Wall clock time and date at job start Tue Mar 31 2020 05:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00295 * 2 1 4 4 H 1.48496 * 109.47104 * 239.99897 * 3 2 1 5 5 H 1.48497 * 109.47130 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46962 * 120.00354 * 3 2 1 7 7 C 1.38816 * 119.99695 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00189 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99998 * 359.97438 * 7 2 1 10 10 C 1.46497 * 119.99640 * 180.02562 * 9 7 2 11 11 H 1.08992 * 109.47620 * 34.99910 * 10 9 7 12 12 C 1.50699 * 109.47011 * 155.00632 * 10 9 7 13 13 C 1.38270 * 119.99517 * 219.99996 * 12 10 9 14 14 C 1.38217 * 120.03168 * 179.97438 * 13 12 10 15 15 C 1.38236 * 120.00739 * 359.97438 * 14 13 12 16 16 C 1.38330 * 119.99109 * 0.02562 * 15 14 13 17 17 Cl 1.73603 * 120.01339 * 179.97438 * 16 15 14 18 18 C 1.38194 * 119.99877 * 39.71886 * 12 10 9 19 19 C 1.50707 * 109.46841 * 274.99785 * 10 9 7 20 20 C 1.38223 * 119.61967 * 5.00854 * 19 10 9 21 21 C 1.38625 * 119.15978 * 180.27814 * 20 19 10 22 22 C 1.38677 * 118.42126 * 359.46985 * 21 20 19 23 23 C 1.38182 * 119.16110 * 0.48634 * 22 21 20 24 24 N 1.31856 * 119.61465 * 184.97925 * 19 10 9 25 25 H 0.96998 * 119.99728 * 359.97438 * 1 2 3 26 26 H 0.96993 * 119.99677 * 0.02562 * 9 7 2 27 27 H 1.08004 * 119.98236 * 0.02562 * 13 12 10 28 28 H 1.07992 * 119.99468 * 180.02562 * 14 13 12 29 29 H 1.08005 * 120.00328 * 180.02562 * 15 14 13 30 30 H 1.08000 * 119.99747 * 0.02562 * 18 12 10 31 31 H 1.08002 * 120.41617 * 359.97438 * 20 19 10 32 32 H 1.08003 * 120.79223 * 179.72202 * 21 20 19 33 33 H 1.08006 * 120.41702 * 180.22168 * 22 21 20 34 34 H 1.07998 * 119.61686 * 179.76233 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 1 2.9686 -3.5506 0.5888 12 6 1.1939 -4.7357 0.5998 13 6 1.7516 -5.6784 1.4436 14 6 0.9597 -6.6679 1.9951 15 6 -0.3907 -6.7153 1.7035 16 6 -0.9494 -5.7725 0.8594 17 17 -2.6451 -5.8318 0.4924 18 6 -0.1570 -4.7793 0.3115 19 6 2.4163 -4.0299 -1.4160 20 6 2.1350 -3.1520 -2.4460 21 6 2.4635 -3.5074 -3.7450 22 6 3.0754 -4.7332 -3.9593 23 6 3.3264 -5.5584 -2.8797 24 7 2.9950 -5.1898 -1.6575 25 1 -0.4849 0.8400 0.0004 26 1 0.3555 -2.3880 -0.0005 27 1 2.8065 -5.6410 1.6726 28 1 1.3959 -7.4037 2.6544 29 1 -1.0095 -7.4883 2.1348 30 1 -0.5933 -4.0405 -0.3443 31 1 1.6609 -2.2034 -2.2417 32 1 2.2516 -2.8435 -4.5702 33 1 3.3484 -5.0410 -4.9580 34 1 3.7991 -6.5163 -3.0386 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152385609.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:49 Heat of formation + Delta-G solvation = 68.764726 kcal Electronic energy + Delta-G solvation = -19851.243877 eV Core-core repulsion = 16775.142895 eV Total energy + Delta-G solvation = -3076.100982 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.91874 -38.81387 -36.29055 -35.26948 -32.55635 -31.74956 -30.45815 -30.22002 -29.58384 -25.88952 -23.54422 -22.76741 -22.35083 -22.03397 -20.17893 -17.66069 -16.59392 -16.41801 -15.69945 -15.20759 -14.97757 -14.87195 -14.32552 -13.83175 -13.47256 -13.45468 -13.28877 -12.96199 -12.89247 -12.48595 -11.92529 -11.44104 -11.28235 -11.02394 -11.00008 -10.92098 -10.87430 -10.54529 -10.24342 -9.86380 -9.32923 -9.28396 -8.86073 -8.54766 -8.38528 -8.31083 -7.22388 -5.92749 -3.25540 1.47565 1.58673 1.70172 1.83109 2.40599 3.35911 3.41646 3.41892 3.96280 4.31782 4.45106 4.79515 5.04888 5.11953 5.24533 5.34710 5.40340 5.47987 5.52273 5.62145 5.70353 5.78377 5.92425 6.03918 6.13764 6.18257 6.33277 6.43850 6.54296 6.61109 6.73789 6.84989 6.99981 7.11428 7.32994 7.57874 8.22797 8.55112 9.35980 9.85122 10.21948 11.28076 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.011462 B = 0.006591 C = 0.005030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.199134 B = 4247.514258 C = 5565.621220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.002 4.002 3 Si 0.908 3.092 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.254 4.254 8 H 0.074 0.926 9 N -0.711 5.711 10 C 0.259 3.741 11 H 0.081 0.919 12 C -0.042 4.042 13 C -0.095 4.095 14 C -0.113 4.113 15 C -0.123 4.123 16 C -0.034 4.034 17 Cl -0.083 7.083 18 C -0.095 4.095 19 C 0.115 3.885 20 C -0.134 4.134 21 C -0.091 4.091 22 C -0.189 4.189 23 C 0.081 3.919 24 N -0.483 5.483 25 H 0.259 0.741 26 H 0.390 0.610 27 H 0.127 0.873 28 H 0.126 0.874 29 H 0.125 0.875 30 H 0.134 0.866 31 H 0.161 0.839 32 H 0.125 0.875 33 H 0.122 0.878 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.817 -12.521 -1.911 12.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.199 4.199 3 Si 0.738 3.262 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.384 4.384 8 H 0.092 0.908 9 N -0.352 5.352 10 C 0.146 3.854 11 H 0.098 0.902 12 C -0.044 4.044 13 C -0.114 4.114 14 C -0.131 4.131 15 C -0.142 4.142 16 C -0.060 4.060 17 Cl -0.054 7.054 18 C -0.114 4.114 19 C -0.025 4.025 20 C -0.153 4.153 21 C -0.117 4.117 22 C -0.209 4.209 23 C -0.076 4.076 24 N -0.193 5.193 25 H 0.069 0.931 26 H 0.226 0.774 27 H 0.145 0.855 28 H 0.144 0.856 29 H 0.143 0.857 30 H 0.152 0.848 31 H 0.179 0.821 32 H 0.143 0.857 33 H 0.140 0.860 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.918 -12.877 -1.226 13.076 hybrid contribution -0.169 1.497 -0.975 1.795 sum 1.749 -11.380 -2.202 11.722 Atomic orbital electron populations 1.69652 1.05112 1.26281 1.55961 1.24766 0.95486 0.97759 1.01937 0.86273 0.78619 0.83270 0.78047 1.21061 1.21574 1.21030 1.19167 0.91154 0.83543 1.44569 0.90838 1.42546 1.06040 0.99079 1.87558 1.17920 0.94182 0.84685 0.88585 0.90160 1.19946 0.93116 0.95721 0.95599 1.21062 1.00058 0.94063 0.96229 1.20977 0.92941 0.98879 1.00292 1.20903 0.95624 0.98841 0.98868 1.20832 0.84760 0.98925 1.01484 1.98345 1.14921 1.98208 1.93913 1.20924 0.93313 0.97163 1.00014 1.22788 0.92494 0.88717 0.98541 1.22447 0.98580 1.02516 0.91791 1.21628 0.96541 0.95965 0.97547 1.21984 1.02635 0.96249 1.00049 1.22543 0.97754 0.99083 0.88258 1.67452 1.11195 1.17397 1.23268 0.93078 0.77438 0.85516 0.85566 0.85671 0.84830 0.82113 0.85699 0.86001 0.83889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.05 13.06 55.49 0.72 -25.32 16 2 C 0.00 -0.05 5.50 -17.43 -0.10 -0.15 16 3 Si 0.91 21.21 29.55 -169.99 -5.02 16.18 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.25 -6.47 8.56 -15.06 -0.13 -6.60 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.71 -16.50 4.01 -55.69 -0.22 -16.73 16 10 C 0.26 5.13 2.97 -70.23 -0.21 4.92 16 11 H 0.08 1.61 7.94 -51.93 -0.41 1.20 16 12 C -0.04 -0.76 4.74 -104.63 -0.50 -1.25 16 13 C -0.10 -1.47 9.67 -39.58 -0.38 -1.85 16 14 C -0.11 -1.51 10.05 -39.59 -0.40 -1.91 16 15 C -0.12 -1.73 9.83 -39.55 -0.39 -2.12 16 16 C -0.03 -0.54 6.32 -39.50 -0.25 -0.79 16 17 Cl -0.08 -1.24 28.96 -51.86 -1.50 -2.75 16 18 C -0.10 -1.72 8.84 -39.55 -0.35 -2.07 16 19 C 0.12 2.22 6.16 -82.58 -0.51 1.71 16 20 C -0.13 -2.58 9.14 -39.44 -0.36 -2.94 16 21 C -0.09 -1.47 10.18 -39.28 -0.40 -1.86 16 22 C -0.19 -2.71 10.11 -39.44 -0.40 -3.11 16 23 C 0.08 1.23 11.18 -17.55 -0.20 1.04 16 24 N -0.48 -8.61 10.01 -9.47 -0.09 -8.70 16 25 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 26 H 0.39 9.62 6.05 -40.82 -0.25 9.37 16 27 H 0.13 1.76 8.04 -52.48 -0.42 1.33 16 28 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 29 H 0.13 1.46 8.06 -52.48 -0.42 1.03 16 30 H 0.13 2.60 6.90 -52.49 -0.36 2.23 16 31 H 0.16 3.52 6.09 -52.49 -0.32 3.20 16 32 H 0.13 1.73 8.06 -52.48 -0.42 1.30 16 33 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 34 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 311.59 15.07 4.70 4.70 Total: -1.00 -28.00 311.59 -9.41 -37.41 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -3.42 Total: 12.21 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: -4.56 Total: -17.00 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: 0.41 Total: -50.75 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 17 Polarization: -1.24 SS G_CDS: -1.50 Total: -2.75 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.00 -9.41 -37.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152385609.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.175 kcal (2) G-P(sol) polarization free energy of solvation -28.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds