Wall clock time and date at job start Tue Mar 31 2020 05:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00026 * 2 1 4 4 H 1.48506 * 109.47172 * 240.00055 * 3 2 1 5 5 H 1.48496 * 109.47084 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47163 * 120.00098 * 3 2 1 7 7 C 1.37885 * 119.99844 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99600 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99868 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46841 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47421 * 180.02562 * 10 9 7 12 12 S 1.81396 * 109.47581 * 180.02562 * 11 10 9 13 13 O 1.42101 * 109.47006 * 63.60979 * 12 11 10 14 14 C 1.81402 * 103.00116 * 179.97438 * 12 11 10 15 15 C 1.50698 * 109.47030 * 180.02562 * 14 12 11 16 16 C 1.38256 * 119.96625 * 89.99555 * 15 14 12 17 17 C 1.38219 * 120.06906 * 179.74221 * 16 15 14 18 18 C 1.38403 * 120.00161 * 0.26315 * 17 16 15 19 19 F 1.35095 * 120.03964 * 179.97438 * 18 17 16 20 20 C 1.38651 * 119.92906 * 359.97438 * 18 17 16 21 21 F 1.35106 * 120.03599 * 180.02562 * 20 18 17 22 22 C 1.38212 * 119.96163 * 270.25402 * 15 14 12 23 23 H 0.96997 * 119.99877 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46784 * 60.00750 * 9 7 2 25 25 H 1.08992 * 109.47382 * 300.00191 * 9 7 2 26 26 H 1.09001 * 109.47254 * 60.00033 * 10 9 7 27 27 H 1.09005 * 109.47304 * 300.00409 * 10 9 7 28 28 H 1.09001 * 109.47155 * 59.99635 * 11 10 9 29 29 H 1.09005 * 109.46940 * 300.00295 * 11 10 9 30 30 H 1.08997 * 109.47209 * 59.99691 * 14 12 11 31 31 H 1.09001 * 109.46613 * 299.99821 * 14 12 11 32 32 H 1.08002 * 119.96773 * 0.02832 * 16 15 14 33 33 H 1.08002 * 119.99939 * 180.23514 * 17 16 15 34 34 H 1.07995 * 120.00523 * 0.02562 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9872 -0.0012 12 16 2.6591 -6.3659 -0.0004 13 8 3.4186 -6.3391 1.2003 14 6 1.5808 -7.8247 -0.0005 15 6 2.4247 -9.0732 0.0007 16 6 2.8107 -9.6447 1.1990 17 6 3.5803 -10.7928 1.2027 18 6 3.9699 -11.3685 0.0059 19 9 4.7226 -12.4903 0.0085 20 6 3.5870 -10.7926 -1.1958 21 9 3.9658 -11.3531 -2.3653 22 6 2.8166 -9.6426 -1.1961 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8904 25 1 0.6247 -2.5571 0.8896 26 1 2.8719 -3.6044 0.8894 27 1 2.8720 -3.6044 -0.8905 28 1 0.8539 -5.0446 -0.8914 29 1 0.8533 -5.0451 0.8886 30 1 0.9519 -7.8116 -0.8907 31 1 0.9513 -7.8112 0.8893 32 1 2.5066 -9.1961 2.1333 33 1 3.8779 -11.2404 2.1394 34 1 2.5184 -9.1927 -2.1315 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172839168.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:16 Heat of formation + Delta-G solvation = -144.171125 kcal Electronic energy + Delta-G solvation = -19190.765044 eV Core-core repulsion = 15656.784990 eV Total energy + Delta-G solvation = -3533.980054 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.074 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.51115 -49.59300 -40.11598 -36.79051 -36.27725 -34.00273 -33.57869 -31.82250 -29.43945 -27.99547 -25.35329 -24.29316 -23.01444 -21.96354 -19.03752 -18.67845 -18.30786 -18.15391 -17.94597 -17.36816 -16.66836 -16.30864 -16.11156 -16.00568 -15.91954 -15.52489 -15.22240 -14.86131 -14.74410 -14.28872 -14.00774 -13.87686 -13.33602 -13.19823 -12.99699 -12.84104 -12.66301 -12.50485 -12.42307 -12.27536 -11.82994 -11.56609 -11.30471 -10.92893 -10.55033 -10.08256 -9.73708 -9.05367 -8.20541 -6.31656 -0.31114 -0.03731 0.69198 1.40556 1.43240 1.51161 1.74763 2.35494 2.41216 2.73046 2.87590 3.12534 3.27318 3.46758 3.56403 3.93767 4.10131 4.10445 4.23533 4.32717 4.57578 4.66381 4.75191 4.86798 4.89916 4.96059 4.96559 5.20008 5.22463 5.28809 5.51471 5.69459 5.72451 5.85159 6.24368 6.85449 7.37734 8.90700 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.044289 B = 0.002581 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.063973 B =10846.749052 C =10917.016128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.962 3.038 4 H -0.261 1.261 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.549 4.549 8 H 0.060 0.940 9 C 0.027 3.973 10 C -0.090 4.090 11 C -0.439 4.439 12 S 1.293 4.707 13 O -0.905 6.905 14 C -0.408 4.408 15 C -0.048 4.048 16 C -0.105 4.105 17 C -0.121 4.121 18 C 0.044 3.956 19 F -0.140 7.140 20 C 0.059 3.941 21 F -0.134 7.134 22 C -0.110 4.110 23 H 0.264 0.736 24 H 0.009 0.991 25 H -0.020 1.020 26 H 0.030 0.970 27 H 0.084 0.916 28 H 0.147 0.853 29 H 0.065 0.935 30 H 0.177 0.823 31 H 0.101 0.899 32 H 0.138 0.862 33 H 0.162 0.838 34 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.060 -23.131 -5.087 24.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.787 3.213 4 H -0.186 1.186 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.587 4.587 8 H 0.078 0.922 9 C -0.011 4.011 10 C -0.129 4.129 11 C -0.576 4.576 12 S 1.495 4.505 13 O -0.901 6.901 14 C -0.544 4.544 15 C -0.050 4.050 16 C -0.125 4.125 17 C -0.139 4.139 18 C 0.024 3.976 19 F -0.118 7.118 20 C 0.039 3.961 21 F -0.112 7.112 22 C -0.129 4.129 23 H 0.073 0.927 24 H 0.028 0.972 25 H -0.001 1.001 26 H 0.049 0.951 27 H 0.103 0.897 28 H 0.165 0.835 29 H 0.084 0.916 30 H 0.195 0.805 31 H 0.120 0.880 32 H 0.156 0.844 33 H 0.180 0.820 34 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 4.945 -23.029 -5.102 24.101 hybrid contribution -0.983 0.609 2.105 2.402 sum 3.962 -22.421 -2.997 22.964 Atomic orbital electron populations 1.70077 1.07727 1.27862 1.51652 1.25967 0.95788 1.03308 0.94706 0.85539 0.78345 0.78193 0.79238 1.18562 1.20775 1.19781 1.21751 0.93670 0.92636 1.50651 0.92212 1.19021 0.94341 0.92649 0.95112 1.21122 0.98014 0.92598 1.01160 1.27696 1.12048 1.09679 1.08163 1.70085 0.86078 0.84536 1.09808 1.93013 1.58925 1.85025 1.53095 1.26760 1.09434 1.06818 1.11352 1.19168 0.97582 0.95632 0.92573 1.21272 0.97165 0.94763 0.99269 1.21220 0.98838 0.96613 0.97244 1.17969 0.98447 0.86848 0.94351 1.91498 1.73923 1.49069 1.97359 1.17827 1.02122 0.96171 0.79978 1.91527 1.89780 1.84602 1.45331 1.21347 0.97128 0.93381 1.01081 0.92731 0.97235 1.00124 0.95127 0.89732 0.83452 0.91570 0.80525 0.88020 0.84368 0.82044 0.79024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.32 13.29 21.45 0.28 -56.03 16 2 C 0.00 0.01 5.46 84.66 0.46 0.47 16 3 Si 0.96 44.00 29.54 68.60 2.03 46.03 16 4 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 6 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.55 -31.15 9.11 25.60 0.23 -30.92 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 9 C 0.03 1.39 4.97 29.85 0.15 1.54 16 10 C -0.09 -3.52 5.16 30.59 0.16 -3.36 16 11 C -0.44 -12.01 5.92 71.98 0.43 -11.58 16 12 S 1.29 26.46 13.14 -56.49 -0.74 25.72 16 13 O -0.90 -31.34 18.14 -148.98 -2.70 -34.04 16 14 C -0.41 -5.31 6.05 71.24 0.43 -4.88 16 15 C -0.05 -0.73 5.14 -19.87 -0.10 -0.83 16 16 C -0.11 -1.86 9.70 22.27 0.22 -1.64 16 17 C -0.12 -2.05 10.02 22.30 0.22 -1.83 16 18 C 0.04 0.86 7.31 22.41 0.16 1.02 16 19 F -0.14 -3.03 17.18 44.97 0.77 -2.26 16 20 C 0.06 1.05 7.31 22.41 0.16 1.21 16 21 F -0.13 -2.60 17.18 44.97 0.77 -1.83 16 22 C -0.11 -1.41 9.68 22.31 0.22 -1.19 16 23 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 24 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 25 H -0.02 -1.13 8.14 -2.39 -0.02 -1.14 16 26 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.08 2.85 8.14 -2.38 -0.02 2.83 16 28 H 0.15 3.01 8.14 -2.39 -0.02 2.99 16 29 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.18 0.81 8.09 -2.39 -0.02 0.79 16 31 H 0.10 1.47 8.08 -2.39 -0.02 1.45 16 32 H 0.14 2.42 8.06 -2.91 -0.02 2.39 16 33 H 0.16 2.10 8.06 -2.91 -0.02 2.07 16 34 H 0.19 0.96 8.06 -2.91 -0.02 0.94 16 Total: -1.00 -79.08 320.86 4.25 -74.83 By element: Atomic # 1 Polarization: -1.53 SS G_CDS: 1.10 Total: -0.43 kcal Atomic # 6 Polarization: -54.72 SS G_CDS: 2.74 Total: -51.98 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: 0.28 Total: -56.03 kcal Atomic # 8 Polarization: -31.34 SS G_CDS: -2.70 Total: -34.04 kcal Atomic # 9 Polarization: -5.63 SS G_CDS: 1.55 Total: -4.09 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 16 Polarization: 26.46 SS G_CDS: -0.74 Total: 25.72 kcal Total: -79.08 4.25 -74.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172839168.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.345 kcal (2) G-P(sol) polarization free energy of solvation -79.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds