Wall clock time and date at job start Tue Mar 31 2020 05:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00026 * 2 1 4 4 H 1.48506 * 109.47172 * 240.00055 * 3 2 1 5 5 H 1.48496 * 109.47084 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47163 * 120.00098 * 3 2 1 7 7 C 1.37885 * 119.99844 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99600 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99868 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46841 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47421 * 180.02562 * 10 9 7 12 12 S 1.81396 * 109.47581 * 180.02562 * 11 10 9 13 13 O 1.42101 * 109.47006 * 63.60979 * 12 11 10 14 14 C 1.81402 * 103.00116 * 179.97438 * 12 11 10 15 15 C 1.50698 * 109.47030 * 180.02562 * 14 12 11 16 16 C 1.38256 * 119.96625 * 89.99555 * 15 14 12 17 17 C 1.38219 * 120.06906 * 179.74221 * 16 15 14 18 18 C 1.38403 * 120.00161 * 0.26315 * 17 16 15 19 19 F 1.35095 * 120.03964 * 179.97438 * 18 17 16 20 20 C 1.38651 * 119.92906 * 359.97438 * 18 17 16 21 21 F 1.35106 * 120.03599 * 180.02562 * 20 18 17 22 22 C 1.38212 * 119.96163 * 270.25402 * 15 14 12 23 23 H 0.96997 * 119.99877 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46784 * 60.00750 * 9 7 2 25 25 H 1.08992 * 109.47382 * 300.00191 * 9 7 2 26 26 H 1.09001 * 109.47254 * 60.00033 * 10 9 7 27 27 H 1.09005 * 109.47304 * 300.00409 * 10 9 7 28 28 H 1.09001 * 109.47155 * 59.99635 * 11 10 9 29 29 H 1.09005 * 109.46940 * 300.00295 * 11 10 9 30 30 H 1.08997 * 109.47209 * 59.99691 * 14 12 11 31 31 H 1.09001 * 109.46613 * 299.99821 * 14 12 11 32 32 H 1.08002 * 119.96773 * 0.02832 * 16 15 14 33 33 H 1.08002 * 119.99939 * 180.23514 * 17 16 15 34 34 H 1.07995 * 120.00523 * 0.02562 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9872 -0.0012 12 16 2.6591 -6.3659 -0.0004 13 8 3.4186 -6.3391 1.2003 14 6 1.5808 -7.8247 -0.0005 15 6 2.4247 -9.0732 0.0007 16 6 2.8107 -9.6447 1.1990 17 6 3.5803 -10.7928 1.2027 18 6 3.9699 -11.3685 0.0059 19 9 4.7226 -12.4903 0.0085 20 6 3.5870 -10.7926 -1.1958 21 9 3.9658 -11.3531 -2.3653 22 6 2.8166 -9.6426 -1.1961 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8904 25 1 0.6247 -2.5571 0.8896 26 1 2.8719 -3.6044 0.8894 27 1 2.8720 -3.6044 -0.8905 28 1 0.8539 -5.0446 -0.8914 29 1 0.8533 -5.0451 0.8886 30 1 0.9519 -7.8116 -0.8907 31 1 0.9513 -7.8112 0.8893 32 1 2.5066 -9.1961 2.1333 33 1 3.8779 -11.2404 2.1394 34 1 2.5184 -9.1927 -2.1315 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172839168.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:16 Heat of formation + Delta-G solvation = -121.708610 kcal Electronic energy + Delta-G solvation = -19189.790996 eV Core-core repulsion = 15656.784990 eV Total energy + Delta-G solvation = -3533.006006 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.074 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.73220 -48.80860 -39.41718 -35.58920 -34.48631 -32.85697 -32.06899 -31.13318 -27.76689 -27.11026 -23.63379 -23.50665 -22.16391 -20.33432 -18.25752 -17.59829 -17.41668 -17.16725 -16.60138 -16.34740 -15.35378 -15.21032 -15.10445 -14.94587 -14.76140 -14.47343 -14.36535 -13.97993 -13.74942 -13.00306 -12.60993 -12.41822 -12.26239 -12.06664 -11.96463 -11.60242 -11.45928 -10.89266 -10.84174 -10.75597 -10.32461 -9.84475 -9.55320 -9.35375 -9.18652 -8.78777 -8.38947 -8.06552 -6.04136 -4.06997 0.46213 0.64167 1.60009 2.68079 3.06523 3.31667 3.35900 3.38776 3.44490 3.79263 4.02257 4.18143 4.25241 4.43200 4.62285 4.73778 4.95937 5.24488 5.31456 5.38986 5.41415 5.49492 5.52259 5.61951 5.67557 5.97965 6.12094 6.39499 6.44431 6.63395 6.98651 7.60901 7.73090 7.94837 8.36455 8.99741 9.57465 11.07081 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.044289 B = 0.002581 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.063973 B =10846.749052 C =10917.016128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.027 3.973 10 C -0.094 4.094 11 C -0.433 4.433 12 S 1.234 4.766 13 O -0.839 6.839 14 C -0.421 4.421 15 C -0.038 4.038 16 C -0.093 4.093 17 C -0.119 4.119 18 C 0.060 3.940 19 F -0.130 7.130 20 C 0.072 3.928 21 F -0.128 7.128 22 C -0.124 4.124 23 H 0.261 0.739 24 H 0.019 0.981 25 H 0.014 0.986 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.115 0.885 29 H 0.082 0.918 30 H 0.132 0.868 31 H 0.101 0.899 32 H 0.139 0.861 33 H 0.147 0.853 34 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.888 -22.633 -3.700 23.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.074 0.926 9 C -0.011 4.011 10 C -0.133 4.133 11 C -0.572 4.572 12 S 1.434 4.566 13 O -0.834 6.834 14 C -0.554 4.554 15 C -0.039 4.039 16 C -0.112 4.112 17 C -0.138 4.138 18 C 0.039 3.961 19 F -0.109 7.109 20 C 0.052 3.948 21 F -0.106 7.106 22 C -0.144 4.144 23 H 0.071 0.929 24 H 0.038 0.962 25 H 0.033 0.967 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.133 0.867 29 H 0.101 0.899 30 H 0.150 0.850 31 H 0.119 0.881 32 H 0.157 0.843 33 H 0.164 0.836 34 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 4.756 -22.570 -3.718 23.363 hybrid contribution -0.880 0.602 1.671 1.982 sum 3.876 -21.968 -2.046 22.401 Atomic orbital electron populations 1.69951 1.06094 1.26804 1.50725 1.25029 0.94867 0.99323 0.95212 0.86635 0.79582 0.82963 0.78718 1.20094 1.21277 1.20226 1.21238 0.93131 0.91033 1.50856 0.92567 1.19088 0.93777 0.90879 0.97358 1.21329 0.99000 0.91806 1.01176 1.27678 1.11507 1.10670 1.07314 1.70816 0.87887 0.85400 1.12510 1.93123 1.55817 1.83701 1.50765 1.26881 1.09959 1.09597 1.08920 1.19053 0.97168 0.95302 0.92403 1.21078 0.96978 0.94474 0.98714 1.21069 0.99153 0.96752 0.96833 1.17701 0.98041 0.86796 0.93573 1.91526 1.73577 1.48511 1.97276 1.17605 1.01412 0.95417 0.80370 1.91542 1.89603 1.84378 1.45086 1.21012 0.98876 0.94554 0.99979 0.92899 0.96222 0.96749 0.92771 0.92050 0.86671 0.89943 0.85015 0.88064 0.84310 0.83554 0.82660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.67 13.29 55.43 0.74 -25.93 16 2 C 0.06 1.62 5.46 -17.81 -0.10 1.52 16 3 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.52 -14.69 9.11 -34.44 -0.31 -15.01 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.03 0.69 4.97 -27.88 -0.14 0.55 16 10 C -0.09 -1.84 5.16 -26.73 -0.14 -1.97 16 11 C -0.43 -6.22 5.92 37.16 0.22 -6.00 16 12 S 1.23 13.96 13.14 -107.50 -1.41 12.55 16 13 O -0.84 -14.74 18.14 -35.23 -0.64 -15.37 16 14 C -0.42 -3.51 6.05 36.00 0.22 -3.30 16 15 C -0.04 -0.34 5.14 -104.63 -0.54 -0.88 16 16 C -0.09 -0.90 9.70 -39.58 -0.38 -1.28 16 17 C -0.12 -1.08 10.02 -39.53 -0.40 -1.48 16 18 C 0.06 0.61 7.31 -39.37 -0.29 0.32 16 19 F -0.13 -1.44 17.18 2.25 0.04 -1.40 16 20 C 0.07 0.71 7.31 -39.36 -0.29 0.42 16 21 F -0.13 -1.35 17.18 2.25 0.04 -1.31 16 22 C -0.12 -1.01 9.68 -39.52 -0.38 -1.39 16 23 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 24 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 27 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.11 1.35 8.14 -51.92 -0.42 0.93 16 29 H 0.08 1.27 8.14 -51.92 -0.42 0.85 16 30 H 0.13 0.69 8.09 -51.93 -0.42 0.27 16 31 H 0.10 0.89 8.08 -51.92 -0.42 0.47 16 32 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 33 H 0.15 1.02 8.06 -52.49 -0.42 0.59 16 34 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16 LS Contribution 320.86 15.07 4.84 4.84 Total: -1.00 -35.32 320.86 -8.13 -43.46 By element: Atomic # 1 Polarization: -0.60 SS G_CDS: -4.19 Total: -4.79 kcal Atomic # 6 Polarization: -25.97 SS G_CDS: -2.53 Total: -28.49 kcal Atomic # 7 Polarization: -26.67 SS G_CDS: 0.74 Total: -25.93 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: -0.64 Total: -15.37 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.08 Total: -2.71 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 13.96 SS G_CDS: -1.41 Total: 12.55 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -35.32 -8.13 -43.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172839168.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.250 kcal (2) G-P(sol) polarization free energy of solvation -35.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds