Wall clock time and date at job start Tue Mar 31 2020 05:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31293 * 1 3 3 Si 1.86803 * 120.00350 * 2 1 4 4 H 1.48495 * 109.47215 * 270.00491 * 3 2 1 5 5 H 1.48502 * 109.46830 * 30.00132 * 3 2 1 6 6 H 1.48501 * 109.46883 * 149.99956 * 3 2 1 7 7 C 1.38979 * 119.99742 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00047 * 179.97438 * 7 2 1 9 9 N 1.37317 * 120.00298 * 359.72220 * 7 2 1 10 10 C 1.36510 * 126.07601 * 180.27419 * 9 7 2 11 11 C 1.35671 * 107.51169 * 179.97438 * 10 9 7 12 12 N 1.40592 * 126.08306 * 180.02562 * 11 10 9 13 13 C 1.34771 * 120.00281 * 141.38782 * 12 11 10 14 14 S 1.71199 * 119.99989 * 3.76403 * 13 12 11 15 15 N 1.34778 * 120.00208 * 183.76959 * 13 12 11 16 16 C 1.39882 * 120.00239 * 185.63981 * 15 13 12 17 17 C 1.38882 * 120.07230 * 220.24262 * 16 15 13 18 18 C 1.38108 * 119.92405 * 179.81328 * 17 16 15 19 19 C 1.38292 * 120.07341 * 0.44740 * 18 17 16 20 20 C 1.38278 * 120.13930 * 359.78496 * 19 18 17 21 21 C 1.38101 * 120.07567 * 0.02562 * 20 19 18 22 22 C 1.40653 * 107.83286 * 359.97438 * 11 10 9 23 23 N 1.30912 * 108.39525 * 359.74359 * 22 11 10 24 24 H 0.97008 * 120.00081 * 359.97438 * 1 2 3 25 25 H 1.08006 * 126.24166 * 359.97438 * 10 9 7 26 26 H 0.96998 * 119.99651 * 321.37756 * 12 11 10 27 27 H 0.97003 * 119.99837 * 5.64917 * 15 13 12 28 28 H 1.07997 * 120.03987 * 0.03041 * 17 16 15 29 29 H 1.07999 * 119.96363 * 180.20855 * 18 17 16 30 30 H 1.08000 * 119.92585 * 179.76476 * 19 18 17 31 31 H 1.08003 * 119.96087 * 179.97438 * 20 19 18 32 32 H 1.07998 * 120.03717 * 179.97438 * 21 20 19 33 33 H 1.08006 * 125.79984 * 179.97438 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 2.4945 2.0464 -1.4000 5 1 1.4445 2.6526 0.7001 6 1 3.5446 1.4400 0.7001 7 6 2.0078 -1.2036 -0.0005 8 1 3.0878 -1.2037 -0.0010 9 7 1.3212 -2.3928 0.0047 10 6 1.8748 -3.6406 0.0101 11 6 0.8577 -4.5385 0.0147 12 7 0.9889 -5.9382 0.0215 13 6 0.1439 -6.6907 0.7537 14 16 -1.1483 -5.9508 1.5985 15 7 0.3161 -8.0258 0.8209 16 6 -0.6264 -8.8202 1.4821 17 6 -0.2085 -9.8797 2.2770 18 6 -1.1416 -10.6597 2.9316 19 6 -2.4909 -10.3925 2.7888 20 6 -2.9102 -9.3414 1.9942 21 6 -1.9823 -8.5551 1.3401 22 6 -0.3513 -3.8197 0.0126 23 7 -0.0717 -2.5408 0.0125 24 1 -0.4851 0.8401 0.0004 25 1 2.9300 -3.8710 0.0107 26 1 1.6875 -6.3624 -0.5009 27 1 1.0938 -8.4357 0.4108 28 1 0.8449 -10.0912 2.3860 29 1 -0.8172 -11.4816 3.5525 30 1 -3.2186 -11.0064 3.2987 31 1 -3.9648 -9.1355 1.8844 32 1 -2.3105 -7.7346 0.7193 33 1 -1.3420 -4.2499 0.0147 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000145474839.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:18 Heat of formation + Delta-G solvation = 143.075911 kcal Electronic energy + Delta-G solvation = -19081.396503 eV Core-core repulsion = 16042.854353 eV Total energy + Delta-G solvation = -3038.542150 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.074 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.08686 -39.56125 -37.62262 -34.87804 -33.33797 -30.89784 -30.39563 -29.61630 -27.69139 -25.05297 -24.17914 -22.57030 -22.02446 -20.65772 -20.00217 -18.49262 -17.79168 -17.40856 -16.12600 -15.67361 -15.38719 -15.10332 -14.86938 -14.06529 -13.95014 -13.74586 -13.35537 -13.18196 -13.04809 -12.56873 -11.77646 -11.65876 -11.54100 -11.28624 -11.12295 -10.99454 -10.66585 -10.57968 -10.27971 -9.43340 -8.94130 -8.88402 -8.45877 -8.20226 -7.41033 -6.90615 -6.63714 -6.36018 -4.31688 1.12441 1.52027 1.88076 2.35615 2.89146 2.93947 3.02690 3.07213 3.48469 3.68557 3.86852 3.91938 4.28289 4.74757 4.91973 4.95022 5.00903 5.20189 5.44817 5.55042 5.69583 6.02064 6.13107 6.23343 6.28839 6.41249 6.53642 6.62773 6.70056 6.85175 6.99741 7.11230 7.19180 7.37060 7.71523 7.77696 8.16372 8.60050 9.25712 9.56232 10.31472 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.048177 B = 0.003327 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.050190 B = 8414.650368 C = 8751.632981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.762 5.762 2 C 0.048 3.952 3 Si 0.936 3.064 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.322 4.322 8 H 0.118 0.882 9 N -0.137 5.137 10 C -0.062 4.062 11 C -0.096 4.096 12 N -0.556 5.556 13 C 0.536 3.464 14 S -0.617 6.617 15 N -0.648 5.648 16 C 0.145 3.855 17 C -0.134 4.134 18 C -0.119 4.119 19 C -0.125 4.125 20 C -0.114 4.114 21 C -0.074 4.074 22 C 0.032 3.968 23 N -0.264 5.264 24 H 0.277 0.723 25 H 0.145 0.855 26 H 0.394 0.606 27 H 0.401 0.599 28 H 0.119 0.881 29 H 0.121 0.879 30 H 0.119 0.881 31 H 0.124 0.876 32 H 0.146 0.854 33 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.081 -16.707 -0.012 16.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C -0.171 4.171 3 Si 0.760 3.240 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.188 1.188 7 C -0.455 4.455 8 H 0.135 0.865 9 N 0.100 4.900 10 C -0.216 4.216 11 C -0.203 4.203 12 N -0.173 5.173 13 C 0.179 3.821 14 S -0.485 6.485 15 N -0.275 5.275 16 C 0.051 3.949 17 C -0.156 4.156 18 C -0.138 4.138 19 C -0.144 4.144 20 C -0.134 4.134 21 C -0.096 4.096 22 C -0.148 4.148 23 N -0.092 5.092 24 H 0.088 0.912 25 H 0.163 0.837 26 H 0.229 0.771 27 H 0.238 0.762 28 H 0.137 0.863 29 H 0.139 0.861 30 H 0.137 0.863 31 H 0.142 0.858 32 H 0.164 0.836 33 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 0.530 -14.581 0.543 14.601 hybrid contribution 2.356 -0.938 -0.685 2.627 sum 2.886 -15.519 -0.142 15.786 Atomic orbital electron populations 1.70211 1.06154 1.28291 1.34076 1.25671 0.95740 1.00378 0.95292 0.85804 0.79439 0.79787 0.79013 1.19505 1.19940 1.18753 1.19924 0.91739 0.80482 1.53336 0.86494 1.44642 1.04374 1.03237 1.37786 1.21303 0.96780 0.85449 1.18050 1.16867 0.94710 0.78523 1.30156 1.41474 1.29675 1.06006 1.40104 1.22350 0.92049 0.83263 0.84468 1.93206 1.25931 1.73944 1.55427 1.42063 1.25697 1.03655 1.56132 1.17381 0.88546 0.92513 0.96486 1.20804 0.99703 0.97398 0.97666 1.20785 0.92953 0.99969 1.00121 1.21122 0.95725 0.98067 0.99483 1.20968 0.99501 0.94997 0.97937 1.21485 0.91026 0.97613 0.99509 1.24168 0.98089 0.90533 1.01978 1.78387 0.89670 1.14757 1.26357 0.91218 0.83735 0.77055 0.76232 0.86270 0.86102 0.86335 0.85814 0.83628 0.80567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -20.88 11.81 55.49 0.66 -20.23 16 2 C 0.05 1.20 5.50 -17.51 -0.10 1.11 16 3 Si 0.94 18.53 29.55 -169.99 -5.02 13.51 16 4 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 5 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 6 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 7 C -0.32 -8.32 10.25 -14.82 -0.15 -8.47 16 8 H 0.12 2.68 7.83 -52.48 -0.41 2.27 16 9 N -0.14 -3.65 3.74 -11.41 -0.04 -3.69 16 10 C -0.06 -1.40 11.49 -16.39 -0.19 -1.59 16 11 C -0.10 -2.09 6.39 -83.84 -0.54 -2.63 16 12 N -0.56 -9.23 5.47 -11.54 -0.06 -9.29 16 13 C 0.54 9.12 7.70 -86.92 -0.67 8.45 16 14 S -0.62 -13.40 22.12 -107.50 -2.38 -15.78 16 15 N -0.65 -8.23 5.33 -11.40 -0.06 -8.29 16 16 C 0.14 1.93 5.95 -83.71 -0.50 1.43 16 17 C -0.13 -1.50 9.97 -39.39 -0.39 -1.89 16 18 C -0.12 -1.22 10.04 -39.61 -0.40 -1.62 16 19 C -0.13 -1.32 10.04 -39.55 -0.40 -1.72 16 20 C -0.11 -1.39 10.04 -39.62 -0.40 -1.79 16 21 C -0.07 -1.06 7.85 -39.39 -0.31 -1.37 16 22 C 0.03 0.81 10.03 -17.03 -0.17 0.63 16 23 N -0.26 -7.46 10.40 30.80 0.32 -7.14 16 24 H 0.28 6.95 8.31 -40.82 -0.34 6.61 16 25 H 0.15 2.74 8.06 -52.48 -0.42 2.32 16 26 H 0.39 4.80 8.85 -40.82 -0.36 4.44 16 27 H 0.40 3.51 8.85 -40.82 -0.36 3.14 16 28 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 29 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 30 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 31 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 32 H 0.15 2.37 6.13 -46.47 -0.28 2.09 16 33 H 0.18 4.40 6.27 -49.14 -0.31 4.09 16 LS Contribution 301.53 15.07 4.54 4.54 Total: -1.00 -33.50 301.53 -9.23 -42.73 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -2.98 Total: 13.08 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: -4.20 Total: -9.46 kcal Atomic # 7 Polarization: -49.44 SS G_CDS: 0.81 Total: -48.63 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.02 Total: 13.51 kcal Atomic # 16 Polarization: -13.40 SS G_CDS: -2.38 Total: -15.78 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -33.50 -9.23 -42.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000145474839.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.808 kcal (2) G-P(sol) polarization free energy of solvation -33.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds