Wall clock time and date at job start Tue Mar 31 2020 05:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37670 * 121.51880 * 2 1 4 4 C 1.35950 * 114.59261 * 179.97438 * 3 2 1 5 5 N 1.39336 * 127.28100 * 180.26085 * 4 3 2 6 6 C 1.34782 * 120.00171 * 179.70660 * 5 4 3 7 7 O 1.21568 * 119.99577 * 0.02562 * 6 5 4 8 8 C 1.47847 * 120.00161 * 179.97438 * 6 5 4 9 9 C 1.39935 * 120.02556 * 359.72992 * 8 6 5 10 10 C 1.38329 * 120.35230 * 179.75869 * 9 8 6 11 11 C 1.37753 * 120.41355 * 0.51663 * 10 9 8 12 12 C 1.40753 * 120.04289 * 359.74149 * 11 10 9 13 13 C 1.41441 * 120.17472 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00025 * 334.92360 * 13 12 11 15 15 C 1.39931 * 119.99855 * 154.92026 * 13 12 11 16 16 N 1.30830 * 120.00434 * 342.59049 * 15 13 12 17 17 Si 1.86802 * 120.00151 * 162.59221 * 15 13 12 18 18 H 1.48496 * 109.47124 * 89.99920 * 17 15 13 19 19 H 1.48494 * 109.47623 * 210.00270 * 17 15 13 20 20 H 1.48505 * 109.46876 * 330.00470 * 17 15 13 21 21 C 1.39010 * 120.02462 * 179.97438 * 8 6 5 22 22 S 1.72057 * 105.43379 * 0.02562 * 4 3 2 23 23 N 1.30106 * 121.51675 * 180.02562 * 2 1 3 24 24 H 1.08998 * 109.47230 * 269.97602 * 1 2 3 25 25 H 1.09005 * 109.47017 * 29.97378 * 1 2 3 26 26 H 1.09003 * 109.47382 * 149.97261 * 1 2 3 27 27 H 1.08007 * 122.70221 * 0.02562 * 3 2 1 28 28 H 0.97005 * 120.00300 * 359.71288 * 5 4 3 29 29 H 1.07994 * 119.82588 * 359.97438 * 9 8 6 30 30 H 1.08000 * 119.79239 * 180.25443 * 10 9 8 31 31 H 1.08002 * 119.97679 * 179.75934 * 11 10 9 32 32 H 0.97000 * 120.00301 * 179.97438 * 16 15 13 33 33 H 1.08001 * 120.20514 * 359.96310 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2267 1.1736 0.0000 4 6 3.5763 1.0096 0.0006 5 7 4.5478 2.0084 0.0057 6 6 5.8544 1.6777 0.0115 7 8 6.1852 0.5078 0.0117 8 6 6.8852 2.7374 0.0164 9 6 6.5050 4.0841 0.0094 10 6 7.4638 5.0812 0.0190 11 6 8.8035 4.7604 0.0248 12 6 9.2050 3.4114 0.0266 13 6 10.5798 3.0789 0.0331 14 1 11.3057 3.7754 -0.3597 15 6 10.9993 1.8475 0.5487 16 7 10.2015 1.1556 1.3211 17 14 12.6985 1.1913 0.1342 18 1 13.6736 1.6668 1.1481 19 1 12.6693 -0.2933 0.1335 20 1 13.1033 1.6791 -1.2088 21 6 8.2330 2.3968 0.0229 22 16 3.8308 -0.6920 0.0003 23 7 2.1871 -1.1091 -0.0005 24 1 -0.3633 -0.0004 1.0276 25 1 -0.3633 0.8903 -0.5134 26 1 -0.3634 -0.8897 -0.5143 27 1 1.7570 2.1462 0.0004 28 1 4.2838 2.9419 0.0053 29 1 5.4575 4.3465 -0.0001 30 1 7.1602 6.1176 0.0176 31 1 9.5461 5.5446 0.0284 32 1 10.4922 0.3019 1.6781 33 1 8.5310 1.3588 0.0250 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176856345.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:35 Heat of formation + Delta-G solvation = -0.735095 kcal Electronic energy + Delta-G solvation = -19148.482291 eV Core-core repulsion = 16071.411277 eV Total energy + Delta-G solvation = -3077.071014 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.53398 -39.94835 -38.97057 -36.39384 -35.59488 -32.52137 -31.38129 -30.81142 -30.40610 -27.29370 -25.42276 -23.53747 -22.81385 -22.07690 -20.72024 -19.69298 -18.92208 -18.20262 -17.27290 -17.01645 -16.61895 -16.49773 -15.89295 -15.42498 -15.15594 -15.05610 -14.62185 -14.34206 -13.78461 -13.61938 -13.41981 -13.25191 -13.00015 -12.81104 -12.60501 -12.32595 -12.25646 -12.23847 -12.06878 -11.56929 -11.46127 -11.09712 -10.85334 -9.78393 -9.64074 -9.46567 -9.41588 -8.70163 -6.41568 -0.38563 0.23517 0.31743 0.96440 0.99803 1.36454 1.41911 1.48840 1.52334 1.72668 1.96289 2.17496 2.72071 3.63264 3.72405 3.83695 4.22915 4.35794 4.48658 4.52189 4.54154 4.76519 4.84232 4.85419 5.01434 5.06931 5.11987 5.26452 5.34126 5.44099 5.73387 5.82280 5.84319 5.99132 6.10227 6.25823 6.54124 6.79696 6.85829 6.88620 8.26500 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.025130 B = 0.004021 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.930530 B = 6961.317011 C = 7988.213420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.136 3.864 3 C -0.249 4.249 4 C 0.051 3.949 5 N -0.609 5.609 6 C 0.556 3.444 7 O -0.541 6.541 8 C -0.136 4.136 9 C -0.196 4.196 10 C -0.092 4.092 11 C -0.211 4.211 12 C 0.068 3.932 13 C -0.495 4.495 14 H 0.086 0.914 15 C 0.031 3.969 16 N -0.824 5.824 17 Si 0.980 3.020 18 H -0.258 1.258 19 H -0.274 1.274 20 H -0.255 1.255 21 C -0.123 4.123 22 S 0.261 5.739 23 N -0.523 5.523 24 H 0.096 0.904 25 H 0.108 0.892 26 H 0.076 0.924 27 H 0.196 0.804 28 H 0.436 0.564 29 H 0.142 0.858 30 H 0.143 0.857 31 H 0.111 0.889 32 H 0.287 0.713 33 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.970 3.911 -2.004 15.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.041 4.041 3 C -0.287 4.287 4 C -0.177 4.177 5 N -0.256 5.256 6 C 0.347 3.653 7 O -0.417 6.417 8 C -0.139 4.139 9 C -0.216 4.216 10 C -0.110 4.110 11 C -0.231 4.231 12 C 0.065 3.935 13 C -0.524 4.524 14 H 0.104 0.896 15 C -0.184 4.184 16 N -0.449 5.449 17 Si 0.801 3.199 18 H -0.182 1.182 19 H -0.199 1.199 20 H -0.178 1.178 21 C -0.144 4.144 22 S 0.411 5.589 23 N -0.349 5.349 24 H 0.115 0.885 25 H 0.127 0.873 26 H 0.095 0.905 27 H 0.213 0.787 28 H 0.279 0.721 29 H 0.159 0.841 30 H 0.161 0.839 31 H 0.129 0.871 32 H 0.098 0.902 33 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -13.775 0.919 -1.855 13.929 hybrid contribution 0.289 1.413 0.085 1.445 sum -13.486 2.331 -1.770 13.800 Atomic orbital electron populations 1.20717 0.83548 1.05098 1.04756 1.21760 1.00624 0.87268 0.94420 1.21132 0.88973 1.03010 1.15587 1.23036 0.93572 0.97638 1.03429 1.42613 1.02959 1.09376 1.70677 1.19202 0.82474 0.89207 0.74394 1.90706 1.80836 1.21022 1.49170 1.19393 0.92044 0.93070 1.09423 1.20881 0.99615 0.90109 1.10952 1.20943 0.92154 0.99324 0.98600 1.21477 0.96451 0.95115 1.10018 1.17920 0.93784 0.91877 0.89881 1.19874 0.93181 1.02315 1.37020 0.89633 1.26816 1.03617 0.96066 0.91905 1.69860 1.39207 1.13138 1.22729 0.85224 0.76823 0.77682 0.80200 1.18233 1.19859 1.17827 1.21451 0.91082 0.99723 1.02135 1.85406 1.08779 0.94961 1.69711 1.76715 1.01455 1.27540 1.29149 0.88531 0.87301 0.90487 0.78668 0.72089 0.84079 0.83932 0.87100 0.90226 0.88040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.06 10.26 71.24 0.73 -0.33 16 2 C 0.14 3.21 6.71 42.68 0.29 3.49 16 3 C -0.25 -5.59 10.00 21.60 0.22 -5.38 16 4 C 0.05 1.54 7.28 82.97 0.60 2.14 16 5 N -0.61 -18.60 5.37 -310.77 -1.67 -20.27 16 6 C 0.56 22.96 7.74 86.79 0.67 23.63 16 7 O -0.54 -26.26 14.08 -3.93 -0.06 -26.31 16 8 C -0.14 -5.97 5.87 -20.14 -0.12 -6.09 16 9 C -0.20 -6.93 9.55 22.70 0.22 -6.71 16 10 C -0.09 -3.33 10.01 22.18 0.22 -3.11 16 11 C -0.21 -9.22 9.78 22.77 0.22 -9.00 16 12 C 0.07 3.50 5.57 -21.32 -0.12 3.38 16 13 C -0.49 -25.95 9.05 23.47 0.21 -25.74 16 14 H 0.09 4.22 7.90 -2.91 -0.02 4.20 16 15 C 0.03 1.58 5.14 85.25 0.44 2.02 16 16 N -0.82 -44.66 10.97 21.82 0.24 -44.42 16 17 Si 0.98 38.66 29.59 68.60 2.03 40.69 16 18 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 19 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 20 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 21 C -0.12 -6.49 8.23 23.01 0.19 -6.30 16 22 S 0.26 9.28 21.06 -56.49 -1.19 8.09 16 23 N -0.52 -16.27 12.04 -52.33 -0.63 -16.90 16 24 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.11 0.82 8.11 -2.38 -0.02 0.80 16 26 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.20 2.64 8.06 -2.91 -0.02 2.61 16 28 H 0.44 9.69 6.84 -92.70 -0.63 9.05 16 29 H 0.14 3.51 6.38 -2.91 -0.02 3.49 16 30 H 0.14 3.88 8.06 -2.91 -0.02 3.85 16 31 H 0.11 4.47 8.06 -2.91 -0.02 4.44 16 32 H 0.29 14.42 8.30 -92.71 -0.77 13.65 16 33 H 0.10 5.99 5.76 -2.91 -0.02 5.97 16 Total: -1.00 -67.87 303.37 3.03 -64.84 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: 0.53 Total: 22.27 kcal Atomic # 6 Polarization: -31.76 SS G_CDS: 3.77 Total: -27.99 kcal Atomic # 7 Polarization: -79.54 SS G_CDS: -2.06 Total: -81.60 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -0.06 Total: -26.31 kcal Atomic # 14 Polarization: 38.66 SS G_CDS: 2.03 Total: 40.69 kcal Atomic # 16 Polarization: 9.28 SS G_CDS: -1.19 Total: 8.09 kcal Total: -67.87 3.03 -64.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176856345.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.106 kcal (2) G-P(sol) polarization free energy of solvation -67.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds