Wall clock time and date at job start Tue Mar 31 2020 06:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50703 * 119.99868 * 2 1 4 4 N 1.46502 * 109.47257 * 125.00238 * 3 2 1 5 5 C 1.36610 * 127.15117 * 89.97353 * 4 3 2 6 6 S 1.76204 * 126.38353 * 359.97438 * 5 4 3 7 7 C 1.76198 * 99.99829 * 180.02562 * 6 5 4 8 8 H 1.07999 * 120.00293 * 359.97438 * 7 6 5 9 9 C 1.38675 * 119.99774 * 179.97438 * 7 6 5 10 10 N 1.31625 * 120.00130 * 359.72933 * 9 7 6 11 11 Si 1.86800 * 120.00307 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46783 * 90.00085 * 11 9 7 13 13 H 1.48495 * 109.47676 * 210.00334 * 11 9 7 14 14 H 1.48503 * 109.47002 * 330.00835 * 11 9 7 15 15 N 1.31657 * 107.23310 * 180.24196 * 5 4 3 16 16 N 1.28521 * 110.01702 * 359.59113 * 15 5 4 17 17 C 1.31497 * 109.93214 * 0.41850 * 16 15 5 18 18 C 1.47734 * 126.44513 * 179.74759 * 17 16 15 19 19 C 1.39604 * 119.75165 * 359.97438 * 18 17 16 20 20 C 1.38329 * 119.05109 * 180.02562 * 19 18 17 21 21 C 1.38844 * 118.52865 * 0.02562 * 20 19 18 22 22 C 1.38298 * 119.41636 * 359.97438 * 21 20 19 23 23 N 1.31713 * 120.91851 * 359.72972 * 22 21 20 24 24 H 1.08001 * 119.99536 * 180.02562 * 1 2 3 25 25 H 1.08000 * 120.00143 * 0.02562 * 1 2 3 26 26 H 1.08000 * 120.00143 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.47446 * 4.99392 * 3 2 1 28 28 H 1.09002 * 109.46963 * 244.99524 * 3 2 1 29 29 H 0.97000 * 120.00423 * 180.02562 * 10 9 7 30 30 H 1.08001 * 120.47511 * 0.02832 * 19 18 17 31 31 H 1.07995 * 120.73912 * 180.02562 * 20 19 18 32 32 H 1.08001 * 120.29251 * 180.02562 * 21 20 19 33 33 H 1.07997 * 119.53599 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1314 5 6 4.2900 0.9007 1.1441 6 16 5.1711 0.1982 -0.2105 7 6 6.7295 -0.0952 0.5575 8 1 6.8782 0.1664 1.5947 9 6 7.7652 -0.6621 -0.1700 10 7 7.5823 -0.9859 -1.4326 11 14 9.4176 -0.9726 0.6439 12 1 9.4266 -2.3311 1.2435 13 1 10.4963 -0.8726 -0.3718 14 1 9.6436 0.0392 1.7072 15 7 4.7563 1.1024 2.3587 16 7 3.8478 1.6342 3.0960 17 6 2.7438 1.7962 2.4003 18 6 1.4736 2.3696 2.8906 19 6 1.3732 2.7996 4.2150 20 6 0.1769 3.3337 4.6589 21 6 -0.8824 3.4210 3.7656 22 6 -0.7143 2.9759 2.4670 23 7 0.4368 2.4765 2.0665 24 1 -0.5399 -0.9354 0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3586 2.1317 0.0895 28 1 2.6213 1.4026 -0.9314 29 1 8.3066 -1.3827 -1.9414 30 1 2.2175 2.7166 4.8833 31 1 0.0692 3.6752 5.6778 32 1 -1.8291 3.8335 4.0818 33 1 -1.5371 3.0425 1.7707 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159614469.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:28 Heat of formation + Delta-G solvation = 112.143459 kcal Electronic energy + Delta-G solvation = -19482.929463 eV Core-core repulsion = 16443.045982 eV Total energy + Delta-G solvation = -3039.883482 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.074 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.66477 -40.87340 -37.10306 -34.76514 -33.85254 -33.43264 -33.30556 -30.46795 -27.91467 -27.70354 -25.17602 -24.70127 -23.21209 -22.13826 -21.11571 -19.89859 -18.71558 -17.57329 -17.29408 -17.20555 -16.97661 -16.63992 -16.51569 -15.69532 -15.10961 -14.87121 -14.78798 -14.53056 -14.04619 -13.50702 -13.34174 -13.03506 -13.00631 -12.74359 -12.53131 -12.44076 -12.03604 -11.72343 -11.66447 -11.17350 -11.06552 -10.87614 -10.83679 -10.53081 -10.43009 -9.83613 -8.68533 -8.53607 -6.32464 -0.34327 0.34349 0.63112 0.94119 1.19041 1.36253 1.39472 1.52186 1.81239 1.94394 2.12516 2.81045 2.87138 2.92096 3.00305 3.63522 3.78949 3.89942 3.98582 4.11961 4.16321 4.22014 4.37644 4.51761 4.61889 4.78512 4.87558 4.93963 5.03820 5.20367 5.26905 5.45204 5.63480 5.65587 5.75754 5.89326 6.20304 6.87253 6.93900 7.64261 8.55953 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.026956 B = 0.004447 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.467800 B = 6295.465730 C = 7181.147589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.202 4.202 3 C 0.138 3.862 4 N -0.449 5.449 5 C 0.158 3.842 6 S 0.127 5.873 7 C -0.563 4.563 8 H 0.085 0.915 9 C 0.034 3.966 10 N -0.903 5.903 11 Si 0.995 3.005 12 H -0.265 1.265 13 H -0.263 1.263 14 H -0.271 1.271 15 N -0.342 5.342 16 N -0.303 5.303 17 C 0.198 3.802 18 C 0.178 3.822 19 C -0.143 4.143 20 C -0.067 4.067 21 C -0.149 4.149 22 C 0.100 3.900 23 N -0.491 5.491 24 H 0.116 0.884 25 H 0.124 0.876 26 H 0.090 0.910 27 H 0.135 0.865 28 H 0.092 0.908 29 H 0.281 0.719 30 H 0.133 0.867 31 H 0.173 0.827 32 H 0.181 0.819 33 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.348 7.876 5.601 23.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.221 4.221 3 C 0.017 3.983 4 N -0.142 5.142 5 C -0.215 4.215 6 S 0.359 5.641 7 C -0.711 4.711 8 H 0.103 0.897 9 C -0.172 4.172 10 N -0.539 5.539 11 Si 0.817 3.183 12 H -0.190 1.190 13 H -0.188 1.188 14 H -0.196 1.196 15 N -0.188 5.188 16 N -0.145 5.145 17 C -0.071 4.071 18 C 0.041 3.959 19 C -0.165 4.165 20 C -0.093 4.093 21 C -0.169 4.169 22 C -0.059 4.059 23 N -0.202 5.202 24 H 0.134 0.866 25 H 0.142 0.858 26 H 0.108 0.892 27 H 0.152 0.848 28 H 0.110 0.890 29 H 0.091 0.909 30 H 0.151 0.849 31 H 0.190 0.810 32 H 0.198 0.802 33 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -20.485 7.291 4.537 22.212 hybrid contribution 1.031 -0.008 1.266 1.632 sum -19.454 7.283 5.803 21.568 Atomic orbital electron populations 1.24095 0.94186 1.03684 0.94185 1.22849 0.97289 0.96501 1.05444 1.21319 0.91345 0.99790 0.85825 1.46573 1.09610 1.46422 1.11641 1.28150 0.87216 1.03745 1.02363 1.83095 1.07780 1.69860 1.03414 1.23342 0.97201 1.48954 1.01621 0.89674 1.25919 1.02832 0.93128 0.95338 1.69997 1.35250 1.39962 1.08671 0.84996 0.76058 0.79066 0.78200 1.19013 1.18782 1.19568 1.74702 1.23432 1.20006 1.00657 1.74100 0.97696 1.16277 1.26455 1.22973 0.96483 1.04732 0.82874 1.17997 0.88027 0.98282 0.91558 1.22098 1.00736 0.99026 0.94652 1.21958 0.90806 0.94489 1.02048 1.22738 1.01197 0.99049 0.93944 1.23424 0.93630 0.92618 0.96249 1.67467 1.00317 1.15316 1.37132 0.86595 0.85820 0.89181 0.84769 0.88996 0.90921 0.84898 0.80994 0.80175 0.78552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.61 14.32 67.78 0.97 -1.64 16 2 C -0.20 -5.90 9.85 25.65 0.25 -5.65 16 3 C 0.14 4.47 5.93 85.63 0.51 4.98 16 4 N -0.45 -18.82 2.81 -518.76 -1.46 -20.28 16 5 C 0.16 8.04 8.06 179.42 1.45 9.48 16 6 S 0.13 6.80 21.38 -56.49 -1.21 5.59 16 7 C -0.56 -33.44 9.37 67.92 0.64 -32.80 16 8 H 0.09 5.29 6.92 -2.91 -0.02 5.27 16 9 C 0.03 1.93 5.49 84.83 0.47 2.40 16 10 N -0.90 -51.71 13.22 21.62 0.29 -51.42 16 11 Si 1.00 44.82 29.55 68.60 2.03 46.85 16 12 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 13 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 14 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 15 N -0.34 -18.65 11.03 -56.61 -0.62 -19.27 16 16 N -0.30 -14.62 11.87 -50.86 -0.60 -15.22 16 17 C 0.20 8.15 7.82 136.16 1.06 9.21 16 18 C 0.18 5.47 6.75 41.83 0.28 5.75 16 19 C -0.14 -3.56 9.74 22.62 0.22 -3.34 16 20 C -0.07 -1.00 10.16 22.44 0.23 -0.77 16 21 C -0.15 -1.59 10.11 22.43 0.23 -1.37 16 22 C 0.10 1.43 11.17 84.72 0.95 2.37 16 23 N -0.49 -11.83 7.82 -185.07 -1.45 -13.27 16 24 H 0.12 2.02 8.06 -2.91 -0.02 2.00 16 25 H 0.12 2.08 7.84 -2.91 -0.02 2.06 16 26 H 0.09 3.05 8.06 -2.91 -0.02 3.03 16 27 H 0.13 3.73 5.91 -2.39 -0.01 3.71 16 28 H 0.09 3.02 7.86 -2.39 -0.02 3.00 16 29 H 0.28 14.82 8.31 -92.71 -0.77 14.05 16 30 H 0.13 3.59 7.86 -2.91 -0.02 3.57 16 31 H 0.17 1.35 8.06 -2.91 -0.02 1.33 16 32 H 0.18 0.40 8.06 -2.91 -0.02 0.37 16 33 H 0.20 1.21 8.06 -2.91 -0.02 1.18 16 Total: -1.00 -76.89 312.75 5.35 -71.54 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: 1.13 Total: 6.86 kcal Atomic # 6 Polarization: -18.61 SS G_CDS: 7.25 Total: -11.37 kcal Atomic # 7 Polarization: -115.62 SS G_CDS: -3.85 Total: -119.47 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Atomic # 16 Polarization: 6.80 SS G_CDS: -1.21 Total: 5.59 kcal Total: -76.89 5.35 -71.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159614469.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.679 kcal (2) G-P(sol) polarization free energy of solvation -76.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds