Wall clock time and date at job start Tue Mar 31 2020 06:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86807 * 119.99574 * 2 1 4 4 H 1.48493 * 109.46956 * 269.99654 * 3 2 1 5 5 H 1.48492 * 109.46992 * 29.99987 * 3 2 1 6 6 H 1.48495 * 109.46644 * 149.99821 * 3 2 1 7 7 C 1.38643 * 119.99859 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99874 * 180.02562 * 7 2 1 9 9 O 1.34831 * 120.00736 * 0.02562 * 7 2 1 10 10 C 1.35745 * 117.00312 * 185.05395 * 9 7 2 11 11 C 1.38877 * 120.07197 * 354.46843 * 10 9 7 12 12 C 1.38096 * 119.93329 * 180.02562 * 11 10 9 13 13 C 1.38304 * 120.06594 * 0.02562 * 12 11 10 14 14 C 1.50701 * 119.92625 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.47059 * 90.00766 * 14 13 12 16 16 O 1.21272 * 120.00237 * 359.97438 * 15 14 13 17 17 N 1.34780 * 119.99922 * 180.27713 * 15 14 13 18 18 C 1.39508 * 119.99909 * 179.72402 * 17 15 14 19 19 C 1.42025 * 126.89180 * 359.70274 * 18 17 15 20 20 C 1.35250 * 103.95219 * 179.91637 * 19 18 17 21 21 O 1.34089 * 106.61086 * 0.34536 * 20 19 18 22 22 N 1.20907 * 111.74543 * 359.76455 * 21 20 19 23 23 C 1.38298 * 120.14326 * 0.25695 * 13 12 11 24 24 C 1.38105 * 120.06444 * 359.45110 * 23 13 12 25 25 H 0.97000 * 120.00281 * 0.02562 * 1 2 3 26 26 H 1.08004 * 120.03543 * 359.97438 * 11 10 9 27 27 H 1.08004 * 119.96668 * 180.02562 * 12 11 10 28 28 H 1.09000 * 109.47468 * 330.00338 * 14 13 12 29 29 H 1.09001 * 109.47115 * 210.00399 * 14 13 12 30 30 H 0.96998 * 120.00268 * 359.71387 * 17 15 14 31 31 H 1.07997 * 128.02237 * 0.03484 * 19 18 17 32 32 H 1.08003 * 126.69163 * 180.11632 * 20 19 18 33 33 H 1.07994 * 119.96878 * 179.70329 * 23 13 12 34 34 H 1.07993 * 120.03458 * 180.27464 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6179 0.0000 4 1 2.4970 2.0465 -1.4000 5 1 1.4469 2.6527 0.7000 6 1 3.5470 1.4403 0.7001 7 6 2.0088 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3348 -2.3684 0.0005 10 6 2.0700 -3.5045 0.1076 11 6 3.4572 -3.4394 0.0952 12 6 4.2024 -4.5969 0.2038 13 6 3.5686 -5.8203 0.3243 14 6 4.3849 -7.0816 0.4420 15 6 4.6631 -7.3661 1.8955 16 8 4.2406 -6.6180 2.7515 17 7 5.3866 -8.4485 2.2439 18 6 5.6490 -8.7087 3.5891 19 6 5.2336 -7.9335 4.7043 20 6 5.7335 -8.6003 5.7694 21 8 6.3869 -9.6653 5.2827 22 7 6.3315 -9.7117 4.0758 23 6 2.1873 -5.8891 0.3311 24 6 1.4366 -4.7345 0.2289 25 1 -0.4850 0.8400 -0.0004 26 1 3.9528 -2.4845 -0.0001 27 1 5.2812 -4.5469 0.1946 28 1 5.3276 -6.9554 -0.0904 29 1 3.8313 -7.9144 0.0083 30 1 5.7248 -9.0467 1.5593 31 1 4.6517 -7.0237 4.7022 32 1 5.6299 -8.3263 6.8090 33 1 1.6953 -6.8463 0.4205 34 1 0.3580 -4.7884 0.2388 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179518982.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:23 Heat of formation + Delta-G solvation = 10.331535 kcal Electronic energy + Delta-G solvation = -21184.072878 eV Core-core repulsion = 17664.728878 eV Total energy + Delta-G solvation = -3519.344000 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.86175 -41.34352 -40.54465 -38.31577 -36.58753 -34.43007 -33.77040 -32.74054 -32.25923 -31.77292 -28.37246 -27.09766 -24.71940 -23.64055 -23.44937 -22.39617 -21.45924 -19.85118 -19.27636 -18.84044 -18.59533 -18.04931 -17.62225 -16.71639 -16.40328 -16.04271 -15.96155 -15.54135 -15.32626 -14.97364 -14.66380 -14.42665 -14.17300 -14.09570 -13.62409 -13.08548 -12.97468 -12.64439 -12.50945 -12.47950 -12.31977 -12.25705 -12.12862 -11.17935 -11.12568 -10.78369 -10.68253 -9.89326 -9.76166 -8.92364 -8.47743 -6.15994 0.46974 0.61948 0.62823 1.02229 1.34178 1.42785 1.51917 1.61552 1.83553 2.17395 2.44715 2.82211 3.14653 3.42275 3.52288 3.71797 3.83837 4.05049 4.16930 4.21862 4.29390 4.46092 4.59504 4.64436 4.70811 4.80403 4.96563 5.08578 5.14437 5.30090 5.34449 5.56135 5.72069 5.75954 6.02776 6.13874 6.26100 6.97006 6.99128 7.31069 7.78180 8.75697 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.028007 B = 0.003009 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.509077 B = 9304.669508 C = 9730.456945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.023 4.023 3 Si 1.019 2.981 4 H -0.261 1.261 5 H -0.271 1.271 6 H -0.254 1.254 7 C -0.414 4.414 8 H 0.101 0.899 9 O -0.233 6.233 10 C 0.115 3.885 11 C -0.245 4.245 12 C -0.056 4.056 13 C -0.150 4.150 14 C -0.068 4.068 15 C 0.521 3.479 16 O -0.540 6.540 17 N -0.625 5.625 18 C 0.231 3.769 19 C -0.264 4.264 20 C -0.019 4.019 21 O 0.090 5.910 22 N -0.412 5.412 23 C -0.054 4.054 24 C -0.207 4.207 25 H 0.273 0.727 26 H 0.117 0.883 27 H 0.140 0.860 28 H 0.139 0.861 29 H 0.141 0.859 30 H 0.434 0.566 31 H 0.174 0.826 32 H 0.266 0.734 33 H 0.149 0.851 34 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.921 -18.239 5.532 23.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.186 1.186 5 H -0.196 1.196 6 H -0.178 1.178 7 C -0.490 4.490 8 H 0.118 0.882 9 O -0.140 6.140 10 C 0.064 3.936 11 C -0.265 4.265 12 C -0.074 4.074 13 C -0.151 4.151 14 C -0.107 4.107 15 C 0.310 3.690 16 O -0.414 6.414 17 N -0.279 5.279 18 C -0.018 4.018 19 C -0.287 4.287 20 C -0.100 4.100 21 O 0.032 5.968 22 N -0.130 5.130 23 C -0.072 4.072 24 C -0.227 4.227 25 H 0.082 0.918 26 H 0.135 0.865 27 H 0.158 0.842 28 H 0.157 0.843 29 H 0.159 0.841 30 H 0.273 0.727 31 H 0.191 0.809 32 H 0.281 0.719 33 H 0.166 0.834 34 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 13.822 -18.539 5.572 23.786 hybrid contribution -0.511 1.619 -0.141 1.704 sum 13.312 -16.920 5.431 22.203 Atomic orbital electron populations 1.70187 1.08038 1.28807 1.48959 1.26600 0.96863 1.02756 0.95856 0.84586 0.77748 0.74525 0.79346 1.18566 1.19572 1.17798 1.21823 0.92499 0.81495 1.53189 0.88187 1.83937 1.36019 1.12632 1.81417 1.19961 0.91678 0.87958 0.93975 1.21230 0.93101 1.00078 1.12049 1.20949 0.99778 0.91049 0.95657 1.19156 0.93256 0.94237 1.08474 1.20512 1.03457 0.97058 0.89667 1.21617 0.75771 0.78446 0.93185 1.90714 1.50241 1.47512 1.52950 1.42656 1.53665 1.28274 1.03342 1.21027 0.98413 0.93676 0.88692 1.23135 1.09552 1.05506 0.90501 1.26730 0.93934 0.86482 1.02834 1.84766 1.57308 1.40622 1.14136 1.74028 1.24090 1.22137 0.92734 1.20893 0.93461 0.96972 0.95840 1.20448 0.99928 0.90701 1.11593 0.91824 0.86544 0.84216 0.84321 0.84080 0.72679 0.80865 0.71861 0.83359 0.87054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.42 13.67 21.61 0.30 -57.12 16 2 C -0.02 -1.36 5.49 84.83 0.47 -0.89 16 3 Si 1.02 43.45 29.55 68.60 2.03 45.48 16 4 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 5 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 6 H -0.25 -10.12 7.11 99.48 0.71 -9.42 16 7 C -0.41 -24.60 9.49 67.92 0.64 -23.95 16 8 H 0.10 5.47 5.20 -2.91 -0.02 5.45 16 9 O -0.23 -14.36 9.76 -22.70 -0.22 -14.58 16 10 C 0.11 5.83 6.65 22.58 0.15 5.98 16 11 C -0.25 -10.86 9.17 22.39 0.21 -10.66 16 12 C -0.06 -1.91 9.69 22.25 0.22 -1.69 16 13 C -0.15 -4.37 4.38 -19.83 -0.09 -4.46 16 14 C -0.07 -1.14 5.83 29.10 0.17 -0.97 16 15 C 0.52 11.54 7.79 87.66 0.68 12.23 16 16 O -0.54 -17.27 13.32 -3.00 -0.04 -17.31 16 17 N -0.63 -11.32 5.42 -309.52 -1.68 -13.00 16 18 C 0.23 5.24 8.18 134.11 1.10 6.34 16 19 C -0.26 -5.85 9.86 22.52 0.22 -5.63 16 20 C -0.02 -0.27 12.28 67.13 0.82 0.55 16 21 O 0.09 1.68 11.19 71.19 0.80 2.48 16 22 N -0.41 -9.18 12.10 -56.32 -0.68 -9.86 16 23 C -0.05 -1.77 9.69 22.25 0.22 -1.55 16 24 C -0.21 -8.98 9.99 22.39 0.22 -8.76 16 25 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 26 H 0.12 5.27 5.64 -2.91 -0.02 5.25 16 27 H 0.14 3.73 8.06 -2.91 -0.02 3.71 16 28 H 0.14 1.43 8.08 -2.39 -0.02 1.41 16 29 H 0.14 1.39 8.08 -2.39 -0.02 1.37 16 30 H 0.43 4.64 8.82 -92.71 -0.82 3.83 16 31 H 0.17 4.55 6.22 -2.91 -0.02 4.53 16 32 H 0.27 0.99 8.06 -2.91 -0.02 0.97 16 33 H 0.15 3.70 8.06 -2.91 -0.02 3.67 16 34 H 0.11 4.80 8.06 -2.91 -0.02 4.77 16 Total: -1.00 -83.15 307.41 5.88 -77.27 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: 0.35 Total: 20.11 kcal Atomic # 6 Polarization: -38.49 SS G_CDS: 5.03 Total: -33.46 kcal Atomic # 7 Polarization: -77.92 SS G_CDS: -2.06 Total: -79.99 kcal Atomic # 8 Polarization: -29.95 SS G_CDS: 0.53 Total: -29.42 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -83.15 5.88 -77.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179518982.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.605 kcal (2) G-P(sol) polarization free energy of solvation -83.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds