Wall clock time and date at job start Tue Mar 31 2020 06:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86807 * 119.99574 * 2 1 4 4 H 1.48493 * 109.46956 * 269.99654 * 3 2 1 5 5 H 1.48492 * 109.46992 * 29.99987 * 3 2 1 6 6 H 1.48495 * 109.46644 * 149.99821 * 3 2 1 7 7 C 1.38643 * 119.99859 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99874 * 180.02562 * 7 2 1 9 9 O 1.34831 * 120.00736 * 0.02562 * 7 2 1 10 10 C 1.35745 * 117.00312 * 185.05395 * 9 7 2 11 11 C 1.38877 * 120.07197 * 354.46843 * 10 9 7 12 12 C 1.38096 * 119.93329 * 180.02562 * 11 10 9 13 13 C 1.38304 * 120.06594 * 0.02562 * 12 11 10 14 14 C 1.50701 * 119.92625 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.47059 * 90.00766 * 14 13 12 16 16 O 1.21272 * 120.00237 * 359.97438 * 15 14 13 17 17 N 1.34780 * 119.99922 * 180.27713 * 15 14 13 18 18 C 1.39508 * 119.99909 * 179.72402 * 17 15 14 19 19 C 1.42025 * 126.89180 * 359.70274 * 18 17 15 20 20 C 1.35250 * 103.95219 * 179.91637 * 19 18 17 21 21 O 1.34089 * 106.61086 * 0.34536 * 20 19 18 22 22 N 1.20907 * 111.74543 * 359.76455 * 21 20 19 23 23 C 1.38298 * 120.14326 * 0.25695 * 13 12 11 24 24 C 1.38105 * 120.06444 * 359.45110 * 23 13 12 25 25 H 0.97000 * 120.00281 * 0.02562 * 1 2 3 26 26 H 1.08004 * 120.03543 * 359.97438 * 11 10 9 27 27 H 1.08004 * 119.96668 * 180.02562 * 12 11 10 28 28 H 1.09000 * 109.47468 * 330.00338 * 14 13 12 29 29 H 1.09001 * 109.47115 * 210.00399 * 14 13 12 30 30 H 0.96998 * 120.00268 * 359.71387 * 17 15 14 31 31 H 1.07997 * 128.02237 * 0.03484 * 19 18 17 32 32 H 1.08003 * 126.69163 * 180.11632 * 20 19 18 33 33 H 1.07994 * 119.96878 * 179.70329 * 23 13 12 34 34 H 1.07993 * 120.03458 * 180.27464 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6179 0.0000 4 1 2.4970 2.0465 -1.4000 5 1 1.4469 2.6527 0.7000 6 1 3.5470 1.4403 0.7001 7 6 2.0088 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3348 -2.3684 0.0005 10 6 2.0700 -3.5045 0.1076 11 6 3.4572 -3.4394 0.0952 12 6 4.2024 -4.5969 0.2038 13 6 3.5686 -5.8203 0.3243 14 6 4.3849 -7.0816 0.4420 15 6 4.6631 -7.3661 1.8955 16 8 4.2406 -6.6180 2.7515 17 7 5.3866 -8.4485 2.2439 18 6 5.6490 -8.7087 3.5891 19 6 5.2336 -7.9335 4.7043 20 6 5.7335 -8.6003 5.7694 21 8 6.3869 -9.6653 5.2827 22 7 6.3315 -9.7117 4.0758 23 6 2.1873 -5.8891 0.3311 24 6 1.4366 -4.7345 0.2289 25 1 -0.4850 0.8400 -0.0004 26 1 3.9528 -2.4845 -0.0001 27 1 5.2812 -4.5469 0.1946 28 1 5.3276 -6.9554 -0.0904 29 1 3.8313 -7.9144 0.0083 30 1 5.7248 -9.0467 1.5593 31 1 4.6517 -7.0237 4.7022 32 1 5.6299 -8.3263 6.8090 33 1 1.6953 -6.8463 0.4205 34 1 0.3580 -4.7884 0.2388 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179518982.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:24 Heat of formation + Delta-G solvation = 34.018498 kcal Electronic energy + Delta-G solvation = -21183.045734 eV Core-core repulsion = 17664.728878 eV Total energy + Delta-G solvation = -3518.316856 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.01112 -40.23273 -38.91044 -36.68644 -35.57595 -32.93353 -32.39652 -31.70857 -31.09512 -30.18892 -26.91148 -25.23690 -23.76913 -22.48863 -22.01128 -21.22953 -20.21503 -18.45839 -18.01136 -17.73624 -17.13882 -16.99008 -16.64983 -15.53100 -14.79179 -14.53856 -14.43028 -14.18355 -13.83656 -13.61818 -13.43608 -13.29595 -12.77415 -12.69639 -12.11048 -11.74100 -11.62540 -11.52847 -11.29759 -10.90756 -10.82276 -10.65069 -10.44601 -10.03286 -9.87648 -9.35212 -8.99639 -8.84484 -8.19065 -7.21463 -6.46524 -4.05265 1.27872 1.90894 2.09194 2.21850 2.58545 2.76493 3.11786 3.13235 3.16959 3.18121 3.95638 4.17840 4.44592 4.71172 4.85720 5.04761 5.06149 5.13904 5.19658 5.27663 5.36131 5.54553 5.67710 5.79236 5.81114 6.18567 6.24789 6.38038 6.65732 6.86296 6.95975 7.04313 7.20350 7.32251 7.42233 7.79718 7.91513 7.98526 8.13134 8.99081 9.68679 10.71415 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.028007 B = 0.003009 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.509077 B = 9304.669508 C = 9730.456945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.392 4.392 8 H 0.092 0.908 9 O -0.176 6.176 10 C 0.159 3.841 11 C -0.233 4.233 12 C -0.054 4.054 13 C -0.178 4.178 14 C -0.072 4.072 15 C 0.517 3.483 16 O -0.492 6.492 17 N -0.641 5.641 18 C 0.248 3.752 19 C -0.227 4.227 20 C -0.053 4.053 21 O 0.091 5.909 22 N -0.398 5.398 23 C -0.057 4.057 24 C -0.192 4.192 25 H 0.270 0.730 26 H 0.127 0.873 27 H 0.105 0.895 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.417 0.583 31 H 0.191 0.809 32 H 0.220 0.780 33 H 0.109 0.891 34 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.041 -15.709 5.138 19.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.199 1.199 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.468 4.468 8 H 0.110 0.890 9 O -0.079 6.079 10 C 0.105 3.895 11 C -0.252 4.252 12 C -0.072 4.072 13 C -0.180 4.180 14 C -0.111 4.111 15 C 0.304 3.696 16 O -0.362 6.362 17 N -0.294 5.294 18 C -0.001 4.001 19 C -0.249 4.249 20 C -0.134 4.134 21 O 0.032 5.968 22 N -0.115 5.115 23 C -0.075 4.075 24 C -0.211 4.211 25 H 0.080 0.920 26 H 0.145 0.855 27 H 0.123 0.877 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.253 0.747 31 H 0.209 0.791 32 H 0.236 0.764 33 H 0.127 0.873 34 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 10.883 -15.908 5.199 19.964 hybrid contribution 0.234 1.256 -0.119 1.283 sum 11.117 -14.653 5.081 19.082 Atomic orbital electron populations 1.70039 1.05975 1.27719 1.45949 1.25296 0.95845 0.98857 0.96498 0.85708 0.78960 0.80048 0.78710 1.19861 1.20224 1.19163 1.21339 0.91827 0.80803 1.52836 0.89024 1.83975 1.34421 1.11500 1.78039 1.19395 0.90294 0.88036 0.91806 1.21107 0.93803 0.98792 1.11527 1.20514 0.98080 0.91724 0.96893 1.18552 0.93176 0.92473 1.13755 1.20378 1.01870 0.98713 0.90185 1.21471 0.76353 0.78676 0.93096 1.90692 1.48131 1.45773 1.51628 1.42883 1.54509 1.28654 1.03324 1.20761 0.98042 0.93369 0.87952 1.23143 1.07612 1.04964 0.89223 1.25992 0.97130 0.88674 1.01635 1.84791 1.57334 1.40127 1.14565 1.74023 1.23574 1.21891 0.92030 1.20405 0.92672 0.96787 0.97686 1.20160 0.99552 0.90248 1.11140 0.91984 0.85516 0.87738 0.88245 0.88211 0.74657 0.79147 0.76391 0.87288 0.86465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.30 13.67 55.48 0.76 -24.54 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 20.51 29.55 -169.99 -5.02 15.48 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 6 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.39 -10.97 9.49 30.88 0.29 -10.67 16 8 H 0.09 2.37 5.20 -52.48 -0.27 2.10 16 9 O -0.18 -5.04 9.76 0.06 0.00 -5.04 16 10 C 0.16 3.85 6.65 -39.11 -0.26 3.59 16 11 C -0.23 -5.06 9.17 -39.40 -0.36 -5.42 16 12 C -0.05 -0.97 9.69 -39.61 -0.38 -1.36 16 13 C -0.18 -2.91 4.38 -104.58 -0.46 -3.36 16 14 C -0.07 -0.80 5.83 -29.04 -0.17 -0.97 16 15 C 0.52 6.66 7.79 -10.98 -0.09 6.58 16 16 O -0.49 -8.33 13.32 5.56 0.07 -8.26 16 17 N -0.64 -6.90 5.42 -11.43 -0.06 -6.96 16 18 C 0.25 3.10 8.18 -154.82 -1.27 1.83 16 19 C -0.23 -2.70 9.86 -39.20 -0.39 -3.09 16 20 C -0.05 -0.46 12.28 29.67 0.36 -0.10 16 21 O 0.09 0.97 11.19 17.05 0.19 1.16 16 22 N -0.40 -4.91 12.10 31.19 0.38 -4.54 16 23 C -0.06 -1.00 9.69 -39.61 -0.38 -1.39 16 24 C -0.19 -4.06 9.99 -39.39 -0.39 -4.45 16 25 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 26 H 0.13 2.76 5.64 -52.48 -0.30 2.46 16 27 H 0.10 1.60 8.06 -52.48 -0.42 1.18 16 28 H 0.10 0.86 8.08 -51.93 -0.42 0.44 16 29 H 0.10 0.85 8.08 -51.93 -0.42 0.43 16 30 H 0.42 3.11 8.82 -40.82 -0.36 2.75 16 31 H 0.19 2.53 6.22 -52.49 -0.33 2.21 16 32 H 0.22 0.88 8.06 -52.48 -0.42 0.46 16 33 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 34 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 LS Contribution 307.41 15.07 4.63 4.63 Total: -1.00 -34.34 307.41 -5.56 -39.90 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -2.92 Total: 5.97 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: -3.59 Total: -17.83 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: 1.07 Total: -36.03 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.27 Total: -12.14 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -34.34 -5.56 -39.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179518982.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.922 kcal (2) G-P(sol) polarization free energy of solvation -34.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds