Wall clock time and date at job start Tue Mar 31 2020 05:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37670 * 121.51880 * 2 1 4 4 C 1.35950 * 114.59261 * 179.97438 * 3 2 1 5 5 N 1.39336 * 127.28100 * 180.26085 * 4 3 2 6 6 C 1.34782 * 120.00171 * 179.70660 * 5 4 3 7 7 O 1.21568 * 119.99577 * 0.02562 * 6 5 4 8 8 C 1.47847 * 120.00161 * 179.97438 * 6 5 4 9 9 C 1.39935 * 120.02556 * 359.72992 * 8 6 5 10 10 C 1.38329 * 120.35230 * 179.75869 * 9 8 6 11 11 C 1.37753 * 120.41355 * 0.51663 * 10 9 8 12 12 C 1.40753 * 120.04289 * 359.74149 * 11 10 9 13 13 C 1.41441 * 120.17472 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00025 * 334.92360 * 13 12 11 15 15 C 1.39931 * 119.99855 * 154.92026 * 13 12 11 16 16 N 1.30830 * 120.00434 * 342.59049 * 15 13 12 17 17 Si 1.86802 * 120.00151 * 162.59221 * 15 13 12 18 18 H 1.48496 * 109.47124 * 89.99920 * 17 15 13 19 19 H 1.48494 * 109.47623 * 210.00270 * 17 15 13 20 20 H 1.48505 * 109.46876 * 330.00470 * 17 15 13 21 21 C 1.39010 * 120.02462 * 179.97438 * 8 6 5 22 22 S 1.72057 * 105.43379 * 0.02562 * 4 3 2 23 23 N 1.30106 * 121.51675 * 180.02562 * 2 1 3 24 24 H 1.08998 * 109.47230 * 269.97602 * 1 2 3 25 25 H 1.09005 * 109.47017 * 29.97378 * 1 2 3 26 26 H 1.09003 * 109.47382 * 149.97261 * 1 2 3 27 27 H 1.08007 * 122.70221 * 0.02562 * 3 2 1 28 28 H 0.97005 * 120.00300 * 359.71288 * 5 4 3 29 29 H 1.07994 * 119.82588 * 359.97438 * 9 8 6 30 30 H 1.08000 * 119.79239 * 180.25443 * 10 9 8 31 31 H 1.08002 * 119.97679 * 179.75934 * 11 10 9 32 32 H 0.97000 * 120.00301 * 179.97438 * 16 15 13 33 33 H 1.08001 * 120.20514 * 359.96310 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2267 1.1736 0.0000 4 6 3.5763 1.0096 0.0006 5 7 4.5478 2.0084 0.0057 6 6 5.8544 1.6777 0.0115 7 8 6.1852 0.5078 0.0117 8 6 6.8852 2.7374 0.0164 9 6 6.5050 4.0841 0.0094 10 6 7.4638 5.0812 0.0190 11 6 8.8035 4.7604 0.0248 12 6 9.2050 3.4114 0.0266 13 6 10.5798 3.0789 0.0331 14 1 11.3057 3.7754 -0.3597 15 6 10.9993 1.8475 0.5487 16 7 10.2015 1.1556 1.3211 17 14 12.6985 1.1913 0.1342 18 1 13.6736 1.6668 1.1481 19 1 12.6693 -0.2933 0.1335 20 1 13.1033 1.6791 -1.2088 21 6 8.2330 2.3968 0.0229 22 16 3.8308 -0.6920 0.0003 23 7 2.1871 -1.1091 -0.0005 24 1 -0.3633 -0.0004 1.0276 25 1 -0.3633 0.8903 -0.5134 26 1 -0.3634 -0.8897 -0.5143 27 1 1.7570 2.1462 0.0004 28 1 4.2838 2.9419 0.0053 29 1 5.4575 4.3465 -0.0001 30 1 7.1602 6.1176 0.0176 31 1 9.5461 5.5446 0.0284 32 1 10.4922 0.3019 1.6781 33 1 8.5310 1.3588 0.0250 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176856345.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:36 Heat of formation + Delta-G solvation = 16.165690 kcal Electronic energy + Delta-G solvation = -19147.749418 eV Core-core repulsion = 16071.411277 eV Total energy + Delta-G solvation = -3076.338141 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.03319 -38.73346 -37.29696 -34.94864 -33.86439 -30.95068 -29.69456 -29.58584 -29.35349 -25.52861 -23.97417 -22.20222 -21.12650 -20.60136 -19.46373 -18.10960 -17.55156 -16.69268 -15.84555 -15.34975 -15.22795 -14.86560 -14.35552 -14.25282 -13.92663 -13.42421 -12.97034 -12.74674 -12.67894 -12.53450 -12.50602 -11.82212 -11.34466 -11.19586 -11.06240 -11.02542 -10.91068 -10.63822 -10.52129 -10.00327 -9.88053 -9.36749 -9.34128 -8.43213 -8.35426 -7.82998 -7.70345 -6.94188 -4.56272 0.89321 1.45749 1.91285 2.19931 2.57432 2.67343 3.00376 3.02615 3.07516 3.08695 3.54932 3.82228 4.45914 4.82789 5.22680 5.27915 5.32125 5.41397 5.46115 5.55357 5.65883 5.87996 6.02131 6.06831 6.35423 6.53580 6.75777 6.81876 6.90012 7.04219 7.17086 7.29415 7.51128 7.63067 7.78829 7.98369 8.31183 8.32432 8.64530 8.66276 10.00597 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.025130 B = 0.004021 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.930530 B = 6961.317011 C = 7988.213420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.136 3.864 3 C -0.282 4.282 4 C 0.069 3.931 5 N -0.628 5.628 6 C 0.557 3.443 7 O -0.505 6.505 8 C -0.128 4.128 9 C -0.222 4.222 10 C -0.092 4.092 11 C -0.208 4.208 12 C 0.099 3.901 13 C -0.455 4.455 14 H 0.084 0.916 15 C 0.073 3.927 16 N -0.781 5.781 17 Si 0.912 3.088 18 H -0.268 1.268 19 H -0.273 1.273 20 H -0.259 1.259 21 C -0.084 4.084 22 S 0.343 5.657 23 N -0.513 5.513 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.152 0.848 28 H 0.420 0.580 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.287 0.713 33 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.823 1.318 -1.690 12.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.040 4.040 3 C -0.320 4.320 4 C -0.160 4.160 5 N -0.274 5.274 6 C 0.350 3.650 7 O -0.379 6.379 8 C -0.131 4.131 9 C -0.242 4.242 10 C -0.111 4.111 11 C -0.228 4.228 12 C 0.096 3.904 13 C -0.484 4.484 14 H 0.102 0.898 15 C -0.147 4.147 16 N -0.405 5.405 17 Si 0.735 3.265 18 H -0.193 1.193 19 H -0.198 1.198 20 H -0.183 1.183 21 C -0.104 4.104 22 S 0.493 5.507 23 N -0.340 5.340 24 H 0.097 0.903 25 H 0.095 0.905 26 H 0.094 0.906 27 H 0.169 0.831 28 H 0.259 0.741 29 H 0.108 0.892 30 H 0.114 0.886 31 H 0.117 0.883 32 H 0.098 0.902 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -10.589 -1.704 -1.538 10.835 hybrid contribution -0.300 2.083 0.006 2.105 sum -10.888 0.379 -1.532 11.002 Atomic orbital electron populations 1.20502 0.87306 1.03382 1.03123 1.20864 0.98350 0.87955 0.96837 1.20649 0.90459 1.01260 1.19600 1.22997 0.92721 0.99111 1.01122 1.43076 1.04434 1.08487 1.71387 1.19381 0.81189 0.90089 0.74376 1.90706 1.79880 1.19748 1.47613 1.19143 0.92713 0.91147 1.10131 1.20298 0.96911 0.91749 1.15227 1.20437 0.93409 0.96866 1.00366 1.21151 0.94472 0.96029 1.11103 1.17590 0.93485 0.90488 0.88814 1.19621 0.92630 1.01070 1.35065 0.89830 1.25995 0.99984 0.96152 0.92579 1.69760 1.37191 1.12613 1.20954 0.86243 0.81316 0.78625 0.80268 1.19330 1.19814 1.18285 1.21659 0.89186 1.01094 0.98496 1.85124 1.06188 0.91909 1.67502 1.76530 1.02942 1.26408 1.28074 0.90337 0.90511 0.90626 0.83076 0.74089 0.89179 0.88551 0.88297 0.90178 0.84585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.26 36.00 0.37 -0.37 16 2 C 0.14 1.83 6.71 -83.53 -0.56 1.27 16 3 C -0.28 -3.74 10.00 -40.61 -0.41 -4.15 16 4 C 0.07 1.11 7.28 -14.96 -0.11 1.00 16 5 N -0.63 -10.26 5.37 -12.20 -0.07 -10.32 16 6 C 0.56 11.44 7.74 -12.33 -0.10 11.34 16 7 O -0.51 -11.62 14.08 5.31 0.07 -11.55 16 8 C -0.13 -2.81 5.87 -105.04 -0.62 -3.43 16 9 C -0.22 -4.30 9.55 -38.91 -0.37 -4.67 16 10 C -0.09 -1.83 10.01 -39.73 -0.40 -2.23 16 11 C -0.21 -4.62 9.78 -38.81 -0.38 -5.00 16 12 C 0.10 2.47 5.57 -106.87 -0.59 1.87 16 13 C -0.46 -11.36 9.05 -37.73 -0.34 -11.70 16 14 H 0.08 1.97 7.90 -52.49 -0.41 1.56 16 15 C 0.07 1.75 5.14 -17.34 -0.09 1.66 16 16 N -0.78 -19.75 10.97 55.55 0.61 -19.14 16 17 Si 0.91 17.99 29.59 -169.99 -5.03 12.96 16 18 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 19 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 20 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 21 C -0.08 -2.11 8.23 -38.44 -0.32 -2.43 16 22 S 0.34 5.95 21.06 -107.50 -2.26 3.68 16 23 N -0.51 -8.23 12.04 32.11 0.39 -7.84 16 24 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.08 0.53 8.11 -51.93 -0.42 0.11 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.15 1.54 8.06 -52.48 -0.42 1.12 16 28 H 0.42 5.56 6.84 -40.82 -0.28 5.29 16 29 H 0.09 1.40 6.38 -52.49 -0.33 1.06 16 30 H 0.10 1.60 8.06 -52.49 -0.42 1.17 16 31 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16 32 H 0.29 6.68 8.30 -40.82 -0.34 6.34 16 33 H 0.14 3.68 5.76 -52.49 -0.30 3.38 16 LS Contribution 303.37 15.07 4.57 4.57 Total: -1.00 -28.16 303.37 -8.63 -36.79 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -3.00 Total: 7.68 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -3.91 Total: -16.83 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.93 Total: -37.30 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.07 Total: -11.55 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.03 Total: 12.96 kcal Atomic # 16 Polarization: 5.95 SS G_CDS: -2.26 Total: 3.68 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -28.16 -8.63 -36.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176856345.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.957 kcal (2) G-P(sol) polarization free energy of solvation -28.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds