Wall clock time and date at job start Tue Mar 31 2020 06:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30619 * 1 3 3 Si 1.86802 * 120.00174 * 2 1 4 4 H 1.48500 * 109.47281 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47086 * 300.00424 * 3 2 1 6 6 H 1.48499 * 109.46785 * 60.00236 * 3 2 1 7 7 C 1.40141 * 119.99857 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00038 * 179.72362 * 7 2 1 9 9 C 1.41712 * 120.00223 * 359.97438 * 7 2 1 10 10 O 1.21794 * 119.99868 * 359.72585 * 9 7 2 11 11 N 1.34786 * 120.00086 * 179.72573 * 9 7 2 12 12 C 1.39474 * 119.99881 * 174.48162 * 11 9 7 13 13 C 1.38927 * 120.12453 * 335.13336 * 12 11 9 14 14 C 1.38093 * 119.98828 * 179.97438 * 13 12 11 15 15 C 1.38466 * 120.24266 * 0.02562 * 14 13 12 16 16 C 1.38169 * 120.25053 * 0.02562 * 15 14 13 17 17 C 1.38761 * 120.01297 * 359.69279 * 16 15 14 18 18 N 1.39623 * 120.12506 * 180.29989 * 17 16 15 19 19 C 1.46506 * 119.99793 * 0.27913 * 18 17 16 20 20 C 1.52998 * 109.46884 * 179.97438 * 19 18 17 21 21 F 1.39900 * 109.47480 * 59.99563 * 20 19 18 22 22 F 1.39905 * 109.47198 * 180.02562 * 20 19 18 23 23 F 1.39901 * 109.47223 * 299.99780 * 20 19 18 24 24 H 0.97002 * 120.00060 * 359.97438 * 1 2 3 25 25 H 0.96991 * 119.99875 * 354.47677 * 11 9 7 26 26 H 1.07999 * 120.00870 * 359.95326 * 13 12 11 27 27 H 1.07999 * 119.87511 * 179.97438 * 14 13 12 28 28 H 1.07998 * 119.86899 * 179.97438 * 15 14 13 29 29 H 1.08004 * 119.99019 * 179.97438 * 16 15 14 30 30 H 0.96994 * 120.00275 * 180.27479 * 18 17 16 31 31 H 1.08996 * 109.47329 * 299.99685 * 19 18 17 32 32 H 1.09003 * 109.47420 * 59.99856 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 3.7002 1.3464 -0.0006 5 1 1.8814 2.3965 -1.2124 6 1 1.8815 2.3963 1.2125 7 6 2.0069 -1.2137 -0.0005 8 1 3.0869 -1.2137 -0.0051 9 6 1.2983 -2.4409 -0.0005 10 8 0.0804 -2.4409 0.0050 11 7 1.9722 -3.6082 -0.0067 12 6 1.2802 -4.8136 0.1095 13 6 0.0369 -4.8469 0.7285 14 6 -0.6460 -6.0418 0.8415 15 6 -0.0961 -7.2095 0.3401 16 6 1.1402 -7.1880 -0.2764 17 6 1.8330 -5.9922 -0.4009 18 7 3.0797 -5.9666 -1.0290 19 6 3.6559 -7.2030 -1.5637 20 6 5.0159 -6.9000 -2.1958 21 9 5.8725 -6.3672 -1.2265 22 9 5.5659 -8.0805 -2.7069 23 9 4.8525 -5.9751 -3.2327 24 1 -0.4850 0.8401 0.0004 25 1 2.9384 -3.6099 -0.0919 26 1 -0.3953 -3.9386 1.1216 27 1 -1.6123 -6.0657 1.3234 28 1 -0.6353 -8.1408 0.4321 29 1 1.5654 -8.1014 -0.6656 30 1 3.5642 -5.1304 -1.1115 31 1 3.7828 -7.9237 -0.7560 32 1 2.9887 -7.6178 -2.3193 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153687325.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:11 Heat of formation + Delta-G solvation = -179.451795 kcal Electronic energy + Delta-G solvation = -22512.415225 eV Core-core repulsion = 18442.984862 eV Total energy + Delta-G solvation = -4069.430363 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.083 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -51.17881 -48.69037 -48.67135 -41.05062 -39.00536 -36.68149 -35.32773 -34.44236 -31.43623 -30.81045 -28.79115 -27.89733 -24.81093 -23.63362 -22.45994 -21.58755 -19.91026 -19.63224 -19.47935 -18.84059 -17.93808 -17.67223 -17.09826 -16.47031 -15.87994 -15.74961 -15.53432 -15.38300 -15.14854 -15.09222 -14.89659 -14.81158 -14.78736 -14.72482 -14.47644 -14.15974 -13.45669 -13.19486 -12.88210 -12.81310 -12.71707 -12.39695 -12.10369 -11.99157 -11.16176 -11.09808 -10.79051 -9.78268 -9.04769 -8.38082 -8.05367 -7.00113 0.68897 0.76018 1.37552 1.38285 1.55616 1.56183 2.08206 2.20391 2.38215 2.68687 2.97291 2.99089 3.11185 3.27511 3.67472 4.06751 4.23259 4.28096 4.34359 4.54873 4.76532 4.81231 5.14278 5.20866 5.34071 5.51496 5.82469 5.91140 5.98002 6.13687 6.19657 6.42491 6.64214 6.73567 7.39535 8.38987 8.57330 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.014684 B = 0.005122 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.397833 B = 5465.006407 C = 7126.848281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.033 3.967 3 Si 0.999 3.001 4 H -0.248 1.248 5 H -0.267 1.267 6 H -0.266 1.266 7 C -0.567 4.567 8 H 0.087 0.913 9 C 0.531 3.469 10 O -0.609 6.609 11 N -0.691 5.691 12 C 0.095 3.905 13 C -0.134 4.134 14 C -0.156 4.156 15 C -0.108 4.108 16 C -0.168 4.168 17 C 0.162 3.838 18 N -0.753 5.753 19 C 0.093 3.907 20 C 0.451 3.549 21 F -0.186 7.186 22 F -0.173 7.173 23 F -0.189 7.189 24 H 0.279 0.721 25 H 0.396 0.604 26 H 0.103 0.897 27 H 0.125 0.875 28 H 0.154 0.846 29 H 0.159 0.841 30 H 0.397 0.603 31 H 0.130 0.870 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.326 -15.534 -2.748 18.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.185 4.185 3 Si 0.818 3.182 4 H -0.171 1.171 5 H -0.192 1.192 6 H -0.191 1.191 7 C -0.602 4.602 8 H 0.105 0.895 9 C 0.340 3.660 10 O -0.497 6.497 11 N -0.335 5.335 12 C -0.005 4.005 13 C -0.156 4.156 14 C -0.177 4.177 15 C -0.128 4.128 16 C -0.190 4.190 17 C 0.060 3.940 18 N -0.389 5.389 19 C -0.033 4.033 20 C 0.396 3.604 21 F -0.168 7.168 22 F -0.155 7.155 23 F -0.171 7.171 24 H 0.089 0.911 25 H 0.230 0.770 26 H 0.121 0.879 27 H 0.143 0.857 28 H 0.172 0.828 29 H 0.176 0.824 30 H 0.232 0.768 31 H 0.147 0.853 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 8.407 -15.546 -2.812 17.896 hybrid contribution 0.946 1.545 -0.155 1.818 sum 9.352 -14.001 -2.967 17.097 Atomic orbital electron populations 1.70160 1.09625 1.29388 1.33698 1.26981 0.95480 1.05034 0.90980 0.84943 0.79332 0.75143 0.78739 1.17054 1.19157 1.19093 1.20591 0.95368 0.90793 1.53471 0.89491 1.17347 0.87299 0.83701 0.77687 1.90574 1.15381 1.87020 1.56675 1.43446 1.09431 1.04254 1.76383 1.17824 0.95413 0.85676 1.01586 1.21254 0.95352 0.99013 0.99964 1.21044 1.00726 0.92126 1.03773 1.21108 0.95341 0.98047 0.98275 1.20751 0.96560 0.95692 1.06029 1.17472 0.87313 0.93120 0.96082 1.43893 1.19329 1.09316 1.66352 1.22573 0.88967 0.89644 1.02071 1.20705 0.88688 0.74318 0.76646 1.93216 1.73658 1.86782 1.63095 1.93216 1.87391 1.47139 1.87708 1.93223 1.95692 1.67565 1.60618 0.91094 0.76981 0.87930 0.85700 0.82850 0.82358 0.76776 0.85261 0.85983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -47.78 11.73 21.85 0.26 -47.53 16 2 C 0.03 1.82 5.50 85.34 0.47 2.29 16 3 Si 1.00 39.92 29.56 68.60 2.03 41.94 16 4 H -0.25 -9.19 7.11 99.48 0.71 -8.48 16 5 H -0.27 -10.25 7.11 99.48 0.71 -9.55 16 6 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 7 C -0.57 -31.63 9.31 23.59 0.22 -31.41 16 8 H 0.09 4.34 7.85 -2.91 -0.02 4.32 16 9 C 0.53 30.71 7.37 85.10 0.63 31.33 16 10 O -0.61 -40.05 12.03 -4.65 -0.06 -40.11 16 11 N -0.69 -32.12 5.17 -310.96 -1.61 -33.72 16 12 C 0.10 4.06 6.45 38.47 0.25 4.30 16 13 C -0.13 -6.08 8.71 22.40 0.20 -5.88 16 14 C -0.16 -5.49 10.04 22.29 0.22 -5.27 16 15 C -0.11 -2.91 10.04 22.31 0.22 -2.69 16 16 C -0.17 -4.27 9.31 22.38 0.21 -4.06 16 17 C 0.16 5.18 6.68 38.41 0.26 5.43 16 18 N -0.75 -19.20 5.56 -338.80 -1.88 -21.08 16 19 C 0.09 1.51 4.88 86.38 0.42 1.93 16 20 C 0.45 8.31 3.11 71.98 0.22 8.53 16 21 F -0.19 -3.94 17.18 44.97 0.77 -3.17 16 22 F -0.17 -2.95 17.32 44.97 0.78 -2.17 16 23 F -0.19 -4.32 17.18 44.97 0.77 -3.55 16 24 H 0.28 14.95 8.29 -92.71 -0.77 14.18 16 25 H 0.40 15.78 7.30 -92.71 -0.68 15.10 16 26 H 0.10 5.66 5.78 -2.91 -0.02 5.64 16 27 H 0.13 3.91 8.06 -2.91 -0.02 3.88 16 28 H 0.15 2.88 8.06 -2.91 -0.02 2.85 16 29 H 0.16 2.59 6.73 -2.91 -0.02 2.57 16 30 H 0.40 10.93 6.79 -92.71 -0.63 10.30 16 31 H 0.13 1.46 7.94 -2.39 -0.02 1.44 16 32 H 0.12 1.55 7.96 -2.39 -0.02 1.53 16 Total: -1.00 -74.87 293.19 4.28 -70.59 By element: Atomic # 1 Polarization: 34.39 SS G_CDS: -0.10 Total: 34.29 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: 3.32 Total: 4.51 kcal Atomic # 7 Polarization: -99.10 SS G_CDS: -3.23 Total: -102.33 kcal Atomic # 8 Polarization: -40.05 SS G_CDS: -0.06 Total: -40.11 kcal Atomic # 9 Polarization: -11.22 SS G_CDS: 2.32 Total: -8.89 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 2.03 Total: 41.94 kcal Total: -74.87 4.28 -70.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153687325.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.865 kcal (2) G-P(sol) polarization free energy of solvation -74.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds