Wall clock time and date at job start Tue Mar 31 2020 05:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30910 * 1 3 3 Si 1.86802 * 119.99757 * 2 1 4 4 H 1.48501 * 109.47176 * 274.65421 * 3 2 1 5 5 H 1.48501 * 109.47269 * 34.65607 * 3 2 1 6 6 H 1.48503 * 109.46663 * 154.65843 * 3 2 1 7 7 C 1.39857 * 119.99602 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99878 * 162.12751 * 7 2 1 9 9 C 1.41135 * 120.00410 * 342.11845 * 7 2 1 10 10 C 1.40887 * 120.15494 * 155.08585 * 9 7 2 11 11 C 1.36344 * 119.83651 * 180.02562 * 10 9 7 12 12 C 1.39559 * 120.15832 * 0.25536 * 11 10 9 13 13 N 1.38861 * 119.83938 * 179.72212 * 12 11 10 14 14 C 1.46505 * 119.99831 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.46991 * 180.02562 * 14 13 12 16 16 C 1.38609 * 120.42251 * 104.72324 * 15 14 13 17 17 C 1.38676 * 118.43289 * 179.77874 * 16 15 14 18 18 C 1.38189 * 119.19204 * 0.47681 * 17 16 15 19 19 N 1.31872 * 120.78238 * 359.76436 * 18 17 16 20 20 C 1.31977 * 121.70532 * 0.02562 * 19 18 17 21 21 Cl 1.73610 * 119.63307 * 179.97438 * 20 19 18 22 22 C 1.39567 * 120.31713 * 359.48896 * 12 11 10 23 23 C 1.36338 * 120.16306 * 0.50951 * 22 12 11 24 24 H 0.96997 * 120.00042 * 359.97438 * 1 2 3 25 25 H 1.08000 * 120.08395 * 0.02562 * 10 9 7 26 26 H 1.07997 * 119.91639 * 179.97438 * 11 10 9 27 27 H 0.96999 * 120.00000 * 0.02562 * 13 12 11 28 28 H 1.08999 * 109.47219 * 300.00398 * 14 13 12 29 29 H 1.09003 * 109.47025 * 60.00647 * 14 13 12 30 30 H 1.07998 * 120.78347 * 0.02562 * 16 15 14 31 31 H 1.08006 * 120.40026 * 180.23739 * 17 16 15 32 32 H 1.08001 * 119.60656 * 179.78359 * 18 17 16 33 33 H 1.08003 * 119.91795 * 180.23652 * 22 12 11 34 34 H 1.07993 * 120.08597 * 179.72069 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 2.3921 2.1033 -1.3955 5 1 1.4931 2.6223 0.7961 6 1 3.5864 1.4137 0.5993 7 6 2.0083 -1.2112 -0.0005 8 1 3.0493 -1.2337 -0.2876 9 6 1.3538 -2.4042 0.3742 10 6 1.8228 -3.6466 -0.0962 11 6 1.1852 -4.7949 0.2695 12 6 0.0674 -4.7412 1.1033 13 7 -0.5804 -5.9145 1.4670 14 6 -1.7538 -5.8622 2.3426 15 6 -2.2640 -7.2597 2.5827 16 6 -2.0368 -7.8911 3.7955 17 6 -2.5289 -9.1754 3.9736 18 6 -3.2160 -9.7832 2.9402 19 7 -3.4099 -9.1550 1.7971 20 6 -2.9599 -7.9311 1.5932 21 17 -3.2453 -7.1548 0.0668 22 6 -0.3996 -3.5144 1.5774 23 6 0.2280 -2.3581 1.2200 24 1 -0.4850 0.8400 0.0004 25 1 2.6852 -3.6893 -0.7449 26 1 1.5434 -5.7480 -0.0907 27 1 -0.2555 -6.7686 1.1418 28 1 -1.4771 -5.4082 3.2942 29 1 -2.5342 -5.2664 1.8691 30 1 -1.4930 -7.3932 4.5845 31 1 -2.3735 -9.6956 4.9073 32 1 -3.5990 -10.7846 3.0704 33 1 -1.2630 -3.4807 2.2254 34 1 -0.1372 -1.4091 1.5839 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185147795.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:19 Heat of formation + Delta-G solvation = 51.793115 kcal Electronic energy + Delta-G solvation = -19019.249949 eV Core-core repulsion = 15942.413022 eV Total energy + Delta-G solvation = -3076.836926 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.52354 -37.94489 -36.64499 -35.45373 -33.50249 -32.45241 -31.33751 -29.45361 -28.63517 -26.20893 -24.00718 -23.83560 -22.44656 -20.90877 -19.93852 -17.60425 -17.19476 -16.97012 -16.43803 -15.44192 -15.06630 -14.80210 -14.40499 -13.94397 -13.72693 -13.43742 -13.31608 -12.66674 -12.60153 -12.14273 -11.80541 -11.79176 -11.56971 -11.33464 -11.13422 -11.00004 -10.81497 -10.45939 -10.12486 -9.82421 -9.70164 -9.31879 -9.23309 -9.06699 -8.53888 -7.48432 -6.63306 -6.39202 -4.02544 0.64019 0.88717 1.78208 2.92205 3.11141 3.15641 3.20558 3.34544 3.35963 4.06398 4.16618 4.39712 4.48775 4.62056 4.69468 4.77961 4.94389 5.18978 5.49958 5.72902 5.82992 5.85186 6.04494 6.20484 6.28456 6.32556 6.90511 6.94374 7.20905 7.36485 7.45505 7.54538 7.69586 7.83899 8.16097 8.28675 8.48251 8.67684 8.79646 9.07216 9.15902 10.38437 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.034382 B = 0.003315 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.187108 B = 8443.574426 C = 8599.125830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.075 3.925 3 Si 0.901 3.099 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.467 4.467 8 H 0.072 0.928 9 C 0.076 3.924 10 C -0.186 4.186 11 C -0.156 4.156 12 C 0.094 3.906 13 N -0.753 5.753 14 C 0.180 3.820 15 C -0.128 4.128 16 C -0.049 4.049 17 C -0.174 4.174 18 C 0.114 3.886 19 N -0.482 5.482 20 C 0.184 3.816 21 Cl -0.013 7.013 22 C -0.163 4.163 23 C -0.124 4.124 24 H 0.276 0.724 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.384 0.616 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.146 0.854 31 H 0.142 0.858 32 H 0.164 0.836 33 H 0.087 0.913 34 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.309 -14.277 7.878 17.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.140 4.140 3 Si 0.726 3.274 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.498 4.498 8 H 0.090 0.910 9 C 0.073 3.927 10 C -0.207 4.207 11 C -0.178 4.178 12 C -0.002 4.002 13 N -0.389 5.389 14 C 0.054 3.946 15 C -0.132 4.132 16 C -0.075 4.075 17 C -0.194 4.194 18 C -0.044 4.044 19 N -0.193 5.193 20 C 0.019 3.981 21 Cl 0.015 6.985 22 C -0.185 4.185 23 C -0.144 4.144 24 H 0.086 0.914 25 H 0.109 0.891 26 H 0.103 0.897 27 H 0.216 0.784 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.164 0.836 31 H 0.160 0.840 32 H 0.181 0.819 33 H 0.106 0.894 34 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.123 -14.338 7.155 17.536 hybrid contribution 0.769 0.857 0.334 1.199 sum -6.354 -13.481 7.489 16.679 Atomic orbital electron populations 1.69860 1.07345 1.28578 1.37659 1.25789 0.94645 1.00858 0.92733 0.86422 0.80747 0.81384 0.78807 1.19877 1.20297 1.18684 1.19363 0.97884 0.91378 1.41205 0.90982 1.17490 0.92415 0.91967 0.90864 1.20544 1.02761 0.92607 1.04746 1.19790 0.97835 0.97057 1.03123 1.17280 0.95595 0.85335 1.02037 1.43716 1.31878 1.06171 1.57151 1.19863 0.89623 0.89640 0.95429 1.20852 0.99686 0.98779 0.93871 1.21622 0.95582 0.94116 0.96225 1.22238 0.99925 0.96110 1.01099 1.22700 0.94849 0.99481 0.87336 1.67093 1.19900 1.08167 1.24110 1.21734 0.96027 0.90946 0.89373 1.98455 1.94680 1.77597 1.27729 1.20073 1.01545 0.91922 1.04939 1.20915 0.98216 0.96391 0.98919 0.91352 0.89078 0.89651 0.78357 0.92024 0.91580 0.83581 0.83975 0.81914 0.89438 0.86435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.45 10.98 55.54 0.61 -20.84 16 2 C 0.07 1.93 5.13 -17.34 -0.09 1.85 16 3 Si 0.90 19.23 29.60 -169.99 -5.03 14.20 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 6 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.47 -12.70 9.03 -37.88 -0.34 -13.04 16 8 H 0.07 1.89 7.91 -52.48 -0.41 1.48 16 9 C 0.08 2.04 5.57 -106.79 -0.59 1.44 16 10 C -0.19 -4.61 9.74 -39.26 -0.38 -5.00 16 11 C -0.16 -3.49 9.82 -39.77 -0.39 -3.88 16 12 C 0.09 2.01 6.67 -83.69 -0.56 1.45 16 13 N -0.75 -12.85 5.59 -59.67 -0.33 -13.18 16 14 C 0.18 2.62 4.37 -5.19 -0.02 2.59 16 15 C -0.13 -1.59 5.27 -104.44 -0.55 -2.14 16 16 C -0.05 -0.47 9.81 -39.28 -0.39 -0.86 16 17 C -0.17 -1.38 10.11 -39.44 -0.40 -1.78 16 18 C 0.11 1.04 11.18 -17.55 -0.20 0.85 16 19 N -0.48 -6.11 10.34 -10.36 -0.11 -6.21 16 20 C 0.18 2.48 7.27 -17.45 -0.13 2.35 16 21 Cl -0.01 -0.19 27.72 -51.86 -1.44 -1.63 16 22 C -0.16 -3.74 9.23 -39.77 -0.37 -4.11 16 23 C -0.12 -3.23 8.63 -39.26 -0.34 -3.57 16 24 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 25 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 26 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 27 H 0.38 6.18 8.46 -40.82 -0.35 5.83 16 28 H 0.06 0.86 7.78 -51.93 -0.40 0.45 16 29 H 0.07 1.04 7.39 -51.93 -0.38 0.65 16 30 H 0.15 1.13 8.05 -52.49 -0.42 0.71 16 31 H 0.14 0.67 8.06 -52.48 -0.42 0.25 16 32 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 33 H 0.09 1.81 6.68 -52.48 -0.35 1.46 16 34 H 0.12 3.17 6.18 -52.49 -0.32 2.85 16 LS Contribution 310.35 15.07 4.68 4.68 Total: -1.00 -29.34 310.35 -9.84 -39.17 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -3.47 Total: 7.66 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: -4.74 Total: -23.85 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: 0.17 Total: -40.23 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.03 Total: 14.20 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -1.44 Total: -1.63 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.34 -9.84 -39.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185147795.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.967 kcal (2) G-P(sol) polarization free energy of solvation -29.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds