Wall clock time and date at job start Tue Mar 31 2020 05:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33756 * 122.07881 * 2 1 4 4 S 1.76252 * 108.21470 * 180.02562 * 3 2 1 5 5 C 1.76178 * 89.83679 * 359.97438 * 4 3 2 6 6 C 1.47866 * 125.46709 * 179.97438 * 5 4 3 7 7 C 1.39686 * 120.09627 * 180.02562 * 6 5 4 8 8 C 1.38045 * 120.01922 * 179.97438 * 7 6 5 9 9 C 1.38198 * 120.22754 * 359.97438 * 8 7 6 10 10 C 1.39147 * 120.20322 * 0.02562 * 9 8 7 11 11 N 1.39524 * 120.01070 * 180.02562 * 10 9 8 12 12 C 1.34785 * 119.99672 * 213.36134 * 11 10 9 13 13 O 1.21749 * 120.00133 * 5.26861 * 12 11 10 14 14 C 1.46130 * 119.99829 * 185.27267 * 12 11 10 15 15 H 1.08001 * 120.00370 * 359.97438 * 14 12 11 16 16 C 1.40126 * 119.99597 * 179.97438 * 14 12 11 17 17 N 1.30638 * 120.00277 * 0.02562 * 16 14 12 18 18 Si 1.86805 * 119.99522 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47193 * 60.00372 * 18 16 14 20 20 H 1.48501 * 109.46611 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47170 * 300.00071 * 18 16 14 22 22 C 1.38781 * 119.97507 * 359.78318 * 10 9 8 23 23 N 1.30229 * 109.06078 * 0.02562 * 5 4 3 24 24 H 1.09000 * 109.47588 * 89.99755 * 1 2 3 25 25 H 1.09007 * 109.46695 * 210.00238 * 1 2 3 26 26 H 1.09001 * 109.46737 * 329.99819 * 1 2 3 27 27 H 1.08003 * 125.88934 * 0.05824 * 3 2 1 28 28 H 1.07994 * 119.99228 * 359.97438 * 7 6 5 29 29 H 1.07995 * 119.88178 * 179.97438 * 8 7 6 30 30 H 1.08000 * 119.89532 * 180.02562 * 9 8 7 31 31 H 0.96994 * 120.00771 * 33.35124 * 11 10 9 32 32 H 0.96999 * 119.99917 * 179.97438 * 17 16 14 33 33 H 1.07996 * 120.11721 * 180.25120 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2174 1.1333 0.0000 4 16 3.9285 0.7110 -0.0007 5 6 3.5015 -0.9982 -0.0002 6 6 4.4619 -2.1225 -0.0010 7 6 3.9980 -3.4401 -0.0010 8 6 4.8960 -4.4885 -0.0023 9 6 6.2555 -4.2401 -0.0041 10 6 6.7280 -2.9313 -0.0041 11 7 8.1013 -2.6851 -0.0065 12 6 8.5938 -1.6070 0.6353 13 8 7.8539 -0.9016 1.2965 14 6 10.0157 -1.2847 0.5372 15 1 10.6721 -1.9106 -0.0491 16 6 10.5275 -0.1635 1.2040 17 7 9.7336 0.5933 1.9136 18 14 12.3454 0.2480 1.0792 19 1 12.7035 0.4819 -0.3429 20 1 12.6311 1.4722 1.8698 21 1 13.1467 -0.8830 1.6119 22 6 5.8326 -1.8709 -0.0068 23 7 2.2042 -1.1125 -0.0001 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 1.8122 2.1345 0.0009 28 1 2.9365 -3.6386 0.0000 29 1 4.5349 -5.5063 -0.0018 30 1 6.9533 -5.0644 -0.0055 31 1 8.7017 -3.2898 -0.4697 32 1 10.0880 1.3692 2.3754 33 1 6.1968 -0.8542 -0.0109 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153725729.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:55 Heat of formation + Delta-G solvation = 5.096436 kcal Electronic energy + Delta-G solvation = -19219.753213 eV Core-core repulsion = 16142.935073 eV Total energy + Delta-G solvation = -3076.818140 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.08046 -40.47855 -38.71637 -35.46105 -34.57890 -33.55017 -31.52590 -30.55332 -28.56528 -28.18296 -25.97691 -24.04712 -22.68406 -21.76928 -20.01311 -19.55827 -18.90459 -17.81344 -17.53848 -16.94781 -16.24166 -15.99737 -15.94523 -15.65000 -15.04103 -14.65729 -14.48463 -14.16123 -14.06036 -13.85496 -13.33393 -13.25291 -13.17225 -12.76285 -12.75392 -12.51857 -12.41596 -12.13162 -12.08271 -11.21130 -10.92285 -10.81702 -10.59917 -10.25809 -9.92127 -9.20661 -8.77032 -8.36444 -6.94554 -0.79349 0.27347 0.51694 0.59409 0.76853 1.39849 1.42640 1.54737 1.80058 2.20673 2.38230 2.75560 2.92434 3.05981 3.58412 3.85261 4.07530 4.22447 4.24861 4.30112 4.40460 4.57077 4.72451 4.78763 4.82511 4.93141 5.00310 5.25308 5.31847 5.44101 5.48910 5.54046 5.78703 5.84793 6.16120 6.35223 6.63376 6.78088 7.33857 8.35402 8.56697 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.019945 B = 0.004508 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.556301 B = 6209.479058 C = 7485.914786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.047 3.953 3 C -0.251 4.251 4 S 0.056 5.944 5 C 0.111 3.889 6 C -0.032 4.032 7 C -0.109 4.109 8 C -0.087 4.087 9 C -0.143 4.143 10 C 0.159 3.841 11 N -0.692 5.692 12 C 0.528 3.472 13 O -0.605 6.605 14 C -0.565 4.565 15 H 0.094 0.906 16 C 0.031 3.969 17 N -0.812 5.812 18 Si 0.999 3.001 19 H -0.254 1.254 20 H -0.275 1.275 21 H -0.253 1.253 22 C -0.134 4.134 23 N -0.474 5.474 24 H 0.088 0.912 25 H 0.075 0.925 26 H 0.097 0.903 27 H 0.210 0.790 28 H 0.144 0.856 29 H 0.173 0.827 30 H 0.155 0.845 31 H 0.410 0.590 32 H 0.277 0.723 33 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.995 -4.658 -5.664 14.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.085 4.085 3 C -0.389 4.389 4 S 0.314 5.686 5 C -0.163 4.163 6 C -0.036 4.036 7 C -0.132 4.132 8 C -0.105 4.105 9 C -0.165 4.165 10 C 0.061 3.939 11 N -0.337 5.337 12 C 0.335 3.665 13 O -0.490 6.490 14 C -0.601 4.601 15 H 0.112 0.888 16 C -0.186 4.186 17 N -0.441 5.441 18 Si 0.818 3.182 19 H -0.178 1.178 20 H -0.200 1.200 21 H -0.176 1.176 22 C -0.158 4.158 23 N -0.189 5.189 24 H 0.107 0.893 25 H 0.094 0.906 26 H 0.116 0.884 27 H 0.227 0.773 28 H 0.162 0.838 29 H 0.190 0.810 30 H 0.173 0.827 31 H 0.246 0.754 32 H 0.087 0.913 33 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -11.776 -3.796 -5.081 13.376 hybrid contribution 0.456 0.525 -0.007 0.695 sum -11.320 -3.271 -5.089 12.835 Atomic orbital electron populations 1.20492 0.84072 1.04447 1.04092 1.20872 1.00175 0.85922 1.01540 1.27208 0.93418 1.05232 1.13035 1.85832 1.08967 1.04949 1.68894 1.25923 0.92491 0.94875 1.02983 1.17812 0.89527 0.91722 1.04570 1.21304 1.01129 0.89870 1.00897 1.21266 0.91280 1.00273 0.97667 1.21431 0.97434 0.94070 1.03558 1.18037 0.84675 0.93814 0.97332 1.43693 1.04383 1.29641 1.55980 1.18740 0.89993 0.79177 0.78618 1.90616 1.61260 1.52064 1.45104 1.21375 0.92439 1.12856 1.33432 0.88788 1.26982 1.05167 0.94371 0.92037 1.70146 1.38886 1.12383 1.22661 0.85041 0.75025 0.78438 0.79675 1.17798 1.20005 1.17640 1.21127 0.91961 0.99359 1.03329 1.66436 1.03553 1.31911 1.17018 0.89296 0.90591 0.88447 0.77297 0.83807 0.80998 0.82725 0.75360 0.91312 0.87970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.26 10.28 71.24 0.73 -0.53 16 2 C 0.05 1.31 6.69 41.62 0.28 1.59 16 3 C -0.25 -6.79 11.08 66.80 0.74 -6.05 16 4 S 0.06 2.06 22.39 -56.49 -1.26 0.80 16 5 C 0.11 4.22 7.35 87.48 0.64 4.87 16 6 C -0.03 -1.26 5.87 -20.11 -0.12 -1.38 16 7 C -0.11 -3.44 9.68 22.57 0.22 -3.23 16 8 C -0.09 -2.30 10.02 22.21 0.22 -2.08 16 9 C -0.14 -4.42 9.96 22.48 0.22 -4.20 16 10 C 0.16 6.63 6.27 38.27 0.24 6.87 16 11 N -0.69 -31.04 5.32 -307.66 -1.64 -32.68 16 12 C 0.53 29.92 7.47 86.29 0.64 30.57 16 13 O -0.60 -39.39 12.71 -4.50 -0.06 -39.44 16 14 C -0.57 -30.91 9.53 24.78 0.24 -30.67 16 15 H 0.09 4.52 7.85 -2.91 -0.02 4.50 16 16 C 0.03 1.67 5.50 85.33 0.47 2.14 16 17 N -0.81 -48.47 11.82 21.85 0.26 -48.21 16 18 Si 1.00 39.57 29.56 68.60 2.03 41.60 16 19 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 20 H -0.28 -10.61 7.11 99.48 0.71 -9.90 16 21 H -0.25 -9.36 7.11 99.48 0.71 -8.66 16 22 C -0.13 -6.09 8.20 22.67 0.19 -5.91 16 23 N -0.47 -15.98 10.11 -177.78 -1.80 -17.77 16 24 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 26 H 0.10 1.22 8.11 -2.39 -0.02 1.20 16 27 H 0.21 3.95 8.06 -2.91 -0.02 3.93 16 28 H 0.14 3.99 7.82 -2.91 -0.02 3.96 16 29 H 0.17 2.94 8.06 -2.91 -0.02 2.92 16 30 H 0.16 3.73 8.06 -2.91 -0.02 3.70 16 31 H 0.41 15.11 8.79 -92.71 -0.82 14.30 16 32 H 0.28 15.03 8.29 -92.71 -0.77 14.27 16 33 H 0.10 5.46 5.67 -2.91 -0.02 5.45 16 Total: -1.00 -76.82 308.12 2.59 -74.23 By element: Atomic # 1 Polarization: 29.14 SS G_CDS: 0.35 Total: 29.48 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: 4.72 Total: -8.00 kcal Atomic # 7 Polarization: -95.49 SS G_CDS: -3.18 Total: -98.66 kcal Atomic # 8 Polarization: -39.39 SS G_CDS: -0.06 Total: -39.44 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 2.03 Total: 41.60 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -1.26 Total: 0.80 kcal Total: -76.82 2.59 -74.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153725729.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.327 kcal (2) G-P(sol) polarization free energy of solvation -76.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds