Wall clock time and date at job start Tue Mar 31 2020 05:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99803 * 2 1 4 4 H 1.48508 * 109.46528 * 269.98984 * 3 2 1 5 5 H 1.48494 * 109.47501 * 29.98704 * 3 2 1 6 6 H 1.48497 * 109.47289 * 149.99805 * 3 2 1 7 7 C 1.37873 * 120.00298 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00352 * 180.02562 * 7 2 1 9 9 C 1.50712 * 119.99713 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.46894 * 179.97438 * 9 7 2 11 11 S 1.81397 * 109.47070 * 180.02562 * 10 9 7 12 12 C 1.81408 * 103.00140 * 180.02562 * 11 10 9 13 13 C 1.50693 * 109.46979 * 179.97438 * 12 11 10 14 14 C 1.38297 * 119.97326 * 269.97768 * 13 12 11 15 15 C 1.38247 * 120.11092 * 180.02562 * 14 13 12 16 16 C 1.38173 * 120.05281 * 359.67853 * 15 14 13 17 17 C 1.38708 * 119.94454 * 0.61764 * 16 15 14 18 18 O 1.35901 * 120.05358 * 179.68139 * 17 16 15 19 19 C 1.42900 * 117.00024 * 359.72168 * 18 17 16 20 20 F 1.39905 * 109.47006 * 60.00330 * 19 18 17 21 21 F 1.39900 * 109.47309 * 300.00630 * 19 18 17 22 22 C 1.38123 * 119.97441 * 90.00246 * 13 12 11 23 23 H 0.97000 * 120.00018 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.46479 * 59.99702 * 9 7 2 25 25 H 1.08999 * 109.46753 * 299.99845 * 9 7 2 26 26 H 1.09007 * 109.47447 * 60.00060 * 10 9 7 27 27 H 1.08997 * 109.47464 * 300.00239 * 10 9 7 28 28 H 1.09000 * 109.46599 * 59.99911 * 12 11 10 29 29 H 1.08994 * 109.47051 * 300.00244 * 12 11 10 30 30 H 1.08000 * 119.93998 * 359.97438 * 14 13 12 31 31 H 1.07992 * 119.96915 * 179.97438 * 15 14 13 32 32 H 1.08001 * 120.02036 * 180.29701 * 16 15 14 33 33 H 1.09004 * 109.47113 * 180.02562 * 19 18 17 34 34 H 1.07998 * 120.02411 * 0.02562 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0462 -1.4002 5 1 1.4465 2.6528 0.6997 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 16 1.3383 -5.2330 -0.0002 12 6 2.6651 -6.4702 0.0007 13 6 2.0635 -7.8518 0.0008 14 6 1.7875 -8.4852 1.1988 15 6 1.2361 -9.7529 1.2022 16 6 0.9531 -10.3876 0.0080 17 6 1.2346 -9.7570 -1.1950 18 8 0.9632 -10.3819 -2.3709 19 6 0.3936 -11.6902 -2.2939 20 9 -0.8258 -11.6285 -1.6108 21 9 1.2689 -12.5404 -1.6096 22 6 1.7885 -8.4849 -1.1957 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5570 -0.8897 25 1 0.6241 -2.5567 0.8903 26 1 2.8720 -3.6043 0.8906 27 1 2.8720 -3.6043 -0.8894 28 1 3.2805 -6.3422 0.8911 29 1 3.2819 -6.3421 -0.8888 30 1 2.0040 -7.9889 2.1333 31 1 1.0220 -10.2455 2.1391 32 1 0.5179 -11.3761 0.0113 33 1 0.2276 -12.0740 -3.3005 34 1 2.0049 -7.9902 -2.1310 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176737499.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:29 Heat of formation + Delta-G solvation = -137.698334 kcal Electronic energy + Delta-G solvation = -19252.015766 eV Core-core repulsion = 15718.316394 eV Total energy + Delta-G solvation = -3533.699372 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.074 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.68900 -47.67761 -40.19781 -37.85177 -33.68484 -32.73667 -30.86508 -30.65667 -27.27954 -26.37412 -25.20517 -22.82015 -21.98977 -20.98452 -18.94618 -18.39369 -18.24719 -16.53014 -16.42502 -16.21506 -15.52697 -15.25952 -14.88918 -14.51252 -14.30735 -14.22596 -14.00313 -13.84055 -13.67261 -13.36555 -13.19895 -12.82533 -12.51970 -12.25908 -11.79826 -11.57299 -11.46847 -11.16941 -11.02648 -10.60884 -10.19763 -9.70327 -9.65605 -9.06673 -8.88040 -8.52515 -8.42401 -7.15464 -6.06120 -4.10902 0.95314 1.21275 2.23147 2.31657 3.12014 3.20629 3.28933 3.35468 3.38476 3.64338 3.94558 4.29028 4.41526 4.53761 4.60183 4.84515 4.95998 5.14778 5.23706 5.29361 5.47951 5.58099 5.82736 5.98533 5.98797 6.17337 6.22995 6.32452 6.44732 6.72425 6.89579 7.56511 7.65127 7.90111 8.27086 8.94159 9.53027 11.04659 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.041129 B = 0.002559 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.616669 B =10938.244681 C =11135.244718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.057 0.943 9 C 0.038 3.962 10 C -0.062 4.062 11 S -0.272 6.272 12 C -0.056 4.056 13 C -0.027 4.027 14 C -0.125 4.125 15 C -0.083 4.083 16 C -0.192 4.192 17 C 0.102 3.898 18 O -0.320 6.320 19 C 0.412 3.588 20 F -0.198 7.198 21 F -0.201 7.201 22 C -0.118 4.118 23 H 0.263 0.737 24 H 0.026 0.974 25 H 0.027 0.973 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.130 0.870 31 H 0.129 0.871 32 H 0.131 0.869 33 H 0.181 0.819 34 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.141 -25.163 -2.639 25.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.561 4.561 8 H 0.076 0.924 9 C -0.001 4.001 10 C -0.210 4.210 11 S -0.042 6.042 12 C -0.203 4.203 13 C -0.028 4.028 14 C -0.145 4.145 15 C -0.101 4.101 16 C -0.211 4.211 17 C 0.059 3.941 18 O -0.238 6.238 19 C 0.321 3.679 20 F -0.180 7.180 21 F -0.182 7.182 22 C -0.138 4.138 23 H 0.072 0.928 24 H 0.045 0.955 25 H 0.045 0.955 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.148 0.852 31 H 0.147 0.853 32 H 0.149 0.851 33 H 0.197 0.803 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.924 -25.131 -2.788 25.358 hybrid contribution 1.576 0.893 0.215 1.824 sum 3.499 -24.238 -2.572 24.624 Atomic orbital electron populations 1.69973 1.06079 1.26880 1.49969 1.25016 0.94899 0.99313 0.95054 0.86518 0.79749 0.83113 0.78176 1.20547 1.21094 1.19824 1.21097 0.92995 0.90256 1.51793 0.92448 1.18902 0.93411 0.89223 0.98569 1.23727 1.01499 0.92562 1.03180 1.87237 1.16302 1.02571 1.98042 1.22256 0.99440 0.93036 1.05595 1.19101 0.97429 0.93737 0.92559 1.21081 1.00427 0.95107 0.97889 1.20909 0.97121 0.94643 0.97421 1.21490 1.05747 1.01657 0.92201 1.18746 0.98580 0.93084 0.83680 1.86617 1.77453 1.29208 1.30482 1.23356 0.73031 0.78198 0.93279 1.93107 1.45845 1.95812 1.83257 1.93093 1.70307 1.71547 1.83290 1.20280 1.02148 0.92277 0.99078 0.92762 0.95529 0.95515 0.91323 0.91329 0.89205 0.89328 0.85179 0.85266 0.85117 0.80262 0.84562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.74 13.29 55.43 0.74 -26.00 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.04 0.98 4.98 -27.88 -0.14 0.84 16 10 C -0.06 -1.29 5.88 37.16 0.22 -1.07 16 11 S -0.27 -5.04 21.72 -107.50 -2.33 -7.38 16 12 C -0.06 -0.77 6.07 36.00 0.22 -0.55 16 13 C -0.03 -0.36 5.14 -104.65 -0.54 -0.89 16 14 C -0.13 -1.51 9.70 -39.56 -0.38 -1.89 16 15 C -0.08 -0.91 10.04 -39.60 -0.40 -1.31 16 16 C -0.19 -2.22 8.26 -39.43 -0.33 -2.55 16 17 C 0.10 1.26 6.48 -39.22 -0.25 1.01 16 18 O -0.32 -3.39 10.43 -19.43 -0.20 -3.59 16 19 C 0.41 3.00 5.98 101.05 0.60 3.61 16 20 F -0.20 -1.82 15.57 2.25 0.04 -1.79 16 21 F -0.20 -1.71 15.60 2.25 0.04 -1.68 16 22 C -0.12 -1.53 9.64 -39.43 -0.38 -1.91 16 23 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 24 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.07 1.36 8.14 -51.92 -0.42 0.94 16 27 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 28 H 0.09 1.12 8.08 -51.92 -0.42 0.70 16 29 H 0.09 1.12 8.08 -51.93 -0.42 0.70 16 30 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 31 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 32 H 0.13 1.37 5.10 -52.49 -0.27 1.11 16 33 H 0.18 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.14 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 316.39 15.07 4.77 4.77 Total: -1.00 -31.90 316.39 -7.80 -39.70 By element: Atomic # 1 Polarization: 1.65 SS G_CDS: -4.03 Total: -2.38 kcal Atomic # 6 Polarization: -16.25 SS G_CDS: -1.79 Total: -18.04 kcal Atomic # 7 Polarization: -26.74 SS G_CDS: 0.74 Total: -26.00 kcal Atomic # 8 Polarization: -3.39 SS G_CDS: -0.20 Total: -3.59 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.07 Total: -3.47 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -5.04 SS G_CDS: -2.33 Total: -7.38 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.90 -7.80 -39.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176737499.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.999 kcal (2) G-P(sol) polarization free energy of solvation -31.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds