Wall clock time and date at job start Tue Mar 31 2020 05:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.28770 * 124.68040 * 2 1 4 4 C 1.32523 * 117.19956 * 180.19529 * 3 2 1 5 5 C 1.47868 * 123.06321 * 179.75045 * 4 3 2 6 6 C 1.39875 * 120.04639 * 179.43285 * 5 4 3 7 7 C 1.36596 * 119.95224 * 179.78704 * 6 5 4 8 8 C 1.39484 * 120.04601 * 0.45929 * 7 6 5 9 9 N 1.38837 * 119.95060 * 179.76496 * 8 7 6 10 10 C 1.34781 * 119.99856 * 213.70010 * 9 8 7 11 11 O 1.21885 * 119.99857 * 5.28317 * 10 9 8 12 12 C 1.41041 * 119.99918 * 185.28258 * 10 9 8 13 13 H 1.08003 * 120.00197 * 0.02562 * 12 10 9 14 14 C 1.40085 * 120.00032 * 179.97438 * 12 10 9 15 15 N 1.30662 * 119.99941 * 0.02562 * 14 12 10 16 16 Si 1.86801 * 120.00082 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47286 * 60.00069 * 16 14 12 18 18 H 1.48501 * 109.47336 * 180.02562 * 16 14 12 19 19 H 1.48511 * 109.47066 * 300.00199 * 16 14 12 20 20 C 1.39481 * 120.09748 * 359.78840 * 8 7 6 21 21 C 1.36600 * 120.04258 * 359.97438 * 20 8 7 22 22 C 1.35671 * 113.87115 * 359.47678 * 4 3 2 23 23 S 1.70893 * 124.68158 * 179.64681 * 2 1 3 24 24 H 1.09003 * 109.47016 * 180.32526 * 1 2 3 25 25 H 1.08998 * 109.47337 * 300.32614 * 1 2 3 26 26 H 1.08999 * 109.47412 * 60.32718 * 1 2 3 27 27 H 1.07995 * 120.02429 * 359.97438 * 6 5 4 28 28 H 1.07998 * 119.97471 * 180.20556 * 7 6 5 29 29 H 0.96998 * 120.00232 * 33.70851 * 9 8 7 30 30 H 0.96999 * 119.99938 * 179.97438 * 15 14 12 31 31 H 1.07997 * 119.98084 * 179.97438 * 20 8 7 32 32 H 1.07996 * 120.02228 * 180.02562 * 21 20 8 33 33 H 1.08007 * 126.09664 * 180.23333 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2396 1.0589 0.0000 4 6 3.5536 0.8864 -0.0040 5 6 4.5147 2.0101 -0.0099 6 6 5.8901 1.7553 -0.0020 7 6 6.7763 2.7947 -0.0119 8 6 6.3106 4.1095 -0.0202 9 7 7.2131 5.1645 -0.0253 10 6 6.9124 6.3116 0.6152 11 8 5.8930 6.3899 1.2788 12 6 7.7774 7.4213 0.5177 13 1 8.6805 7.3521 -0.0707 14 6 7.4646 8.6138 1.1829 15 7 6.3718 8.6978 1.8943 16 14 8.6099 10.0839 1.0531 17 1 8.7355 10.4894 -0.3699 18 1 8.0571 11.2133 1.8432 19 1 9.9478 9.7174 1.5834 20 6 4.9395 4.3659 -0.0229 21 6 4.0499 3.3293 -0.0179 22 6 3.9364 -0.4151 0.0037 23 16 2.4793 -1.4053 0.0087 24 1 -0.3633 -1.0277 0.0058 25 1 -0.3634 0.5189 0.8870 26 1 -0.3634 0.5087 -0.8929 27 1 6.2510 0.7375 0.0089 28 1 7.8382 2.5984 -0.0091 29 1 8.0599 5.0760 -0.4899 30 1 6.1555 9.5234 2.3552 31 1 4.5810 5.3846 -0.0289 32 1 2.9884 3.5282 -0.0205 33 1 4.9532 -0.7793 0.0058 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153495183.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:15 Heat of formation + Delta-G solvation = 28.651329 kcal Electronic energy + Delta-G solvation = -18929.288692 eV Core-core repulsion = 15853.491968 eV Total energy + Delta-G solvation = -3075.796723 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.99047 -38.93180 -36.95817 -33.80488 -32.59071 -32.11761 -30.58885 -29.19844 -27.81409 -26.50376 -23.97823 -21.96346 -21.79519 -20.13345 -19.41549 -17.83030 -17.48932 -16.45135 -15.71785 -15.42682 -14.99015 -14.69762 -14.38091 -13.91833 -13.53414 -13.38112 -13.07620 -12.92291 -12.64979 -12.48082 -12.29315 -12.10851 -11.83835 -11.38458 -11.13764 -11.05259 -10.68766 -10.53089 -10.39484 -9.66369 -9.58404 -9.40700 -9.01300 -8.51657 -8.45134 -7.74483 -6.86991 -6.40850 -4.95729 0.60354 1.35545 1.72273 1.73375 2.08236 3.03869 3.10329 3.12127 3.14797 3.95156 4.01168 4.28710 4.56504 4.66625 4.89068 5.15484 5.20281 5.29414 5.35831 5.47289 5.53775 5.67905 5.70599 5.97660 6.10283 6.23494 6.35018 6.61588 6.91696 7.10357 7.11982 7.19288 7.41813 7.82680 7.84744 7.99079 8.17311 8.75701 9.24131 10.34296 10.55076 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.042883 B = 0.003030 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.778289 B = 9237.541098 C = 9775.944073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.051 3.949 3 N -0.466 5.466 4 C 0.142 3.858 5 C -0.095 4.095 6 C -0.071 4.071 7 C -0.186 4.186 8 C 0.215 3.785 9 N -0.698 5.698 10 C 0.540 3.460 11 O -0.565 6.565 12 C -0.537 4.537 13 H 0.070 0.930 14 C 0.087 3.913 15 N -0.744 5.744 16 Si 0.914 3.086 17 H -0.265 1.265 18 H -0.278 1.278 19 H -0.266 1.266 20 C -0.138 4.138 21 C -0.056 4.056 22 C -0.273 4.273 23 S 0.097 5.903 24 H 0.077 0.923 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.115 0.885 28 H 0.120 0.880 29 H 0.393 0.607 30 H 0.274 0.726 31 H 0.141 0.859 32 H 0.124 0.876 33 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.456 -16.677 -4.846 18.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.228 4.228 3 N -0.181 5.181 4 C 0.013 3.987 5 C -0.099 4.099 6 C -0.091 4.091 7 C -0.208 4.208 8 C 0.114 3.886 9 N -0.340 5.340 10 C 0.350 3.650 11 O -0.448 6.448 12 C -0.572 4.572 13 H 0.088 0.912 14 C -0.136 4.136 15 N -0.371 5.371 16 Si 0.738 3.262 17 H -0.190 1.190 18 H -0.203 1.203 19 H -0.190 1.190 20 C -0.159 4.159 21 C -0.075 4.075 22 C -0.411 4.411 23 S 0.351 5.649 24 H 0.096 0.904 25 H 0.106 0.894 26 H 0.106 0.894 27 H 0.133 0.867 28 H 0.138 0.862 29 H 0.226 0.774 30 H 0.085 0.915 31 H 0.159 0.841 32 H 0.142 0.858 33 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -6.758 -16.946 -4.217 18.725 hybrid contribution 1.774 1.294 -0.213 2.207 sum -4.983 -15.652 -4.431 17.013 Atomic orbital electron populations 1.20427 0.85316 1.03270 1.04562 1.26942 1.01688 0.90813 1.03348 1.66077 1.04724 1.31225 1.16026 1.18998 0.88445 0.92039 0.99247 1.17856 0.90767 0.90641 1.10643 1.20458 0.91490 0.98194 0.98926 1.20534 0.99379 0.91367 1.09486 1.18216 0.90585 0.87812 0.92001 1.44173 1.19579 1.14564 1.55683 1.16899 0.87580 0.80949 0.79568 1.90707 1.28594 1.82018 1.43515 1.19881 1.08887 0.96375 1.32047 0.91185 1.25770 0.94988 0.99716 0.93155 1.70017 1.20658 1.26373 1.20072 0.86320 0.80660 0.79994 0.79229 1.19005 1.20299 1.19034 1.21102 0.91609 1.00585 1.02576 1.20845 0.99764 0.90878 0.96046 1.27049 1.02465 0.95374 1.16229 1.83714 0.98371 1.13223 1.69613 0.90418 0.89377 0.89417 0.86683 0.86217 0.77388 0.91495 0.84122 0.85789 0.80652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 10.47 36.00 0.38 -0.24 16 2 C 0.05 0.63 7.35 -13.57 -0.10 0.53 16 3 N -0.47 -7.35 9.91 -8.39 -0.08 -7.43 16 4 C 0.14 2.27 6.66 -84.55 -0.56 1.71 16 5 C -0.09 -1.68 5.89 -104.73 -0.62 -2.29 16 6 C -0.07 -1.14 9.44 -39.56 -0.37 -1.51 16 7 C -0.19 -3.25 9.91 -39.71 -0.39 -3.64 16 8 C 0.22 4.57 6.27 -83.76 -0.53 4.04 16 9 N -0.70 -15.67 5.28 -12.56 -0.07 -15.74 16 10 C 0.54 14.91 7.27 -15.19 -0.11 14.80 16 11 O -0.56 -17.63 12.54 5.02 0.06 -17.57 16 12 C -0.54 -14.48 9.27 -37.83 -0.35 -14.83 16 13 H 0.07 1.70 7.85 -52.48 -0.41 1.29 16 14 C 0.09 2.32 5.50 -17.36 -0.10 2.23 16 15 N -0.74 -21.35 11.71 55.55 0.65 -20.70 16 16 Si 0.91 19.17 29.56 -169.99 -5.02 14.14 16 17 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 18 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 19 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 20 C -0.14 -3.05 8.58 -39.71 -0.34 -3.39 16 21 C -0.06 -1.09 9.59 -39.56 -0.38 -1.47 16 22 C -0.27 -3.52 10.66 29.81 0.32 -3.20 16 23 S 0.10 1.02 23.14 -107.50 -2.49 -1.47 16 24 H 0.08 0.44 8.12 -51.93 -0.42 0.02 16 25 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.12 1.46 6.67 -52.49 -0.35 1.11 16 28 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 29 H 0.39 7.45 8.77 -40.82 -0.36 7.09 16 30 H 0.27 7.11 8.29 -40.82 -0.34 6.77 16 31 H 0.14 3.52 6.42 -52.49 -0.34 3.18 16 32 H 0.12 2.36 7.70 -52.49 -0.40 1.95 16 33 H 0.18 1.85 6.91 -52.48 -0.36 1.49 16 LS Contribution 305.39 15.07 4.60 4.60 Total: -1.00 -33.45 305.39 -8.55 -41.99 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -3.05 Total: 9.43 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: -3.15 Total: -7.27 kcal Atomic # 7 Polarization: -44.37 SS G_CDS: 0.50 Total: -43.87 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: 0.06 Total: -17.57 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.02 Total: 14.14 kcal Atomic # 16 Polarization: 1.02 SS G_CDS: -2.49 Total: -1.47 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.45 -8.55 -41.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153495183.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.646 kcal (2) G-P(sol) polarization free energy of solvation -33.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds