Wall clock time and date at job start Tue Mar 31 2020 05:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99803 * 2 1 4 4 H 1.48508 * 109.46528 * 269.98984 * 3 2 1 5 5 H 1.48494 * 109.47501 * 29.98704 * 3 2 1 6 6 H 1.48497 * 109.47289 * 149.99805 * 3 2 1 7 7 C 1.37873 * 120.00298 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00352 * 180.02562 * 7 2 1 9 9 C 1.50712 * 119.99713 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.46894 * 179.97438 * 9 7 2 11 11 S 1.81397 * 109.47070 * 180.02562 * 10 9 7 12 12 C 1.81408 * 103.00140 * 180.02562 * 11 10 9 13 13 C 1.50693 * 109.46979 * 179.97438 * 12 11 10 14 14 C 1.38297 * 119.97326 * 269.97768 * 13 12 11 15 15 C 1.38247 * 120.11092 * 180.02562 * 14 13 12 16 16 C 1.38173 * 120.05281 * 359.67853 * 15 14 13 17 17 C 1.38708 * 119.94454 * 0.61764 * 16 15 14 18 18 O 1.35901 * 120.05358 * 179.68139 * 17 16 15 19 19 C 1.42900 * 117.00024 * 359.72168 * 18 17 16 20 20 F 1.39905 * 109.47006 * 60.00330 * 19 18 17 21 21 F 1.39900 * 109.47309 * 300.00630 * 19 18 17 22 22 C 1.38123 * 119.97441 * 90.00246 * 13 12 11 23 23 H 0.97000 * 120.00018 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.46479 * 59.99702 * 9 7 2 25 25 H 1.08999 * 109.46753 * 299.99845 * 9 7 2 26 26 H 1.09007 * 109.47447 * 60.00060 * 10 9 7 27 27 H 1.08997 * 109.47464 * 300.00239 * 10 9 7 28 28 H 1.09000 * 109.46599 * 59.99911 * 12 11 10 29 29 H 1.08994 * 109.47051 * 300.00244 * 12 11 10 30 30 H 1.08000 * 119.93998 * 359.97438 * 14 13 12 31 31 H 1.07992 * 119.96915 * 179.97438 * 15 14 13 32 32 H 1.08001 * 120.02036 * 180.29701 * 16 15 14 33 33 H 1.09004 * 109.47113 * 180.02562 * 19 18 17 34 34 H 1.07998 * 120.02411 * 0.02562 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0462 -1.4002 5 1 1.4465 2.6528 0.6997 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 16 1.3383 -5.2330 -0.0002 12 6 2.6651 -6.4702 0.0007 13 6 2.0635 -7.8518 0.0008 14 6 1.7875 -8.4852 1.1988 15 6 1.2361 -9.7529 1.2022 16 6 0.9531 -10.3876 0.0080 17 6 1.2346 -9.7570 -1.1950 18 8 0.9632 -10.3819 -2.3709 19 6 0.3936 -11.6902 -2.2939 20 9 -0.8258 -11.6285 -1.6108 21 9 1.2689 -12.5404 -1.6096 22 6 1.7885 -8.4849 -1.1957 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5570 -0.8897 25 1 0.6241 -2.5567 0.8903 26 1 2.8720 -3.6043 0.8906 27 1 2.8720 -3.6043 -0.8894 28 1 3.2805 -6.3422 0.8911 29 1 3.2819 -6.3421 -0.8888 30 1 2.0040 -7.9889 2.1333 31 1 1.0220 -10.2455 2.1391 32 1 0.5179 -11.3761 0.0113 33 1 0.2276 -12.0740 -3.3005 34 1 2.0049 -7.9902 -2.1310 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176737499.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:28 Heat of formation + Delta-G solvation = -155.243080 kcal Electronic energy + Delta-G solvation = -19252.776563 eV Core-core repulsion = 15718.316394 eV Total energy + Delta-G solvation = -3534.460170 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.074 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.31709 -48.31453 -41.05233 -38.68943 -35.77179 -33.70386 -32.90018 -31.53165 -28.34305 -27.25576 -26.97997 -23.73318 -23.33416 -22.46548 -19.72155 -19.09464 -18.88970 -18.66904 -17.34913 -17.14879 -16.78052 -16.51208 -16.15774 -15.71552 -15.54942 -15.23168 -14.99596 -14.88998 -14.64565 -14.47200 -14.21484 -13.91609 -13.62886 -13.55962 -13.44542 -12.91331 -12.84954 -12.45212 -12.38365 -12.15857 -12.06137 -11.66856 -11.36229 -10.84119 -10.60710 -9.88345 -9.45465 -8.63916 -8.22919 -6.36731 -0.08268 0.30481 1.00778 1.41549 1.43070 1.54346 1.60338 1.76288 2.40730 2.54497 2.71194 3.10339 3.48760 3.56938 3.69575 3.78316 3.91471 4.04562 4.25051 4.27990 4.31437 4.39422 4.54651 4.58588 4.88150 4.91830 5.09756 5.33328 5.38624 5.44718 5.49990 5.51424 5.74093 6.02463 6.11024 6.77981 7.32933 8.88911 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.041129 B = 0.002559 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.616669 B =10938.244681 C =11135.244718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.972 3.028 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.542 4.542 8 H 0.069 0.931 9 C 0.044 3.956 10 C -0.050 4.050 11 S -0.309 6.309 12 C -0.036 4.036 13 C -0.042 4.042 14 C -0.131 4.131 15 C -0.083 4.083 16 C -0.196 4.196 17 C 0.092 3.908 18 O -0.330 6.330 19 C 0.406 3.594 20 F -0.211 7.211 21 F -0.208 7.208 22 C -0.132 4.132 23 H 0.265 0.735 24 H -0.006 1.006 25 H -0.004 1.004 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.107 0.893 29 H 0.101 0.899 30 H 0.143 0.857 31 H 0.156 0.844 32 H 0.140 0.860 33 H 0.235 0.765 34 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.544 -26.202 -2.622 26.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.796 3.204 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.581 4.581 8 H 0.087 0.913 9 C 0.006 3.994 10 C -0.198 4.198 11 S -0.079 6.079 12 C -0.183 4.183 13 C -0.044 4.044 14 C -0.151 4.151 15 C -0.101 4.101 16 C -0.215 4.215 17 C 0.049 3.951 18 O -0.248 6.248 19 C 0.317 3.683 20 F -0.192 7.192 21 F -0.190 7.190 22 C -0.152 4.152 23 H 0.074 0.926 24 H 0.013 0.987 25 H 0.014 0.986 26 H 0.098 0.902 27 H 0.096 0.904 28 H 0.126 0.874 29 H 0.120 0.880 30 H 0.161 0.839 31 H 0.174 0.826 32 H 0.158 0.842 33 H 0.250 0.750 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.338 -26.176 -2.773 26.533 hybrid contribution 1.092 1.020 0.196 1.507 sum 4.430 -25.156 -2.577 25.673 Atomic orbital electron populations 1.70119 1.08024 1.28061 1.51029 1.26043 0.95785 1.03610 0.94386 0.85338 0.78621 0.77841 0.78583 1.19655 1.20783 1.18358 1.21562 0.93749 0.91329 1.51479 0.91329 1.18674 0.93728 0.91530 0.95494 1.23350 1.00133 0.92207 1.04098 1.87311 1.19272 1.03109 1.98193 1.22276 0.97494 0.91362 1.07139 1.19114 0.98609 0.93434 0.93226 1.21313 1.00205 0.95599 0.97993 1.21248 0.96089 0.94302 0.98413 1.21724 1.05430 1.02087 0.92262 1.18897 0.98410 0.93169 0.84611 1.86612 1.77597 1.30735 1.29878 1.24275 0.71999 0.76860 0.95204 1.93080 1.46581 1.95774 1.83808 1.93074 1.70600 1.71564 1.83755 1.20409 1.02677 0.92934 0.99192 0.92577 0.98714 0.98599 0.90243 0.90394 0.87442 0.88035 0.83944 0.82606 0.84206 0.74952 0.84489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.33 13.29 21.45 0.28 -57.05 16 2 C 0.00 0.01 5.46 84.65 0.46 0.47 16 3 Si 0.97 43.82 29.54 68.60 2.03 45.85 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 6 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 7 C -0.54 -30.66 9.11 25.60 0.23 -30.42 16 8 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 9 C 0.04 2.38 4.98 29.85 0.15 2.53 16 10 C -0.05 -2.09 5.88 71.98 0.42 -1.67 16 11 S -0.31 -11.48 21.72 -56.49 -1.23 -12.71 16 12 C -0.04 -0.94 6.07 71.23 0.43 -0.50 16 13 C -0.04 -1.07 5.14 -19.88 -0.10 -1.17 16 14 C -0.13 -2.93 9.70 22.29 0.22 -2.72 16 15 C -0.08 -1.66 10.04 22.26 0.22 -1.44 16 16 C -0.20 -4.24 8.26 22.37 0.18 -4.05 16 17 C 0.09 2.19 6.48 22.50 0.15 2.33 16 18 O -0.33 -6.56 10.43 -92.44 -0.96 -7.52 16 19 C 0.41 5.09 5.98 113.37 0.68 5.76 16 20 F -0.21 -3.55 15.57 44.97 0.70 -2.85 16 21 F -0.21 -3.18 15.60 44.97 0.70 -2.48 16 22 C -0.13 -3.32 9.64 22.36 0.22 -3.10 16 23 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 24 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 25 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 26 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 27 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 28 H 0.11 2.45 8.08 -2.39 -0.02 2.43 16 29 H 0.10 2.40 8.08 -2.39 -0.02 2.38 16 30 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16 31 H 0.16 2.21 8.06 -2.91 -0.02 2.18 16 32 H 0.14 2.71 5.10 -2.91 -0.01 2.70 16 33 H 0.23 0.27 8.14 -2.38 -0.02 0.25 16 34 H 0.14 3.30 8.06 -2.91 -0.02 3.27 16 Total: -1.00 -70.28 316.39 5.89 -64.39 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: 1.11 Total: 6.34 kcal Atomic # 6 Polarization: -37.24 SS G_CDS: 3.26 Total: -33.98 kcal Atomic # 7 Polarization: -57.33 SS G_CDS: 0.28 Total: -57.05 kcal Atomic # 8 Polarization: -6.56 SS G_CDS: -0.96 Total: -7.52 kcal Atomic # 9 Polarization: -6.73 SS G_CDS: 1.40 Total: -5.33 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: -11.48 SS G_CDS: -1.23 Total: -12.71 kcal Total: -70.28 5.89 -64.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176737499.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.849 kcal (2) G-P(sol) polarization free energy of solvation -70.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds