Wall clock time and date at job start Tue Mar 31 2020 05:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30910 * 1 3 3 Si 1.86802 * 119.99757 * 2 1 4 4 H 1.48501 * 109.47176 * 274.65421 * 3 2 1 5 5 H 1.48501 * 109.47269 * 34.65607 * 3 2 1 6 6 H 1.48503 * 109.46663 * 154.65843 * 3 2 1 7 7 C 1.39857 * 119.99602 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99878 * 162.12751 * 7 2 1 9 9 C 1.41135 * 120.00410 * 342.11845 * 7 2 1 10 10 C 1.40887 * 120.15494 * 155.08585 * 9 7 2 11 11 C 1.36344 * 119.83651 * 180.02562 * 10 9 7 12 12 C 1.39559 * 120.15832 * 0.25536 * 11 10 9 13 13 N 1.38861 * 119.83938 * 179.72212 * 12 11 10 14 14 C 1.46505 * 119.99831 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.46991 * 180.02562 * 14 13 12 16 16 C 1.38609 * 120.42251 * 104.72324 * 15 14 13 17 17 C 1.38676 * 118.43289 * 179.77874 * 16 15 14 18 18 C 1.38189 * 119.19204 * 0.47681 * 17 16 15 19 19 N 1.31872 * 120.78238 * 359.76436 * 18 17 16 20 20 C 1.31977 * 121.70532 * 0.02562 * 19 18 17 21 21 Cl 1.73610 * 119.63307 * 179.97438 * 20 19 18 22 22 C 1.39567 * 120.31713 * 359.48896 * 12 11 10 23 23 C 1.36338 * 120.16306 * 0.50951 * 22 12 11 24 24 H 0.96997 * 120.00042 * 359.97438 * 1 2 3 25 25 H 1.08000 * 120.08395 * 0.02562 * 10 9 7 26 26 H 1.07997 * 119.91639 * 179.97438 * 11 10 9 27 27 H 0.96999 * 120.00000 * 0.02562 * 13 12 11 28 28 H 1.08999 * 109.47219 * 300.00398 * 14 13 12 29 29 H 1.09003 * 109.47025 * 60.00647 * 14 13 12 30 30 H 1.07998 * 120.78347 * 0.02562 * 16 15 14 31 31 H 1.08006 * 120.40026 * 180.23739 * 17 16 15 32 32 H 1.08001 * 119.60656 * 179.78359 * 18 17 16 33 33 H 1.08003 * 119.91795 * 180.23652 * 22 12 11 34 34 H 1.07993 * 120.08597 * 179.72069 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 2.3921 2.1033 -1.3955 5 1 1.4931 2.6223 0.7961 6 1 3.5864 1.4137 0.5993 7 6 2.0083 -1.2112 -0.0005 8 1 3.0493 -1.2337 -0.2876 9 6 1.3538 -2.4042 0.3742 10 6 1.8228 -3.6466 -0.0962 11 6 1.1852 -4.7949 0.2695 12 6 0.0674 -4.7412 1.1033 13 7 -0.5804 -5.9145 1.4670 14 6 -1.7538 -5.8622 2.3426 15 6 -2.2640 -7.2597 2.5827 16 6 -2.0368 -7.8911 3.7955 17 6 -2.5289 -9.1754 3.9736 18 6 -3.2160 -9.7832 2.9402 19 7 -3.4099 -9.1550 1.7971 20 6 -2.9599 -7.9311 1.5932 21 17 -3.2453 -7.1548 0.0668 22 6 -0.3996 -3.5144 1.5774 23 6 0.2280 -2.3581 1.2200 24 1 -0.4850 0.8400 0.0004 25 1 2.6852 -3.6893 -0.7449 26 1 1.5434 -5.7480 -0.0907 27 1 -0.2555 -6.7686 1.1418 28 1 -1.4771 -5.4082 3.2942 29 1 -2.5342 -5.2664 1.8691 30 1 -1.4930 -7.3932 4.5845 31 1 -2.3735 -9.6956 4.9073 32 1 -3.5990 -10.7846 3.0704 33 1 -1.2630 -3.4807 2.2254 34 1 -0.1372 -1.4091 1.5839 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185147795.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:19 Heat of formation + Delta-G solvation = 35.120413 kcal Electronic energy + Delta-G solvation = -19019.972931 eV Core-core repulsion = 15942.413022 eV Total energy + Delta-G solvation = -3077.559909 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.36602 -39.69740 -37.64957 -36.94542 -35.12472 -33.58037 -32.40091 -31.32856 -30.29917 -27.56273 -25.68602 -24.65508 -23.61219 -22.62597 -21.65949 -19.13333 -18.45208 -17.92492 -17.83283 -16.82870 -16.67086 -15.87325 -15.64758 -15.36595 -14.92408 -14.69821 -14.42510 -14.31888 -14.07112 -13.74429 -13.55436 -13.09135 -12.79733 -12.76314 -12.70410 -12.53978 -12.27111 -12.16476 -11.57454 -11.21670 -11.07636 -10.89783 -10.65863 -10.29381 -9.95914 -9.38099 -8.53417 -8.15747 -5.99205 -0.17628 0.11562 0.84171 1.12767 1.20656 1.41009 1.53534 1.60447 2.28626 2.51570 2.85960 3.04425 3.36822 3.66432 3.78441 3.87993 3.97444 4.23435 4.43618 4.46230 4.52004 4.62705 4.73964 5.01027 5.05442 5.12052 5.16799 5.29140 5.47277 5.51403 5.69565 5.81118 5.97361 6.20740 6.40781 6.65959 6.68034 6.87241 7.10310 7.11701 7.29047 8.49904 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.034382 B = 0.003315 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.187108 B = 8443.574426 C = 8599.125830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.032 3.968 3 Si 0.975 3.025 4 H -0.267 1.267 5 H -0.268 1.268 6 H -0.261 1.261 7 C -0.506 4.506 8 H 0.067 0.933 9 C 0.036 3.964 10 C -0.195 4.195 11 C -0.165 4.165 12 C 0.118 3.882 13 N -0.741 5.741 14 C 0.181 3.819 15 C -0.140 4.140 16 C -0.047 4.047 17 C -0.154 4.154 18 C 0.113 3.887 19 N -0.509 5.509 20 C 0.166 3.834 21 Cl -0.042 7.042 22 C -0.172 4.172 23 C -0.142 4.142 24 H 0.282 0.718 25 H 0.095 0.905 26 H 0.113 0.887 27 H 0.392 0.608 28 H 0.073 0.927 29 H 0.052 0.948 30 H 0.169 0.831 31 H 0.185 0.815 32 H 0.198 0.802 33 H 0.107 0.893 34 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.454 -16.319 9.849 20.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.180 4.180 3 Si 0.797 3.203 4 H -0.192 1.192 5 H -0.193 1.193 6 H -0.185 1.185 7 C -0.538 4.538 8 H 0.085 0.915 9 C 0.033 3.967 10 C -0.215 4.215 11 C -0.187 4.187 12 C 0.019 3.981 13 N -0.376 5.376 14 C 0.056 3.944 15 C -0.144 4.144 16 C -0.074 4.074 17 C -0.174 4.174 18 C -0.044 4.044 19 N -0.221 5.221 20 C 0.002 3.998 21 Cl -0.013 7.013 22 C -0.194 4.194 23 C -0.162 4.162 24 H 0.092 0.908 25 H 0.113 0.887 26 H 0.131 0.869 27 H 0.226 0.774 28 H 0.091 0.909 29 H 0.070 0.930 30 H 0.186 0.814 31 H 0.202 0.798 32 H 0.214 0.786 33 H 0.125 0.875 34 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.287 -16.427 9.135 20.159 hybrid contribution 0.712 1.173 -0.158 1.381 sum -6.575 -15.254 8.977 18.881 Atomic orbital electron populations 1.69924 1.08719 1.29728 1.38616 1.26594 0.95439 1.04042 0.91886 0.85308 0.79215 0.76765 0.79037 1.19191 1.19258 1.18490 1.19586 0.97960 0.92806 1.43422 0.91521 1.17803 0.93632 0.92933 0.92294 1.20735 1.03110 0.92894 1.04803 1.20061 0.97980 0.97489 1.03162 1.17348 0.94601 0.86294 0.99822 1.43746 1.32035 1.05023 1.56811 1.19898 0.88075 0.91499 0.94960 1.20647 1.00897 0.97742 0.95098 1.21964 0.95189 0.94822 0.95394 1.22682 0.97464 0.95119 1.02092 1.23412 0.94023 1.00591 0.86410 1.67063 1.20851 1.08057 1.26090 1.21708 0.97586 0.91729 0.88787 1.98438 1.94984 1.78226 1.29689 1.20230 1.02039 0.91686 1.05411 1.20850 0.98851 0.96722 0.99795 0.90806 0.88709 0.86877 0.77428 0.90857 0.92998 0.81351 0.79784 0.78557 0.87465 0.88318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.28 10.98 21.81 0.24 -46.04 16 2 C 0.03 1.71 5.13 85.22 0.44 2.15 16 3 Si 0.98 40.36 29.60 68.60 2.03 42.39 16 4 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 5 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 6 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 7 C -0.51 -28.67 9.03 23.37 0.21 -28.46 16 8 H 0.07 3.67 7.91 -2.91 -0.02 3.65 16 9 C 0.04 2.02 5.57 -21.27 -0.12 1.91 16 10 C -0.20 -9.85 9.74 22.48 0.22 -9.63 16 11 C -0.16 -7.26 9.82 22.15 0.22 -7.04 16 12 C 0.12 4.96 6.67 38.67 0.26 5.22 16 13 N -0.74 -24.09 5.59 -342.70 -1.92 -26.00 16 14 C 0.18 4.96 4.37 85.63 0.37 5.33 16 15 C -0.14 -3.17 5.27 -19.75 -0.10 -3.28 16 16 C -0.05 -0.73 9.81 22.46 0.22 -0.51 16 17 C -0.15 -1.68 10.11 22.36 0.23 -1.46 16 18 C 0.11 1.63 11.18 84.67 0.95 2.58 16 19 N -0.51 -11.86 10.34 -186.69 -1.93 -13.79 16 20 C 0.17 4.24 7.27 84.70 0.62 4.86 16 21 Cl -0.04 -1.22 27.72 -2.72 -0.08 -1.30 16 22 C -0.17 -7.91 9.23 22.15 0.20 -7.71 16 23 C -0.14 -7.64 8.63 22.47 0.19 -7.45 16 24 H 0.28 14.10 8.30 -92.71 -0.77 13.33 16 25 H 0.09 4.56 8.06 -2.91 -0.02 4.54 16 26 H 0.11 4.30 8.06 -2.91 -0.02 4.27 16 27 H 0.39 11.81 8.46 -92.71 -0.78 11.03 16 28 H 0.07 1.87 7.78 -2.39 -0.02 1.85 16 29 H 0.05 1.60 7.39 -2.39 -0.02 1.58 16 30 H 0.17 1.82 8.05 -2.91 -0.02 1.79 16 31 H 0.18 0.51 8.06 -2.91 -0.02 0.49 16 32 H 0.20 1.37 8.06 -2.91 -0.02 1.35 16 33 H 0.11 4.42 6.68 -2.91 -0.02 4.40 16 34 H 0.10 5.59 6.18 -2.91 -0.02 5.58 16 Total: -1.00 -66.69 310.35 2.60 -64.09 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: 0.35 Total: 24.15 kcal Atomic # 6 Polarization: -47.40 SS G_CDS: 3.90 Total: -43.50 kcal Atomic # 7 Polarization: -82.22 SS G_CDS: -3.61 Total: -85.83 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 2.03 Total: 42.39 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -0.08 Total: -1.30 kcal Total: -66.69 2.60 -64.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185147795.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.212 kcal (2) G-P(sol) polarization free energy of solvation -66.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds