Wall clock time and date at job start Tue Mar 31 2020 06:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30619 * 1 3 3 Si 1.86802 * 120.00174 * 2 1 4 4 H 1.48500 * 109.47281 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47086 * 300.00424 * 3 2 1 6 6 H 1.48499 * 109.46785 * 60.00236 * 3 2 1 7 7 C 1.40141 * 119.99857 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00038 * 179.72362 * 7 2 1 9 9 C 1.41712 * 120.00223 * 359.97438 * 7 2 1 10 10 O 1.21794 * 119.99868 * 359.72585 * 9 7 2 11 11 N 1.34786 * 120.00086 * 179.72573 * 9 7 2 12 12 C 1.39474 * 119.99881 * 174.48162 * 11 9 7 13 13 C 1.38927 * 120.12453 * 335.13336 * 12 11 9 14 14 C 1.38093 * 119.98828 * 179.97438 * 13 12 11 15 15 C 1.38466 * 120.24266 * 0.02562 * 14 13 12 16 16 C 1.38169 * 120.25053 * 0.02562 * 15 14 13 17 17 C 1.38761 * 120.01297 * 359.69279 * 16 15 14 18 18 N 1.39623 * 120.12506 * 180.29989 * 17 16 15 19 19 C 1.46506 * 119.99793 * 0.27913 * 18 17 16 20 20 C 1.52998 * 109.46884 * 179.97438 * 19 18 17 21 21 F 1.39900 * 109.47480 * 59.99563 * 20 19 18 22 22 F 1.39905 * 109.47198 * 180.02562 * 20 19 18 23 23 F 1.39901 * 109.47223 * 299.99780 * 20 19 18 24 24 H 0.97002 * 120.00060 * 359.97438 * 1 2 3 25 25 H 0.96991 * 119.99875 * 354.47677 * 11 9 7 26 26 H 1.07999 * 120.00870 * 359.95326 * 13 12 11 27 27 H 1.07999 * 119.87511 * 179.97438 * 14 13 12 28 28 H 1.07998 * 119.86899 * 179.97438 * 15 14 13 29 29 H 1.08004 * 119.99019 * 179.97438 * 16 15 14 30 30 H 0.96994 * 120.00275 * 180.27479 * 18 17 16 31 31 H 1.08996 * 109.47329 * 299.99685 * 19 18 17 32 32 H 1.09003 * 109.47420 * 59.99856 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 3.7002 1.3464 -0.0006 5 1 1.8814 2.3965 -1.2124 6 1 1.8815 2.3963 1.2125 7 6 2.0069 -1.2137 -0.0005 8 1 3.0869 -1.2137 -0.0051 9 6 1.2983 -2.4409 -0.0005 10 8 0.0804 -2.4409 0.0050 11 7 1.9722 -3.6082 -0.0067 12 6 1.2802 -4.8136 0.1095 13 6 0.0369 -4.8469 0.7285 14 6 -0.6460 -6.0418 0.8415 15 6 -0.0961 -7.2095 0.3401 16 6 1.1402 -7.1880 -0.2764 17 6 1.8330 -5.9922 -0.4009 18 7 3.0797 -5.9666 -1.0290 19 6 3.6559 -7.2030 -1.5637 20 6 5.0159 -6.9000 -2.1958 21 9 5.8725 -6.3672 -1.2265 22 9 5.5659 -8.0805 -2.7069 23 9 4.8525 -5.9751 -3.2327 24 1 -0.4850 0.8401 0.0004 25 1 2.9384 -3.6099 -0.0919 26 1 -0.3953 -3.9386 1.1216 27 1 -1.6123 -6.0657 1.3234 28 1 -0.6353 -8.1408 0.4321 29 1 1.5654 -8.1014 -0.6656 30 1 3.5642 -5.1304 -1.1115 31 1 3.7828 -7.9237 -0.7560 32 1 2.9887 -7.6178 -2.3193 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153687325.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:11 Heat of formation + Delta-G solvation = -157.546440 kcal Electronic energy + Delta-G solvation = -22511.465337 eV Core-core repulsion = 18442.984862 eV Total energy + Delta-G solvation = -4068.480476 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.32115 -47.85607 -47.77493 -39.54076 -37.25342 -35.50875 -33.52686 -32.43758 -30.28724 -29.24557 -27.35728 -26.23051 -23.77162 -22.13116 -21.17958 -19.85287 -18.77389 -18.75596 -18.31511 -17.37794 -16.60411 -15.89613 -15.56910 -15.17618 -14.93207 -14.64984 -14.26512 -14.20563 -14.07052 -13.94947 -13.92227 -13.89232 -13.49557 -13.25811 -12.66372 -12.61888 -12.00727 -11.90137 -11.39805 -11.15620 -11.04679 -10.80198 -10.59187 -10.32166 -9.92978 -9.38954 -8.89383 -7.81750 -7.52145 -6.59629 -6.38970 -4.92042 2.10146 2.12551 2.41478 3.02710 3.11280 3.12803 3.16147 3.51933 3.80989 3.96046 4.11631 4.28423 4.57365 4.65748 4.97373 4.99186 5.34394 5.59950 5.70171 5.79293 6.11146 6.13483 6.55320 6.72477 6.85251 7.20994 7.24191 7.40656 7.52320 7.65820 7.85542 8.03307 8.23566 8.78386 9.25555 10.35862 10.56468 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.014684 B = 0.005122 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.397833 B = 5465.006407 C = 7126.848281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.747 5.747 2 C 0.089 3.911 3 Si 0.912 3.088 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.539 4.539 8 H 0.069 0.931 9 C 0.545 3.455 10 O -0.564 6.564 11 N -0.697 5.697 12 C 0.142 3.858 13 C -0.104 4.104 14 C -0.143 4.143 15 C -0.129 4.129 16 C -0.174 4.174 17 C 0.147 3.853 18 N -0.752 5.752 19 C 0.095 3.905 20 C 0.446 3.554 21 F -0.178 7.178 22 F -0.179 7.179 23 F -0.177 7.177 24 H 0.272 0.728 25 H 0.384 0.616 26 H 0.154 0.846 27 H 0.113 0.887 28 H 0.110 0.890 29 H 0.111 0.889 30 H 0.402 0.598 31 H 0.100 0.900 32 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.643 -13.306 -2.105 15.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.374 5.374 2 C -0.134 4.134 3 Si 0.736 3.264 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.574 4.574 8 H 0.088 0.912 9 C 0.354 3.646 10 O -0.448 6.448 11 N -0.340 5.340 12 C 0.040 3.960 13 C -0.125 4.125 14 C -0.163 4.163 15 C -0.149 4.149 16 C -0.197 4.197 17 C 0.046 3.954 18 N -0.390 5.390 19 C -0.032 4.032 20 C 0.392 3.608 21 F -0.160 7.160 22 F -0.161 7.161 23 F -0.158 7.158 24 H 0.083 0.917 25 H 0.217 0.783 26 H 0.171 0.829 27 H 0.131 0.869 28 H 0.128 0.872 29 H 0.129 0.871 30 H 0.238 0.762 31 H 0.118 0.882 32 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 6.674 -13.242 -2.158 14.985 hybrid contribution 1.457 1.074 -0.339 1.842 sum 8.131 -12.169 -2.497 14.847 Atomic orbital electron populations 1.70008 1.07265 1.27805 1.32316 1.25745 0.94639 1.00662 0.92380 0.86243 0.80548 0.81172 0.78455 1.18590 1.19934 1.19885 1.20073 0.94345 0.90069 1.52912 0.91239 1.17009 0.87571 0.81971 0.78016 1.90604 1.13521 1.85813 1.54820 1.43981 1.09075 1.04562 1.76431 1.17604 0.94773 0.84954 0.98659 1.21521 0.93944 0.99214 0.97863 1.20882 1.00141 0.92413 1.02858 1.20627 0.95416 0.97737 1.01153 1.20218 0.97091 0.95043 1.07365 1.17431 0.86546 0.93993 0.97413 1.43774 1.20326 1.07886 1.67003 1.22266 0.89260 0.91032 1.00638 1.20662 0.88517 0.74535 0.77094 1.93225 1.73308 1.86603 1.62845 1.93201 1.87443 1.47620 1.87799 1.93242 1.95635 1.66958 1.59991 0.91669 0.78300 0.82909 0.86936 0.87152 0.87058 0.76211 0.88175 0.88209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -21.24 11.73 55.55 0.65 -20.59 16 2 C 0.09 2.35 5.50 -17.35 -0.10 2.26 16 3 Si 0.91 19.20 29.56 -169.99 -5.02 14.18 16 4 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 5 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.54 -14.49 9.31 -37.54 -0.35 -14.84 16 8 H 0.07 1.71 7.85 -52.48 -0.41 1.30 16 9 C 0.55 14.87 7.37 -14.93 -0.11 14.76 16 10 O -0.56 -17.21 12.03 5.10 0.06 -17.15 16 11 N -0.70 -15.47 5.17 -12.29 -0.06 -15.54 16 12 C 0.14 2.94 6.45 -83.53 -0.54 2.40 16 13 C -0.10 -2.22 8.71 -39.38 -0.34 -2.56 16 14 C -0.14 -2.52 10.04 -39.55 -0.40 -2.92 16 15 C -0.13 -1.98 10.04 -39.52 -0.40 -2.37 16 16 C -0.17 -2.60 9.31 -39.41 -0.37 -2.96 16 17 C 0.15 2.48 6.68 -83.52 -0.56 1.92 16 18 N -0.75 -10.47 5.56 -58.44 -0.32 -10.79 16 19 C 0.10 0.97 4.88 -4.04 -0.02 0.95 16 20 C 0.45 4.73 3.11 37.16 0.12 4.84 16 21 F -0.18 -2.07 17.18 2.25 0.04 -2.04 16 22 F -0.18 -1.80 17.32 2.25 0.04 -1.77 16 23 F -0.18 -2.18 17.18 2.25 0.04 -2.14 16 24 H 0.27 6.98 8.29 -40.82 -0.34 6.64 16 25 H 0.38 7.40 7.30 -40.82 -0.30 7.11 16 26 H 0.15 3.80 5.78 -52.49 -0.30 3.49 16 27 H 0.11 1.76 8.06 -52.49 -0.42 1.33 16 28 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 29 H 0.11 1.30 6.73 -52.48 -0.35 0.95 16 30 H 0.40 5.76 6.79 -40.82 -0.28 5.48 16 31 H 0.10 0.84 7.94 -51.93 -0.41 0.43 16 32 H 0.10 0.90 7.96 -51.93 -0.41 0.48 16 LS Contribution 293.19 15.07 4.42 4.42 Total: -1.00 -31.59 293.19 -5.67 -37.26 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -2.45 Total: 12.67 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -3.06 Total: 1.47 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: 0.26 Total: -46.92 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: 0.06 Total: -17.15 kcal Atomic # 9 Polarization: -6.06 SS G_CDS: 0.12 Total: -5.94 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.02 Total: 14.18 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.59 -5.67 -37.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153687325.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.283 kcal (2) G-P(sol) polarization free energy of solvation -31.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds