0.87089 1.02696 1.02660 1.21785 1.00313 0.91918 1.15092 1.18228 0.85517 0.90070 0.77321 1.90715 1.69747 1.35335 1.52236 1.69747 1.12172 1.24878 1.31036 1.25680 1.01855 0.82639 0.89286 1.82115 0.86487 1.10360 1.83597 1.22861 0.97769 0.90630 1.60036 0.90619 1.25935 1.01225 0.97233 0.91847 1.69995 1.23739 1.14503 1.45952 0.85968 0.78849 0.80523 0.81354 1.17146 1.17909 1.12948 1.42599 1.05517 1.08890 1.63411 0.71985 1.19347 0.81452 0.94648 0.92433 1.18398 0.98621 0.89931 1.01872 1.21490 0.93568 0.98684 0.97066 1.21437 1.00423 0.92161 0.99786 1.21781 0.95758 0.99929 0.93833 1.21429 0.95813 0.96792 0.99609 1.21460 1.00310 0.92678 0.97409 0.90289 0.93296 0.88989 0.90697 0.85158 0.82909 0.82640 0.82763 0.84683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.11 8.17 71.24 0.58 -1.53 16 2 C -0.28 -10.42 5.88 -19.48 -0.11 -10.53 16 3 C 0.50 25.63 7.70 85.14 0.66 26.28 16 4 O -0.59 -35.51 17.15 -5.99 -0.10 -35.61 16 5 N -0.63 -33.79 8.50 -319.10 -2.71 -36.50 16 6 C 0.38 15.89 7.95 179.56 1.43 17.31 16 7 S 0.14 5.77 19.74 -56.49 -1.12 4.65 16 8 C -0.56 -32.66 9.79 67.97 0.67 -31.99 16 9 H 0.08 5.25 6.75 -2.91 -0.02 5.23 16 10 C 0.04 2.50 5.50 84.89 0.47 2.97 16 11 N -0.91 -55.05 13.96 21.65 0.30 -54.74 16 12 Si 0.92 37.45 27.74 68.60 1.90 39.35 16 13 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 14 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 15 H -0.21 -7.28 6.74 99.48 0.67 -6.61 16 16 N -0.58 -17.31 5.33 -183.48 -0.98 -18.29 16 17 H 0.44 8.91 8.52 -92.71 -0.79 8.12 16 18 C 0.23 6.73 6.39 40.41 0.26 6.99 16 19 C -0.09 -1.71 5.00 -20.09 -0.10 -1.81 16 20 C -0.09 -1.47 7.78 22.53 0.18 -1.29 16 21 C -0.12 -1.29 10.03 22.23 0.22 -1.07 16 22 C -0.10 -0.80 10.04 22.33 0.22 -0.58 16 23 C -0.12 -1.16 10.03 22.23 0.22 -0.94 16 24 C -0.10 -1.45 9.52 22.53 0.21 -1.24 16 25 H 0.08 2.04 7.30 -2.39 -0.02 2.02 16 26 H 0.05 1.67 7.65 -2.39 -0.02 1.65 16 27 H 0.09 2.10 6.30 -2.39 -0.02 2.09 16 28 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 29 H 0.13 2.21 6.34 -2.91 -0.02 2.19 16 30 H 0.15 0.90 8.06 -2.91 -0.02 0.88 16 31 H 0.16 0.42 8.06 -2.91 -0.02 0.40 16 32 H 0.15 0.72 8.06 -2.92 -0.02 0.69 16 33 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 Total: -1.00 -86.32 300.57 2.54 -83.78 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: 0.34 Total: 14.78 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: 4.90 Total: 2.58 kcal Atomic # 7 Polarization: -106.14 SS G_CDS: -3.39 Total: -109.53 kcal Atomic # 8 Polarization: -35.51 SS G_CDS: -0.10 Total: -35.61 kcal Atomic # 14 Polarization: 37.45 SS G_CDS: 1.90 Total: 39.35 kcal Atomic # 16 Polarization: 5.77 SS G_CDS: -1.12 Total: 4.65 kcal Total: -86.32 2.54 -83.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132805636.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.915 kcal (2) G-P(sol) polarization free energy of solvation -86.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds