Wall clock time and date at job start Tue Mar 31 2020 05:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00295 * 2 1 4 4 H 1.48496 * 109.47104 * 239.99897 * 3 2 1 5 5 H 1.48497 * 109.47130 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46962 * 120.00354 * 3 2 1 7 7 C 1.38816 * 119.99695 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00189 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99998 * 359.97438 * 7 2 1 10 10 C 1.46497 * 119.99640 * 180.02562 * 9 7 2 11 11 H 1.08992 * 109.47620 * 34.99910 * 10 9 7 12 12 C 1.50699 * 109.47011 * 155.00632 * 10 9 7 13 13 C 1.38270 * 119.99517 * 219.99996 * 12 10 9 14 14 C 1.38217 * 120.03168 * 179.97438 * 13 12 10 15 15 C 1.38236 * 120.00739 * 359.97438 * 14 13 12 16 16 C 1.38330 * 119.99109 * 0.02562 * 15 14 13 17 17 Cl 1.73603 * 120.01339 * 179.97438 * 16 15 14 18 18 C 1.38194 * 119.99877 * 39.71886 * 12 10 9 19 19 C 1.50707 * 109.46841 * 274.99785 * 10 9 7 20 20 C 1.38223 * 119.61967 * 5.00854 * 19 10 9 21 21 C 1.38625 * 119.15978 * 180.27814 * 20 19 10 22 22 C 1.38677 * 118.42126 * 359.46985 * 21 20 19 23 23 C 1.38182 * 119.16110 * 0.48634 * 22 21 20 24 24 N 1.31856 * 119.61465 * 184.97925 * 19 10 9 25 25 H 0.96998 * 119.99728 * 359.97438 * 1 2 3 26 26 H 0.96993 * 119.99677 * 0.02562 * 9 7 2 27 27 H 1.08004 * 119.98236 * 0.02562 * 13 12 10 28 28 H 1.07992 * 119.99468 * 180.02562 * 14 13 12 29 29 H 1.08005 * 120.00328 * 180.02562 * 15 14 13 30 30 H 1.08000 * 119.99747 * 0.02562 * 18 12 10 31 31 H 1.08002 * 120.41617 * 359.97438 * 20 19 10 32 32 H 1.08003 * 120.79223 * 179.72202 * 21 20 19 33 33 H 1.08006 * 120.41702 * 180.22168 * 22 21 20 34 34 H 1.07998 * 119.61686 * 179.76233 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 1 2.9686 -3.5506 0.5888 12 6 1.1939 -4.7357 0.5998 13 6 1.7516 -5.6784 1.4436 14 6 0.9597 -6.6679 1.9951 15 6 -0.3907 -6.7153 1.7035 16 6 -0.9494 -5.7725 0.8594 17 17 -2.6451 -5.8318 0.4924 18 6 -0.1570 -4.7793 0.3115 19 6 2.4163 -4.0299 -1.4160 20 6 2.1350 -3.1520 -2.4460 21 6 2.4635 -3.5074 -3.7450 22 6 3.0754 -4.7332 -3.9593 23 6 3.3264 -5.5584 -2.8797 24 7 2.9950 -5.1898 -1.6575 25 1 -0.4849 0.8400 0.0004 26 1 0.3555 -2.3880 -0.0005 27 1 2.8065 -5.6410 1.6726 28 1 1.3959 -7.4037 2.6544 29 1 -1.0095 -7.4883 2.1348 30 1 -0.5933 -4.0405 -0.3443 31 1 1.6609 -2.2034 -2.2417 32 1 2.2516 -2.8435 -4.5702 33 1 3.3484 -5.0410 -4.9580 34 1 3.7991 -6.5163 -3.0386 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152385609.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:49 Heat of formation + Delta-G solvation = 54.116022 kcal Electronic energy + Delta-G solvation = -19851.879093 eV Core-core repulsion = 16775.142895 eV Total energy + Delta-G solvation = -3076.736198 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.26045 -40.05910 -37.57027 -36.82849 -34.23959 -33.17208 -31.69389 -31.49960 -31.23516 -27.46423 -25.29072 -24.10506 -23.60646 -23.33569 -21.56202 -19.46478 -17.94587 -17.78684 -17.06527 -16.53292 -16.46967 -16.22478 -15.85919 -15.38167 -14.96180 -14.80392 -14.67184 -14.37511 -14.22019 -13.77467 -13.35035 -13.05891 -12.81104 -12.60817 -12.45118 -12.31932 -12.19682 -12.12621 -11.88721 -11.67918 -11.12698 -10.64852 -10.27259 -9.83035 -9.69029 -9.55929 -9.13879 -7.96566 -5.28550 0.23225 0.33726 0.43462 0.51348 1.17966 1.47788 1.49126 1.55402 2.52260 2.73792 3.00904 3.29613 3.51917 3.77034 3.95538 4.03899 4.12705 4.15316 4.25413 4.38198 4.45030 4.49705 4.54380 4.66500 4.85275 4.88525 5.00695 5.11678 5.30906 5.40472 5.42408 5.47604 5.52172 5.68730 5.91739 5.98855 6.22501 7.20977 7.30615 7.96402 8.24535 9.25213 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.011462 B = 0.006591 C = 0.005030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.199134 B = 4247.514258 C = 5565.621220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.961 5.961 2 C -0.060 4.060 3 Si 0.967 3.033 4 H -0.278 1.278 5 H -0.296 1.296 6 H -0.279 1.279 7 C -0.242 4.242 8 H 0.074 0.926 9 N -0.719 5.719 10 C 0.259 3.741 11 H 0.072 0.928 12 C -0.060 4.060 13 C -0.100 4.100 14 C -0.098 4.098 15 C -0.116 4.116 16 C -0.044 4.044 17 Cl -0.079 7.079 18 C -0.117 4.117 19 C 0.101 3.899 20 C -0.164 4.164 21 C -0.092 4.092 22 C -0.174 4.174 23 C 0.080 3.920 24 N -0.494 5.494 25 H 0.252 0.748 26 H 0.379 0.621 27 H 0.141 0.859 28 H 0.169 0.831 29 H 0.156 0.844 30 H 0.105 0.895 31 H 0.124 0.876 32 H 0.145 0.855 33 H 0.166 0.834 34 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.388 -15.203 -2.222 15.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.610 5.610 2 C -0.253 4.253 3 Si 0.796 3.204 4 H -0.204 1.204 5 H -0.223 1.223 6 H -0.205 1.205 7 C -0.373 4.373 8 H 0.092 0.908 9 N -0.359 5.359 10 C 0.149 3.851 11 H 0.089 0.911 12 C -0.061 4.061 13 C -0.119 4.119 14 C -0.116 4.116 15 C -0.135 4.135 16 C -0.070 4.070 17 Cl -0.050 7.050 18 C -0.136 4.136 19 C -0.038 4.038 20 C -0.184 4.184 21 C -0.118 4.118 22 C -0.194 4.194 23 C -0.078 4.078 24 N -0.204 5.204 25 H 0.061 0.939 26 H 0.213 0.787 27 H 0.159 0.841 28 H 0.187 0.813 29 H 0.174 0.826 30 H 0.123 0.877 31 H 0.142 0.858 32 H 0.163 0.837 33 H 0.183 0.817 34 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 3.525 -15.591 -1.535 16.058 hybrid contribution -0.605 2.135 -0.954 2.416 sum 2.920 -13.456 -2.489 13.992 Atomic orbital electron populations 1.69805 1.06466 1.26257 1.58497 1.25448 0.96174 1.00627 1.03081 0.85321 0.77310 0.79590 0.78184 1.20402 1.22261 1.20526 1.19415 0.91226 0.84556 1.42095 0.90802 1.42582 1.05557 0.99944 1.87815 1.17936 0.93756 0.84035 0.89400 0.91083 1.19846 0.92845 0.96386 0.97071 1.21301 1.01137 0.93900 0.95549 1.21428 0.92376 0.98399 0.99359 1.21314 0.96334 0.98412 0.97435 1.20974 0.84952 0.99087 1.02015 1.98340 1.14487 1.98183 1.93983 1.20752 0.93918 0.97843 1.01072 1.22381 0.93943 0.89710 0.97770 1.22220 1.00726 1.01637 0.93851 1.21907 0.96012 0.97332 0.96593 1.22412 1.00394 0.94642 1.01930 1.23285 0.96562 1.00488 0.87466 1.67436 1.11534 1.16459 1.25018 0.93865 0.78724 0.84090 0.81326 0.82592 0.87713 0.85820 0.83684 0.81653 0.79977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.00 13.06 21.65 0.28 -56.71 16 2 C -0.06 -3.32 5.50 84.86 0.47 -2.85 16 3 Si 0.97 44.99 29.55 68.60 2.03 47.02 16 4 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 5 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 6 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 7 C -0.24 -12.89 8.56 84.03 0.72 -12.17 16 8 H 0.07 3.84 7.83 -2.91 -0.02 3.82 16 9 N -0.72 -35.43 4.01 -330.09 -1.32 -36.76 16 10 C 0.26 10.74 2.97 43.50 0.13 10.87 16 11 H 0.07 2.98 7.94 -2.39 -0.02 2.96 16 12 C -0.06 -2.20 4.74 -19.87 -0.09 -2.29 16 13 C -0.10 -2.95 9.67 22.27 0.22 -2.73 16 14 C -0.10 -2.30 10.05 22.26 0.22 -2.08 16 15 C -0.12 -2.96 9.83 22.29 0.22 -2.74 16 16 C -0.04 -1.40 6.32 22.32 0.14 -1.25 16 17 Cl -0.08 -2.36 28.96 -2.72 -0.08 -2.43 16 18 C -0.12 -4.38 8.84 22.29 0.20 -4.19 16 19 C 0.10 3.99 6.16 42.55 0.26 4.25 16 20 C -0.16 -6.57 9.14 22.36 0.20 -6.37 16 21 C -0.09 -2.89 10.18 22.47 0.23 -2.67 16 22 C -0.17 -4.42 10.11 22.36 0.23 -4.19 16 23 C 0.08 2.17 11.18 84.67 0.95 3.12 16 24 N -0.49 -17.04 10.01 -183.88 -1.84 -18.88 16 25 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 26 H 0.38 20.18 6.05 -92.71 -0.56 19.62 16 27 H 0.14 3.66 8.04 -2.91 -0.02 3.63 16 28 H 0.17 2.57 8.06 -2.91 -0.02 2.55 16 29 H 0.16 3.00 8.06 -2.91 -0.02 2.97 16 30 H 0.10 4.46 6.90 -2.91 -0.02 4.44 16 31 H 0.12 5.85 6.09 -2.91 -0.02 5.83 16 32 H 0.15 3.82 8.06 -2.91 -0.02 3.80 16 33 H 0.17 2.78 8.06 -2.91 -0.02 2.75 16 34 H 0.18 3.48 8.06 -2.91 -0.02 3.45 16 Total: -1.00 -64.05 311.59 3.72 -60.33 By element: Atomic # 1 Polarization: 32.17 SS G_CDS: 0.57 Total: 32.74 kcal Atomic # 6 Polarization: -29.38 SS G_CDS: 4.09 Total: -25.29 kcal Atomic # 7 Polarization: -109.47 SS G_CDS: -2.88 Total: -112.35 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Atomic # 17 Polarization: -2.36 SS G_CDS: -0.08 Total: -2.43 kcal Total: -64.05 3.72 -60.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152385609.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.442 kcal (2) G-P(sol) polarization free energy of solvation -64.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds