Wall clock time and date at job start Tue Mar 31 2020 06:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50703 * 119.99868 * 2 1 4 4 N 1.46502 * 109.47257 * 125.00238 * 3 2 1 5 5 C 1.36610 * 127.15117 * 89.97353 * 4 3 2 6 6 S 1.76204 * 126.38353 * 359.97438 * 5 4 3 7 7 C 1.76198 * 99.99829 * 180.02562 * 6 5 4 8 8 H 1.07999 * 120.00293 * 359.97438 * 7 6 5 9 9 C 1.38675 * 119.99774 * 179.97438 * 7 6 5 10 10 N 1.31625 * 120.00130 * 359.72933 * 9 7 6 11 11 Si 1.86800 * 120.00307 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46783 * 90.00085 * 11 9 7 13 13 H 1.48495 * 109.47676 * 210.00334 * 11 9 7 14 14 H 1.48503 * 109.47002 * 330.00835 * 11 9 7 15 15 N 1.31657 * 107.23310 * 180.24196 * 5 4 3 16 16 N 1.28521 * 110.01702 * 359.59113 * 15 5 4 17 17 C 1.31497 * 109.93214 * 0.41850 * 16 15 5 18 18 C 1.47734 * 126.44513 * 179.74759 * 17 16 15 19 19 C 1.39604 * 119.75165 * 359.97438 * 18 17 16 20 20 C 1.38329 * 119.05109 * 180.02562 * 19 18 17 21 21 C 1.38844 * 118.52865 * 0.02562 * 20 19 18 22 22 C 1.38298 * 119.41636 * 359.97438 * 21 20 19 23 23 N 1.31713 * 120.91851 * 359.72972 * 22 21 20 24 24 H 1.08001 * 119.99536 * 180.02562 * 1 2 3 25 25 H 1.08000 * 120.00143 * 0.02562 * 1 2 3 26 26 H 1.08000 * 120.00143 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.47446 * 4.99392 * 3 2 1 28 28 H 1.09002 * 109.46963 * 244.99524 * 3 2 1 29 29 H 0.97000 * 120.00423 * 180.02562 * 10 9 7 30 30 H 1.08001 * 120.47511 * 0.02832 * 19 18 17 31 31 H 1.07995 * 120.73912 * 180.02562 * 20 19 18 32 32 H 1.08001 * 120.29251 * 180.02562 * 21 20 19 33 33 H 1.07997 * 119.53599 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1314 5 6 4.2900 0.9007 1.1441 6 16 5.1711 0.1982 -0.2105 7 6 6.7295 -0.0952 0.5575 8 1 6.8782 0.1664 1.5947 9 6 7.7652 -0.6621 -0.1700 10 7 7.5823 -0.9859 -1.4326 11 14 9.4176 -0.9726 0.6439 12 1 9.4266 -2.3311 1.2435 13 1 10.4963 -0.8726 -0.3718 14 1 9.6436 0.0392 1.7072 15 7 4.7563 1.1024 2.3587 16 7 3.8478 1.6342 3.0960 17 6 2.7438 1.7962 2.4003 18 6 1.4736 2.3696 2.8906 19 6 1.3732 2.7996 4.2150 20 6 0.1769 3.3337 4.6589 21 6 -0.8824 3.4210 3.7656 22 6 -0.7143 2.9759 2.4670 23 7 0.4368 2.4765 2.0665 24 1 -0.5399 -0.9354 0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3586 2.1317 0.0895 28 1 2.6213 1.4026 -0.9314 29 1 8.3066 -1.3827 -1.9414 30 1 2.2175 2.7166 4.8833 31 1 0.0692 3.6752 5.6778 32 1 -1.8291 3.8335 4.0818 33 1 -1.5371 3.0425 1.7707 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159614469.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:29 Heat of formation + Delta-G solvation = 131.135635 kcal Electronic energy + Delta-G solvation = -19482.105901 eV Core-core repulsion = 16443.045982 eV Total energy + Delta-G solvation = -3039.059919 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.074 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.01805 -39.93260 -35.74236 -32.76604 -32.68841 -32.28712 -32.12518 -29.04652 -26.50138 -25.71232 -24.00866 -23.69346 -21.68372 -20.78795 -19.92397 -18.01279 -17.41181 -16.49346 -16.04486 -15.68609 -15.53951 -15.14569 -14.93853 -14.38761 -13.95986 -13.86788 -13.36674 -13.24449 -12.99026 -12.23889 -11.83715 -11.48073 -11.30932 -11.15313 -11.08627 -10.75494 -10.23382 -10.22012 -9.94013 -9.90432 -9.67427 -9.54419 -9.36235 -9.25086 -8.87936 -8.48877 -6.77198 -6.48202 -4.22126 0.71379 1.17315 2.13553 2.45779 2.58264 3.19514 3.23679 3.32104 3.40988 3.41770 3.95976 3.97136 4.00843 4.64810 4.70606 4.92163 4.94628 4.95994 5.01934 5.03315 5.17566 5.33347 5.44418 5.65887 5.76410 5.81893 5.96054 6.04927 6.13153 6.37426 6.54128 6.64421 6.70098 6.84649 7.34790 7.56192 7.80778 8.36383 9.03890 9.35258 10.59990 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.026956 B = 0.004447 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.467800 B = 6295.465730 C = 7181.147589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.166 4.166 3 C 0.140 3.860 4 N -0.455 5.455 5 C 0.176 3.824 6 S 0.146 5.854 7 C -0.535 4.535 8 H 0.106 0.894 9 C 0.076 3.924 10 N -0.877 5.877 11 Si 0.932 3.068 12 H -0.274 1.274 13 H -0.281 1.281 14 H -0.265 1.265 15 N -0.302 5.302 16 N -0.260 5.260 17 C 0.169 3.831 18 C 0.226 3.774 19 C -0.136 4.136 20 C -0.072 4.072 21 C -0.180 4.180 22 C 0.105 3.895 23 N -0.481 5.481 24 H 0.096 0.904 25 H 0.102 0.898 26 H 0.114 0.886 27 H 0.114 0.886 28 H 0.097 0.903 29 H 0.274 0.726 30 H 0.147 0.853 31 H 0.137 0.863 32 H 0.134 0.866 33 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.462 6.557 4.678 19.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.185 4.185 3 C 0.017 3.983 4 N -0.150 5.150 5 C -0.194 4.194 6 S 0.379 5.621 7 C -0.684 4.684 8 H 0.124 0.876 9 C -0.133 4.133 10 N -0.513 5.513 11 Si 0.758 3.242 12 H -0.199 1.199 13 H -0.207 1.207 14 H -0.190 1.190 15 N -0.149 5.149 16 N -0.105 5.105 17 C -0.097 4.097 18 C 0.088 3.912 19 C -0.159 4.159 20 C -0.097 4.097 21 C -0.201 4.201 22 C -0.054 4.054 23 N -0.192 5.192 24 H 0.114 0.886 25 H 0.120 0.880 26 H 0.132 0.868 27 H 0.132 0.868 28 H 0.116 0.884 29 H 0.084 0.916 30 H 0.165 0.835 31 H 0.155 0.845 32 H 0.152 0.848 33 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -16.571 5.962 3.603 17.976 hybrid contribution 0.314 0.218 1.412 1.463 sum -16.257 6.180 5.015 18.101 Atomic orbital electron populations 1.23809 0.95508 1.01788 0.99129 1.23083 0.96279 0.98215 1.00911 1.21037 0.91739 0.98123 0.87387 1.46236 1.10398 1.47861 1.10496 1.28493 0.85609 1.02215 1.03075 1.83471 1.08438 1.67783 1.02373 1.23241 0.95269 1.47791 1.02063 0.87622 1.25068 0.99634 0.93785 0.94799 1.69940 1.33974 1.39627 1.07710 0.85920 0.80079 0.79237 0.79010 1.19910 1.20665 1.18958 1.74847 1.21509 1.18947 0.99620 1.74202 0.96688 1.13694 1.25885 1.22047 0.95673 1.08361 0.83668 1.18151 0.88582 0.94454 0.90020 1.22033 0.99291 0.98712 0.95823 1.21526 0.92245 0.95879 1.00086 1.22159 1.00156 1.02604 0.95202 1.22633 0.94249 0.93933 0.94543 1.67582 0.99770 1.14839 1.37034 0.88562 0.87981 0.86836 0.86779 0.88447 0.91587 0.83548 0.84474 0.84823 0.82556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 14.32 29.01 0.42 -1.54 16 2 C -0.17 -2.44 9.85 -36.02 -0.35 -2.79 16 3 C 0.14 2.23 5.93 -5.19 -0.03 2.20 16 4 N -0.45 -9.13 2.81 -115.32 -0.32 -9.46 16 5 C 0.18 4.19 8.06 -87.96 -0.71 3.48 16 6 S 0.15 3.66 21.38 -107.50 -2.30 1.36 16 7 C -0.53 -15.01 9.37 30.89 0.29 -14.72 16 8 H 0.11 3.06 6.92 -52.49 -0.36 2.70 16 9 C 0.08 2.08 5.49 -17.48 -0.10 1.98 16 10 N -0.88 -24.42 13.22 55.48 0.73 -23.69 16 11 Si 0.93 21.29 29.55 -169.99 -5.02 16.27 16 12 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 13 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 14 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 15 N -0.30 -7.68 11.03 30.76 0.34 -7.34 16 16 N -0.26 -5.92 11.87 32.57 0.39 -5.54 16 17 C 0.17 3.36 7.82 -153.78 -1.20 2.16 16 18 C 0.23 3.58 6.75 -83.02 -0.56 3.02 16 19 C -0.14 -1.81 9.74 -39.04 -0.38 -2.19 16 20 C -0.07 -0.69 10.16 -39.32 -0.40 -1.09 16 21 C -0.18 -1.54 10.11 -39.34 -0.40 -1.93 16 22 C 0.10 1.04 11.17 -17.58 -0.20 0.84 16 23 N -0.48 -6.51 7.82 -9.85 -0.08 -6.59 16 24 H 0.10 1.01 8.06 -52.49 -0.42 0.59 16 25 H 0.10 1.09 7.84 -52.49 -0.41 0.68 16 26 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 27 H 0.11 1.65 5.91 -51.93 -0.31 1.34 16 28 H 0.10 1.53 7.86 -51.93 -0.41 1.12 16 29 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.15 1.95 7.86 -52.49 -0.41 1.54 16 31 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 32 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 33 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 312.75 15.07 4.71 4.71 Total: -1.00 -32.21 312.75 -8.32 -40.53 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -3.15 Total: 0.31 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: -3.62 Total: -10.58 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: 1.06 Total: -52.62 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: 3.66 SS G_CDS: -2.30 Total: 1.36 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.21 -8.32 -40.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159614469.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.669 kcal (2) G-P(sol) polarization free energy of solvation -32.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds