Wall clock time and date at job start Tue Mar 31 2020 05:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31293 * 1 3 3 Si 1.86803 * 120.00350 * 2 1 4 4 H 1.48495 * 109.47215 * 270.00491 * 3 2 1 5 5 H 1.48502 * 109.46830 * 30.00132 * 3 2 1 6 6 H 1.48501 * 109.46883 * 149.99956 * 3 2 1 7 7 C 1.38979 * 119.99742 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00047 * 179.97438 * 7 2 1 9 9 N 1.37317 * 120.00298 * 359.72220 * 7 2 1 10 10 C 1.36510 * 126.07601 * 180.27419 * 9 7 2 11 11 C 1.35671 * 107.51169 * 179.97438 * 10 9 7 12 12 N 1.40592 * 126.08306 * 180.02562 * 11 10 9 13 13 C 1.34771 * 120.00281 * 141.38782 * 12 11 10 14 14 S 1.71199 * 119.99989 * 3.76403 * 13 12 11 15 15 N 1.34778 * 120.00208 * 183.76959 * 13 12 11 16 16 C 1.39882 * 120.00239 * 185.63981 * 15 13 12 17 17 C 1.38882 * 120.07230 * 220.24262 * 16 15 13 18 18 C 1.38108 * 119.92405 * 179.81328 * 17 16 15 19 19 C 1.38292 * 120.07341 * 0.44740 * 18 17 16 20 20 C 1.38278 * 120.13930 * 359.78496 * 19 18 17 21 21 C 1.38101 * 120.07567 * 0.02562 * 20 19 18 22 22 C 1.40653 * 107.83286 * 359.97438 * 11 10 9 23 23 N 1.30912 * 108.39525 * 359.74359 * 22 11 10 24 24 H 0.97008 * 120.00081 * 359.97438 * 1 2 3 25 25 H 1.08006 * 126.24166 * 359.97438 * 10 9 7 26 26 H 0.96998 * 119.99651 * 321.37756 * 12 11 10 27 27 H 0.97003 * 119.99837 * 5.64917 * 15 13 12 28 28 H 1.07997 * 120.03987 * 0.03041 * 17 16 15 29 29 H 1.07999 * 119.96363 * 180.20855 * 18 17 16 30 30 H 1.08000 * 119.92585 * 179.76476 * 19 18 17 31 31 H 1.08003 * 119.96087 * 179.97438 * 20 19 18 32 32 H 1.07998 * 120.03717 * 179.97438 * 21 20 19 33 33 H 1.08006 * 125.79984 * 179.97438 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 2.4945 2.0464 -1.4000 5 1 1.4445 2.6526 0.7001 6 1 3.5446 1.4400 0.7001 7 6 2.0078 -1.2036 -0.0005 8 1 3.0878 -1.2037 -0.0010 9 7 1.3212 -2.3928 0.0047 10 6 1.8748 -3.6406 0.0101 11 6 0.8577 -4.5385 0.0147 12 7 0.9889 -5.9382 0.0215 13 6 0.1439 -6.6907 0.7537 14 16 -1.1483 -5.9508 1.5985 15 7 0.3161 -8.0258 0.8209 16 6 -0.6264 -8.8202 1.4821 17 6 -0.2085 -9.8797 2.2770 18 6 -1.1416 -10.6597 2.9316 19 6 -2.4909 -10.3925 2.7888 20 6 -2.9102 -9.3414 1.9942 21 6 -1.9823 -8.5551 1.3401 22 6 -0.3513 -3.8197 0.0126 23 7 -0.0717 -2.5408 0.0125 24 1 -0.4851 0.8401 0.0004 25 1 2.9300 -3.8710 0.0107 26 1 1.6875 -6.3624 -0.5009 27 1 1.0938 -8.4357 0.4108 28 1 0.8449 -10.0912 2.3860 29 1 -0.8172 -11.4816 3.5525 30 1 -3.2186 -11.0064 3.2987 31 1 -3.9648 -9.1355 1.8844 32 1 -2.3105 -7.7346 0.7193 33 1 -1.3420 -4.2499 0.0147 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000145474839.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:18 Heat of formation + Delta-G solvation = 121.637936 kcal Electronic energy + Delta-G solvation = -19082.326123 eV Core-core repulsion = 16042.854353 eV Total energy + Delta-G solvation = -3039.471770 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.074 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.69246 -40.88657 -38.90286 -36.25776 -35.09666 -32.29027 -31.81459 -30.85166 -29.30815 -26.86442 -25.58032 -23.57408 -23.26198 -22.34211 -21.67819 -20.01782 -19.15723 -18.87193 -17.51707 -17.14602 -16.85061 -16.47819 -16.11929 -15.61565 -15.40643 -14.97228 -14.82581 -14.65437 -14.22794 -13.78543 -13.50888 -13.24354 -12.86843 -12.83483 -12.44123 -12.23738 -12.10567 -12.09319 -11.59586 -11.15462 -10.76019 -10.16421 -9.84696 -9.69757 -8.93531 -8.64286 -8.47376 -7.99998 -6.25424 -0.08719 0.58482 0.69253 0.96084 1.29901 1.38904 1.49612 1.58773 1.78313 2.13097 2.40758 2.53546 2.95772 2.98589 3.08776 4.05563 4.17018 4.37576 4.39376 4.43353 4.61333 4.63902 4.71940 4.88976 4.99376 5.17201 5.27552 5.30942 5.38782 5.57567 5.64733 5.74492 5.92572 5.97381 6.20138 6.33224 6.45905 6.75553 7.41987 7.65474 8.51025 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.048177 B = 0.003327 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.050190 B = 8414.650368 C = 8751.632981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C -0.004 4.004 3 Si 1.018 2.982 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.245 1.245 7 C -0.354 4.354 8 H 0.142 0.858 9 N -0.166 5.166 10 C -0.052 4.052 11 C -0.078 4.078 12 N -0.545 5.545 13 C 0.568 3.432 14 S -0.713 6.713 15 N -0.614 5.614 16 C 0.114 3.886 17 C -0.126 4.126 18 C -0.117 4.117 19 C -0.120 4.120 20 C -0.128 4.128 21 C -0.096 4.096 22 C 0.014 3.986 23 N -0.315 5.315 24 H 0.277 0.723 25 H 0.187 0.813 26 H 0.422 0.578 27 H 0.426 0.574 28 H 0.148 0.852 29 H 0.156 0.844 30 H 0.147 0.853 31 H 0.130 0.870 32 H 0.116 0.884 33 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.916 -19.465 0.502 20.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.217 4.217 3 Si 0.837 3.163 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.169 1.169 7 C -0.485 4.485 8 H 0.159 0.841 9 N 0.069 4.931 10 C -0.206 4.206 11 C -0.185 4.185 12 N -0.165 5.165 13 C 0.206 3.794 14 S -0.583 6.583 15 N -0.242 5.242 16 C 0.021 3.979 17 C -0.147 4.147 18 C -0.136 4.136 19 C -0.138 4.138 20 C -0.148 4.148 21 C -0.119 4.119 22 C -0.165 4.165 23 N -0.143 5.143 24 H 0.087 0.913 25 H 0.204 0.796 26 H 0.262 0.738 27 H 0.268 0.732 28 H 0.166 0.834 29 H 0.173 0.827 30 H 0.165 0.835 31 H 0.148 0.852 32 H 0.134 0.866 33 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 3.413 -17.455 1.035 17.816 hybrid contribution 1.429 -0.495 -0.804 1.713 sum 4.843 -17.950 0.231 18.593 Atomic orbital electron populations 1.70395 1.08389 1.29174 1.36734 1.26864 0.96448 1.04310 0.94044 0.84609 0.78253 0.74153 0.79305 1.18638 1.20402 1.16857 1.20621 0.92972 0.80838 1.54091 0.84098 1.44887 1.03885 1.04681 1.39679 1.22043 0.98746 0.84317 1.15455 1.16778 0.93171 0.80709 1.27841 1.41061 1.30565 1.04084 1.40812 1.21719 0.89937 0.84486 0.83302 1.93501 1.30146 1.75868 1.58814 1.41869 1.26076 1.01759 1.54450 1.17615 0.88114 0.93765 0.98379 1.21142 1.01519 0.95868 0.96153 1.21263 0.92516 1.00286 0.99533 1.21508 0.96940 0.97162 0.98194 1.21171 0.99734 0.95594 0.98252 1.21375 0.92388 0.97750 1.00350 1.24188 0.99029 0.90586 1.02747 1.78280 0.91650 1.16432 1.27982 0.91343 0.79562 0.73758 0.73221 0.83418 0.82659 0.83495 0.85168 0.86626 0.81448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -47.11 11.81 21.66 0.26 -46.86 16 2 C 0.00 -0.22 5.50 84.95 0.47 0.24 16 3 Si 1.02 38.27 29.55 68.60 2.03 40.30 16 4 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 5 H -0.28 -10.52 7.11 99.48 0.71 -9.81 16 6 H -0.25 -8.40 7.11 99.48 0.71 -7.69 16 7 C -0.35 -18.42 10.25 84.01 0.86 -17.56 16 8 H 0.14 6.31 7.83 -2.91 -0.02 6.29 16 9 N -0.17 -8.99 3.74 -190.01 -0.71 -9.70 16 10 C -0.05 -2.31 11.49 83.37 0.96 -1.36 16 11 C -0.08 -3.36 6.39 37.73 0.24 -3.12 16 12 N -0.54 -17.04 5.47 -190.42 -1.04 -18.08 16 13 C 0.57 18.72 7.70 179.06 1.38 20.09 16 14 S -0.71 -32.16 22.12 -56.49 -1.25 -33.41 16 15 N -0.61 -14.11 5.33 -189.99 -1.01 -15.12 16 16 C 0.11 2.84 5.95 38.17 0.23 3.06 16 17 C -0.13 -2.34 9.97 22.39 0.22 -2.12 16 18 C -0.12 -1.92 10.04 22.25 0.22 -1.69 16 19 C -0.12 -2.18 10.04 22.29 0.22 -1.96 16 20 C -0.13 -3.04 10.04 22.25 0.22 -2.81 16 21 C -0.10 -2.78 7.85 22.39 0.18 -2.60 16 22 C 0.01 0.74 10.03 85.42 0.86 1.60 16 23 N -0.31 -18.64 10.40 -56.46 -0.59 -19.23 16 24 H 0.28 14.68 8.31 -92.70 -0.77 13.91 16 25 H 0.19 6.43 8.06 -2.91 -0.02 6.41 16 26 H 0.42 8.77 8.85 -92.71 -0.82 7.95 16 27 H 0.43 5.74 8.85 -92.71 -0.82 4.92 16 28 H 0.15 1.88 8.06 -2.91 -0.02 1.85 16 29 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 30 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 31 H 0.13 2.77 8.06 -2.91 -0.02 2.75 16 32 H 0.12 4.03 6.13 -6.74 -0.04 3.98 16 33 H 0.17 8.96 6.27 -5.04 -0.03 8.92 16 Total: -1.00 -79.47 301.53 3.24 -76.23 By element: Atomic # 1 Polarization: 34.61 SS G_CDS: -0.50 Total: 34.10 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: 6.06 Total: -8.23 kcal Atomic # 7 Polarization: -105.90 SS G_CDS: -3.10 Total: -108.99 kcal Atomic # 14 Polarization: 38.27 SS G_CDS: 2.03 Total: 40.30 kcal Atomic # 16 Polarization: -32.16 SS G_CDS: -1.25 Total: -33.41 kcal Total: -79.47 3.24 -76.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000145474839.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.869 kcal (2) G-P(sol) polarization free energy of solvation -79.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds