Wall clock time and date at job start Tue Mar 31 2020 05:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.28770 * 124.68040 * 2 1 4 4 C 1.32523 * 117.19956 * 180.19529 * 3 2 1 5 5 C 1.47868 * 123.06321 * 179.75045 * 4 3 2 6 6 C 1.39875 * 120.04639 * 179.43285 * 5 4 3 7 7 C 1.36596 * 119.95224 * 179.78704 * 6 5 4 8 8 C 1.39484 * 120.04601 * 0.45929 * 7 6 5 9 9 N 1.38837 * 119.95060 * 179.76496 * 8 7 6 10 10 C 1.34781 * 119.99856 * 213.70010 * 9 8 7 11 11 O 1.21885 * 119.99857 * 5.28317 * 10 9 8 12 12 C 1.41041 * 119.99918 * 185.28258 * 10 9 8 13 13 H 1.08003 * 120.00197 * 0.02562 * 12 10 9 14 14 C 1.40085 * 120.00032 * 179.97438 * 12 10 9 15 15 N 1.30662 * 119.99941 * 0.02562 * 14 12 10 16 16 Si 1.86801 * 120.00082 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47286 * 60.00069 * 16 14 12 18 18 H 1.48501 * 109.47336 * 180.02562 * 16 14 12 19 19 H 1.48511 * 109.47066 * 300.00199 * 16 14 12 20 20 C 1.39481 * 120.09748 * 359.78840 * 8 7 6 21 21 C 1.36600 * 120.04258 * 359.97438 * 20 8 7 22 22 C 1.35671 * 113.87115 * 359.47678 * 4 3 2 23 23 S 1.70893 * 124.68158 * 179.64681 * 2 1 3 24 24 H 1.09003 * 109.47016 * 180.32526 * 1 2 3 25 25 H 1.08998 * 109.47337 * 300.32614 * 1 2 3 26 26 H 1.08999 * 109.47412 * 60.32718 * 1 2 3 27 27 H 1.07995 * 120.02429 * 359.97438 * 6 5 4 28 28 H 1.07998 * 119.97471 * 180.20556 * 7 6 5 29 29 H 0.96998 * 120.00232 * 33.70851 * 9 8 7 30 30 H 0.96999 * 119.99938 * 179.97438 * 15 14 12 31 31 H 1.07997 * 119.98084 * 179.97438 * 20 8 7 32 32 H 1.07996 * 120.02228 * 180.02562 * 21 20 8 33 33 H 1.08007 * 126.09664 * 180.23333 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2396 1.0589 0.0000 4 6 3.5536 0.8864 -0.0040 5 6 4.5147 2.0101 -0.0099 6 6 5.8901 1.7553 -0.0020 7 6 6.7763 2.7947 -0.0119 8 6 6.3106 4.1095 -0.0202 9 7 7.2131 5.1645 -0.0253 10 6 6.9124 6.3116 0.6152 11 8 5.8930 6.3899 1.2788 12 6 7.7774 7.4213 0.5177 13 1 8.6805 7.3521 -0.0707 14 6 7.4646 8.6138 1.1829 15 7 6.3718 8.6978 1.8943 16 14 8.6099 10.0839 1.0531 17 1 8.7355 10.4894 -0.3699 18 1 8.0571 11.2133 1.8432 19 1 9.9478 9.7174 1.5834 20 6 4.9395 4.3659 -0.0229 21 6 4.0499 3.3293 -0.0179 22 6 3.9364 -0.4151 0.0037 23 16 2.4793 -1.4053 0.0087 24 1 -0.3633 -1.0277 0.0058 25 1 -0.3634 0.5189 0.8870 26 1 -0.3634 0.5087 -0.8929 27 1 6.2510 0.7375 0.0089 28 1 7.8382 2.5984 -0.0091 29 1 8.0599 5.0760 -0.4899 30 1 6.1555 9.5234 2.3552 31 1 4.5810 5.3846 -0.0289 32 1 2.9884 3.5282 -0.0205 33 1 4.9532 -0.7793 0.0058 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153495183.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:14 Heat of formation + Delta-G solvation = 5.721385 kcal Electronic energy + Delta-G solvation = -18930.283009 eV Core-core repulsion = 15853.491968 eV Total energy + Delta-G solvation = -3076.791040 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.25424 -40.44399 -38.68573 -35.53389 -34.54711 -33.31982 -32.04491 -30.59829 -29.07915 -28.23636 -25.24132 -23.45398 -23.20681 -21.73310 -20.63570 -19.50987 -18.82280 -18.01069 -17.63300 -16.81191 -16.04424 -15.96706 -15.82603 -15.57931 -14.90473 -14.68919 -14.49186 -14.39523 -14.00717 -13.88305 -13.45247 -13.26284 -13.08286 -13.02534 -12.75706 -12.71394 -12.29656 -12.08627 -12.02067 -11.19638 -10.90688 -10.57698 -10.35530 -10.06997 -9.84818 -9.72715 -8.42923 -8.40770 -7.05860 -0.43590 0.39231 0.46131 0.59635 0.74820 1.38613 1.40814 1.54474 1.91250 2.19786 2.38183 2.95084 3.06168 3.10358 3.63884 3.93574 3.96242 4.08804 4.28581 4.37429 4.51395 4.59702 4.67323 4.75663 4.80414 4.96282 5.14173 5.16591 5.18992 5.48683 5.54549 5.62862 5.84899 5.89152 6.16887 6.41267 6.70315 6.84349 7.38046 8.36199 8.54577 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.042883 B = 0.003030 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.778289 B = 9237.541098 C = 9775.944073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.034 3.966 3 N -0.512 5.512 4 C 0.100 3.900 5 C -0.082 4.082 6 C -0.064 4.064 7 C -0.166 4.166 8 C 0.176 3.824 9 N -0.692 5.692 10 C 0.526 3.474 11 O -0.616 6.616 12 C -0.563 4.563 13 H 0.093 0.907 14 C 0.030 3.970 15 N -0.800 5.800 16 Si 1.004 2.996 17 H -0.253 1.253 18 H -0.273 1.273 19 H -0.251 1.251 20 C -0.161 4.161 21 C -0.072 4.072 22 C -0.264 4.264 23 S 0.177 5.823 24 H 0.107 0.893 25 H 0.088 0.912 26 H 0.091 0.909 27 H 0.164 0.836 28 H 0.154 0.846 29 H 0.408 0.592 30 H 0.279 0.721 31 H 0.094 0.906 32 H 0.115 0.885 33 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.997 -19.849 -5.495 20.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.245 4.245 3 N -0.227 5.227 4 C -0.029 4.029 5 C -0.086 4.086 6 C -0.083 4.083 7 C -0.188 4.188 8 C 0.077 3.923 9 N -0.336 5.336 10 C 0.336 3.664 11 O -0.503 6.503 12 C -0.598 4.598 13 H 0.112 0.888 14 C -0.189 4.189 15 N -0.428 5.428 16 Si 0.822 3.178 17 H -0.177 1.177 18 H -0.198 1.198 19 H -0.175 1.175 20 C -0.182 4.182 21 C -0.091 4.091 22 C -0.403 4.403 23 S 0.432 5.568 24 H 0.126 0.874 25 H 0.107 0.893 26 H 0.109 0.891 27 H 0.181 0.819 28 H 0.172 0.828 29 H 0.244 0.756 30 H 0.090 0.910 31 H 0.112 0.888 32 H 0.133 0.867 33 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -5.300 -20.194 -4.904 21.446 hybrid contribution 1.137 1.938 -0.045 2.247 sum -4.163 -18.256 -4.950 19.368 Atomic orbital electron populations 1.20610 0.83033 1.05317 1.04752 1.27576 1.03372 0.91229 1.02286 1.66052 1.05214 1.33552 1.17921 1.18893 0.88598 0.92538 1.02914 1.18183 0.92440 0.90250 1.07712 1.20934 0.90308 1.00068 0.97018 1.20866 1.01425 0.89548 1.06913 1.18433 0.89796 0.89133 0.94964 1.43641 1.20427 1.13871 1.55634 1.17284 0.87068 0.82582 0.79456 1.90666 1.30499 1.83389 1.45788 1.20440 1.09707 0.96909 1.32751 0.88845 1.27087 0.96606 1.03306 0.91877 1.70190 1.23328 1.27757 1.21540 0.84976 0.78062 0.74917 0.79811 1.17663 1.19785 1.17462 1.20818 0.93214 0.99017 1.05155 1.20767 0.99004 0.91848 0.97506 1.27511 1.05107 0.94873 1.12810 1.83453 0.95580 1.10459 1.67260 0.87388 0.89335 0.89075 0.81853 0.82795 0.75567 0.91046 0.88811 0.86656 0.77921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.11 10.47 71.23 0.75 -0.36 16 2 C 0.03 0.75 7.35 88.55 0.65 1.40 16 3 N -0.51 -15.91 9.91 -180.47 -1.79 -17.69 16 4 C 0.10 3.06 6.66 41.00 0.27 3.33 16 5 C -0.08 -2.87 5.89 -19.94 -0.12 -2.98 16 6 C -0.06 -1.89 9.44 22.28 0.21 -1.68 16 7 C -0.17 -5.55 9.91 22.19 0.22 -5.33 16 8 C 0.18 7.76 6.27 38.63 0.24 8.00 16 9 N -0.69 -32.34 5.28 -311.77 -1.65 -33.99 16 10 C 0.53 30.70 7.27 84.93 0.62 31.31 16 11 O -0.62 -41.48 12.54 -4.94 -0.06 -41.54 16 12 C -0.56 -31.30 9.27 23.41 0.22 -31.08 16 13 H 0.09 4.55 7.85 -2.91 -0.02 4.52 16 14 C 0.03 1.62 5.50 85.32 0.47 2.09 16 15 N -0.80 -48.27 11.71 21.84 0.26 -48.01 16 16 Si 1.00 39.62 29.56 68.60 2.03 41.65 16 17 H -0.25 -9.38 7.11 99.48 0.71 -8.68 16 18 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 19 H -0.25 -9.24 7.11 99.48 0.71 -8.53 16 20 C -0.16 -7.76 8.58 22.19 0.19 -7.57 16 21 C -0.07 -3.01 9.59 22.28 0.21 -2.80 16 22 C -0.26 -5.80 10.66 67.22 0.72 -5.09 16 23 S 0.18 3.03 23.14 -56.49 -1.31 1.73 16 24 H 0.11 0.85 8.12 -2.39 -0.02 0.83 16 25 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.16 3.24 6.67 -2.91 -0.02 3.22 16 28 H 0.15 4.04 8.06 -2.91 -0.02 4.01 16 29 H 0.41 15.71 8.77 -92.71 -0.81 14.89 16 30 H 0.28 15.21 8.29 -92.71 -0.77 14.44 16 31 H 0.09 5.33 6.42 -2.91 -0.02 5.31 16 32 H 0.12 4.86 7.70 -2.91 -0.02 4.84 16 33 H 0.20 3.14 6.91 -2.91 -0.02 3.12 16 Total: -1.00 -80.33 305.39 2.48 -77.84 By element: Atomic # 1 Polarization: 30.41 SS G_CDS: 0.35 Total: 30.77 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: 4.65 Total: -10.75 kcal Atomic # 7 Polarization: -96.51 SS G_CDS: -3.18 Total: -99.69 kcal Atomic # 8 Polarization: -41.48 SS G_CDS: -0.06 Total: -41.54 kcal Atomic # 14 Polarization: 39.62 SS G_CDS: 2.03 Total: 41.65 kcal Atomic # 16 Polarization: 3.03 SS G_CDS: -1.31 Total: 1.73 kcal Total: -80.33 2.48 -77.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153495183.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.565 kcal (2) G-P(sol) polarization free energy of solvation -80.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds