Wall clock time and date at job start Tue Mar 31 2020 05:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33756 * 122.07881 * 2 1 4 4 S 1.76252 * 108.21470 * 180.02562 * 3 2 1 5 5 C 1.76178 * 89.83679 * 359.97438 * 4 3 2 6 6 C 1.47866 * 125.46709 * 179.97438 * 5 4 3 7 7 C 1.39686 * 120.09627 * 180.02562 * 6 5 4 8 8 C 1.38045 * 120.01922 * 179.97438 * 7 6 5 9 9 C 1.38198 * 120.22754 * 359.97438 * 8 7 6 10 10 C 1.39147 * 120.20322 * 0.02562 * 9 8 7 11 11 N 1.39524 * 120.01070 * 180.02562 * 10 9 8 12 12 C 1.34785 * 119.99672 * 213.36134 * 11 10 9 13 13 O 1.21749 * 120.00133 * 5.26861 * 12 11 10 14 14 C 1.46130 * 119.99829 * 185.27267 * 12 11 10 15 15 H 1.08001 * 120.00370 * 359.97438 * 14 12 11 16 16 C 1.40126 * 119.99597 * 179.97438 * 14 12 11 17 17 N 1.30638 * 120.00277 * 0.02562 * 16 14 12 18 18 Si 1.86805 * 119.99522 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47193 * 60.00372 * 18 16 14 20 20 H 1.48501 * 109.46611 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47170 * 300.00071 * 18 16 14 22 22 C 1.38781 * 119.97507 * 359.78318 * 10 9 8 23 23 N 1.30229 * 109.06078 * 0.02562 * 5 4 3 24 24 H 1.09000 * 109.47588 * 89.99755 * 1 2 3 25 25 H 1.09007 * 109.46695 * 210.00238 * 1 2 3 26 26 H 1.09001 * 109.46737 * 329.99819 * 1 2 3 27 27 H 1.08003 * 125.88934 * 0.05824 * 3 2 1 28 28 H 1.07994 * 119.99228 * 359.97438 * 7 6 5 29 29 H 1.07995 * 119.88178 * 179.97438 * 8 7 6 30 30 H 1.08000 * 119.89532 * 180.02562 * 9 8 7 31 31 H 0.96994 * 120.00771 * 33.35124 * 11 10 9 32 32 H 0.96999 * 119.99917 * 179.97438 * 17 16 14 33 33 H 1.07996 * 120.11721 * 180.25120 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2174 1.1333 0.0000 4 16 3.9285 0.7110 -0.0007 5 6 3.5015 -0.9982 -0.0002 6 6 4.4619 -2.1225 -0.0010 7 6 3.9980 -3.4401 -0.0010 8 6 4.8960 -4.4885 -0.0023 9 6 6.2555 -4.2401 -0.0041 10 6 6.7280 -2.9313 -0.0041 11 7 8.1013 -2.6851 -0.0065 12 6 8.5938 -1.6070 0.6353 13 8 7.8539 -0.9016 1.2965 14 6 10.0157 -1.2847 0.5372 15 1 10.6721 -1.9106 -0.0491 16 6 10.5275 -0.1635 1.2040 17 7 9.7336 0.5933 1.9136 18 14 12.3454 0.2480 1.0792 19 1 12.7035 0.4819 -0.3429 20 1 12.6311 1.4722 1.8698 21 1 13.1467 -0.8830 1.6119 22 6 5.8326 -1.8709 -0.0068 23 7 2.2042 -1.1125 -0.0001 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 1.8122 2.1345 0.0009 28 1 2.9365 -3.6386 0.0000 29 1 4.5349 -5.5063 -0.0018 30 1 6.9533 -5.0644 -0.0055 31 1 8.7017 -3.2898 -0.4697 32 1 10.0880 1.3692 2.3754 33 1 6.1968 -0.8542 -0.0109 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153725729.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:55 Heat of formation + Delta-G solvation = 26.729005 kcal Electronic energy + Delta-G solvation = -19218.815155 eV Core-core repulsion = 16142.935073 eV Total energy + Delta-G solvation = -3075.880081 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.70587 -39.01640 -36.97535 -33.72195 -32.65401 -32.16717 -30.25002 -28.98756 -27.50196 -26.26056 -24.67456 -22.46745 -21.30610 -20.09651 -18.67721 -17.93148 -17.31373 -16.40814 -15.63791 -15.44634 -14.85798 -14.74721 -14.42542 -14.04148 -13.63752 -13.28261 -12.87179 -12.75580 -12.60044 -12.52325 -12.45846 -11.85539 -11.44828 -11.18626 -11.14330 -11.09733 -10.88625 -10.65152 -10.40576 -9.68429 -9.48139 -9.25242 -8.96084 -8.88736 -7.97493 -7.73245 -7.16993 -6.38676 -4.86608 0.52397 1.56922 1.90632 1.96219 1.99284 3.04319 3.07688 3.11922 3.13569 3.94392 4.10084 4.20229 4.49268 4.60039 5.03575 5.21270 5.30883 5.34158 5.53772 5.59045 5.60107 5.69518 5.73333 5.84249 6.02193 6.12476 6.35768 6.39053 6.81965 6.88856 6.95106 7.20463 7.25790 7.67400 7.90680 7.97692 8.10683 8.80789 9.15425 10.33095 10.52022 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.019945 B = 0.004508 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.556301 B = 6209.479058 C = 7485.914786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.064 3.936 3 C -0.276 4.276 4 S 0.118 5.882 5 C 0.134 3.866 6 C -0.021 4.021 7 C -0.115 4.115 8 C -0.104 4.104 9 C -0.157 4.157 10 C 0.193 3.807 11 N -0.700 5.700 12 C 0.541 3.459 13 O -0.559 6.559 14 C -0.538 4.538 15 H 0.072 0.928 16 C 0.087 3.913 17 N -0.757 5.757 18 Si 0.913 3.087 19 H -0.266 1.266 20 H -0.279 1.279 21 H -0.266 1.266 22 C -0.105 4.105 23 N -0.474 5.474 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.173 0.827 28 H 0.126 0.874 29 H 0.123 0.877 30 H 0.122 0.878 31 H 0.395 0.605 32 H 0.273 0.727 33 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.065 -2.946 -5.001 12.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.070 4.070 3 C -0.415 4.415 4 S 0.377 5.623 5 C -0.140 4.140 6 C -0.025 4.025 7 C -0.138 4.138 8 C -0.123 4.123 9 C -0.179 4.179 10 C 0.093 3.907 11 N -0.343 5.343 12 C 0.348 3.652 13 O -0.441 6.441 14 C -0.574 4.574 15 H 0.090 0.910 16 C -0.135 4.135 17 N -0.385 5.385 18 Si 0.737 3.263 19 H -0.191 1.191 20 H -0.204 1.204 21 H -0.191 1.191 22 C -0.128 4.128 23 N -0.189 5.189 24 H 0.091 0.909 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.191 0.809 28 H 0.144 0.856 29 H 0.140 0.860 30 H 0.140 0.860 31 H 0.229 0.771 32 H 0.084 0.916 33 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -10.811 -2.019 -4.381 11.838 hybrid contribution 0.388 0.042 -0.178 0.429 sum -10.422 -1.977 -4.559 11.546 Atomic orbital electron populations 1.20348 0.87587 1.03050 1.02610 1.20123 0.98116 0.86615 1.02149 1.26825 0.96238 1.03553 1.14883 1.85569 1.05157 1.03738 1.67848 1.25905 0.91948 0.95110 1.01043 1.17654 0.90351 0.90122 1.04384 1.20965 0.99802 0.90686 1.02348 1.20737 0.92452 0.98460 1.00602 1.21085 0.95923 0.95229 1.05692 1.17720 0.85683 0.92191 0.95064 1.44182 1.03206 1.30600 1.56323 1.18401 0.89632 0.78465 0.78704 1.90651 1.60179 1.50166 1.43060 1.20810 0.91955 1.11886 1.32734 0.90977 1.25738 0.99459 0.95048 0.93212 1.69969 1.35937 1.11465 1.21142 0.86343 0.82410 0.78431 0.79138 1.19094 1.20377 1.19119 1.21341 0.90330 1.00718 1.00444 1.66390 1.04220 1.30646 1.17618 0.90944 0.90761 0.91024 0.80916 0.85617 0.85951 0.86020 0.77131 0.91618 0.83930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 10.28 36.01 0.37 -0.42 16 2 C 0.06 0.93 6.69 -84.39 -0.56 0.36 16 3 C -0.28 -3.87 11.08 29.16 0.32 -3.54 16 4 S 0.12 2.03 22.39 -107.50 -2.41 -0.38 16 5 C 0.13 2.46 7.35 -14.29 -0.11 2.35 16 6 C -0.02 -0.39 5.87 -105.00 -0.62 -1.01 16 7 C -0.12 -1.90 9.68 -39.11 -0.38 -2.28 16 8 C -0.10 -1.55 10.02 -39.67 -0.40 -1.95 16 9 C -0.16 -2.58 9.96 -39.26 -0.39 -2.97 16 10 C 0.19 3.92 6.27 -83.82 -0.53 3.39 16 11 N -0.70 -15.18 5.32 -11.24 -0.06 -15.24 16 12 C 0.54 14.58 7.47 -13.09 -0.10 14.48 16 13 O -0.56 -16.96 12.71 5.15 0.07 -16.90 16 14 C -0.54 -14.31 9.53 -35.71 -0.34 -14.65 16 15 H 0.07 1.73 7.85 -52.49 -0.41 1.32 16 16 C 0.09 2.30 5.50 -17.35 -0.10 2.20 16 17 N -0.76 -21.55 11.82 55.55 0.66 -20.89 16 18 Si 0.91 19.13 29.56 -169.99 -5.02 14.10 16 19 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 20 H -0.28 -5.74 7.11 56.52 0.40 -5.33 16 21 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 22 C -0.10 -2.23 8.20 -38.96 -0.32 -2.55 16 23 N -0.47 -8.11 10.11 -7.54 -0.08 -8.18 16 24 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.07 0.59 8.11 -51.93 -0.42 0.17 16 27 H 0.17 1.85 8.06 -52.48 -0.42 1.43 16 28 H 0.13 1.90 7.82 -52.49 -0.41 1.49 16 29 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 30 H 0.12 1.69 8.06 -52.49 -0.42 1.26 16 31 H 0.40 7.21 8.79 -40.82 -0.36 6.85 16 32 H 0.27 7.07 8.29 -40.82 -0.34 6.73 16 33 H 0.14 3.43 5.67 -52.49 -0.30 3.14 16 LS Contribution 308.12 15.07 4.64 4.64 Total: -1.00 -32.41 308.12 -8.49 -40.90 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -3.15 Total: 8.53 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: -3.14 Total: -6.58 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: 0.52 Total: -44.32 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: 0.07 Total: -16.90 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.02 Total: 14.10 kcal Atomic # 16 Polarization: 2.03 SS G_CDS: -2.41 Total: -0.38 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.41 -8.49 -40.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153725729.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.627 kcal (2) G-P(sol) polarization free energy of solvation -32.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds