Wall clock time and date at job start Tue Mar 31 2020 05:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37928 * 120.07816 * 2 1 4 4 C 1.38403 * 120.14615 * 179.72231 * 3 2 1 5 5 C 1.38445 * 120.30444 * 0.55467 * 4 3 2 6 6 C 1.37882 * 120.14809 * 359.72485 * 5 4 3 7 7 C 1.39661 * 120.07160 * 180.27681 * 2 1 3 8 8 C 1.47945 * 120.15244 * 0.02562 * 7 2 1 9 9 C 1.37318 * 122.59392 * 173.45923 * 8 7 2 10 10 S 1.71027 * 108.93269 * 179.90373 * 9 8 7 11 11 C 1.75958 * 90.64474 * 0.30075 * 10 9 8 12 12 N 1.37410 * 125.20006 * 179.78106 * 11 10 9 13 13 C 1.34779 * 119.99861 * 0.04764 * 12 11 10 14 14 O 1.21961 * 119.99695 * 359.97438 * 13 12 11 15 15 C 1.40445 * 120.00050 * 179.97438 * 13 12 11 16 16 H 1.08003 * 120.00035 * 6.70607 * 15 13 12 17 17 C 1.40054 * 119.99851 * 186.70840 * 15 13 12 18 18 N 1.30685 * 120.00252 * 353.28351 * 17 15 13 19 19 Si 1.86802 * 119.99743 * 173.28038 * 17 15 13 20 20 H 1.48500 * 109.46664 * 94.97991 * 19 17 15 21 21 H 1.48507 * 109.46887 * 214.97735 * 19 17 15 22 22 H 1.48492 * 109.47281 * 334.98028 * 19 17 15 23 23 N 1.30367 * 109.60653 * 359.82484 * 11 10 9 24 24 H 1.09007 * 109.47296 * 262.87639 * 1 2 3 25 25 H 1.09002 * 109.47179 * 142.87922 * 1 2 3 26 26 H 1.09002 * 109.47060 * 22.87626 * 1 2 3 27 27 H 1.07996 * 119.92298 * 359.97438 * 3 2 1 28 28 H 1.08005 * 119.84607 * 180.25713 * 4 3 2 29 29 H 1.07995 * 119.92930 * 179.74598 * 5 4 3 30 30 H 1.08002 * 120.07659 * 179.97438 * 6 5 4 31 31 H 1.07997 * 125.53282 * 0.02678 * 9 8 7 32 32 H 0.97006 * 120.00302 * 180.02562 * 12 11 10 33 33 H 0.96991 * 119.99998 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1935 0.0000 4 6 3.5823 1.1952 0.0058 5 6 4.2823 0.0008 0.0001 6 6 3.6038 -1.1995 -0.0057 7 6 2.2068 -1.2086 -0.0058 8 6 1.4721 -2.4927 -0.0126 9 6 2.1024 -3.7049 -0.1503 10 16 0.9290 -4.9484 -0.1083 11 6 -0.3534 -3.7591 0.0843 12 7 -1.6922 -4.0485 0.1929 13 6 -2.1100 -5.3294 0.1559 14 8 -1.2996 -6.2315 0.0255 15 6 -3.4784 -5.6253 0.2674 16 1 -4.2049 -4.8262 0.2738 17 6 -3.9008 -6.9566 0.3704 18 7 -3.0383 -7.9285 0.2312 19 14 -5.6972 -7.3431 0.7067 20 1 -6.3991 -7.5908 -0.5782 21 1 -5.7913 -8.5526 1.5634 22 1 -6.3290 -6.1934 1.4024 23 7 0.1607 -2.5613 0.1073 24 1 -0.3634 -0.1274 1.0198 25 1 -0.3633 -0.8194 -0.6202 26 1 -0.3633 0.9469 -0.3995 27 1 1.6583 2.1288 -0.0004 28 1 4.1186 2.1326 0.0100 29 1 5.3622 0.0092 0.0005 30 1 4.1511 -2.1306 -0.0106 31 1 3.1666 -3.8496 -0.2644 32 1 -2.3368 -3.3310 0.2966 33 1 -3.3308 -8.8505 0.3029 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185709141.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:28 Heat of formation + Delta-G solvation = 29.313920 kcal Electronic energy + Delta-G solvation = -19289.203469 eV Core-core repulsion = 16213.435478 eV Total energy + Delta-G solvation = -3075.767991 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.77343 -38.60244 -37.51893 -33.84476 -32.73350 -32.49542 -31.21476 -28.46881 -27.19036 -26.30886 -24.52941 -22.19369 -21.33076 -20.38952 -19.61690 -17.66365 -16.98614 -16.07561 -15.94497 -15.71567 -14.90009 -14.59505 -14.40652 -14.24988 -13.61481 -13.47185 -12.94928 -12.86531 -12.50771 -12.29937 -11.86568 -11.78432 -11.60773 -11.37963 -11.27047 -10.91844 -10.85093 -10.55931 -10.31635 -10.04270 -9.17727 -8.93351 -8.82900 -8.53042 -8.25378 -8.10749 -6.94037 -6.66313 -5.19808 1.04940 1.54840 1.87082 2.02682 2.84929 2.92556 3.01746 3.05879 3.38377 3.75869 4.06937 4.12345 4.23733 4.95294 5.02618 5.04804 5.18400 5.39522 5.48145 5.58584 5.77154 5.85505 5.98645 6.10718 6.15491 6.21715 6.45688 6.59723 6.62975 6.76896 6.94769 7.00008 7.17896 7.47659 7.54482 7.73468 8.38911 8.52888 8.92556 10.00100 10.22401 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.037231 B = 0.003769 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.890349 B = 7428.171909 C = 8152.852015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.056 4.056 3 C -0.128 4.128 4 C -0.123 4.123 5 C -0.132 4.132 6 C -0.104 4.104 7 C -0.008 4.008 8 C 0.120 3.880 9 C -0.386 4.386 10 S 0.260 5.740 11 C 0.293 3.707 12 N -0.634 5.634 13 C 0.529 3.471 14 O -0.551 6.551 15 C -0.521 4.521 16 H 0.078 0.922 17 C 0.086 3.914 18 N -0.734 5.734 19 Si 0.919 3.081 20 H -0.268 1.268 21 H -0.274 1.274 22 H -0.260 1.260 23 N -0.531 5.531 24 H 0.068 0.932 25 H 0.100 0.900 26 H 0.045 0.955 27 H 0.119 0.881 28 H 0.117 0.883 29 H 0.119 0.881 30 H 0.123 0.877 31 H 0.161 0.839 32 H 0.406 0.594 33 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.114 10.942 -0.126 13.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.057 4.057 3 C -0.146 4.146 4 C -0.141 4.141 5 C -0.150 4.150 6 C -0.124 4.124 7 C -0.011 4.011 8 C -0.015 4.015 9 C -0.529 4.529 10 S 0.513 5.487 11 C -0.075 4.075 12 N -0.282 5.282 13 C 0.341 3.659 14 O -0.436 6.436 15 C -0.556 4.556 16 H 0.096 0.904 17 C -0.139 4.139 18 N -0.361 5.361 19 Si 0.743 3.257 20 H -0.193 1.193 21 H -0.199 1.199 22 H -0.184 1.184 23 N -0.256 5.256 24 H 0.087 0.913 25 H 0.118 0.882 26 H 0.064 0.936 27 H 0.137 0.863 28 H 0.135 0.865 29 H 0.137 0.863 30 H 0.141 0.859 31 H 0.178 0.822 32 H 0.243 0.757 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.218 9.288 -0.222 11.765 hybrid contribution -0.559 1.146 0.257 1.301 sum 6.659 10.434 0.035 12.378 Atomic orbital electron populations 1.21023 0.90233 1.02088 1.03436 1.20151 0.96941 0.91701 0.96926 1.20980 0.94150 0.97332 1.02163 1.21147 0.94252 0.97798 1.00945 1.20938 0.99502 0.92320 1.02203 1.21168 0.92988 0.98201 0.99994 1.18204 0.92024 0.90327 1.00512 1.18562 0.87674 0.92053 1.03244 1.27316 1.06495 0.99505 1.19618 1.85130 0.92403 1.04924 1.66266 1.24617 0.92938 0.91567 0.98411 1.43520 1.01322 1.11836 1.71517 1.17005 0.91032 0.78354 0.79552 1.90633 1.54626 1.42600 1.55701 1.19691 0.91101 0.93712 1.51085 0.90396 1.25796 0.99950 0.95614 0.92522 1.70006 1.35501 1.00449 1.30095 0.86141 0.81352 0.79025 0.79218 1.19330 1.19934 1.18366 1.66979 1.10763 1.20504 1.27329 0.91294 0.88186 0.93595 0.86275 0.86494 0.86267 0.85949 0.82182 0.75747 0.91081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.67 8.70 36.00 0.31 -1.36 16 2 C -0.06 -0.86 5.92 -104.21 -0.62 -1.48 16 3 C -0.13 -1.65 9.66 -39.63 -0.38 -2.04 16 4 C -0.12 -1.43 10.04 -39.44 -0.40 -1.83 16 5 C -0.13 -1.58 10.03 -39.64 -0.40 -1.97 16 6 C -0.10 -1.46 9.49 -39.16 -0.37 -1.83 16 7 C -0.01 -0.14 5.88 -104.84 -0.62 -0.75 16 8 C 0.12 2.26 6.56 -84.21 -0.55 1.70 16 9 C -0.39 -6.97 10.42 30.40 0.32 -6.65 16 10 S 0.26 5.37 20.22 -107.50 -2.17 3.20 16 11 C 0.29 6.31 8.32 -88.28 -0.73 5.57 16 12 N -0.63 -13.96 5.33 -14.99 -0.08 -14.04 16 13 C 0.53 13.66 7.47 -15.43 -0.12 13.54 16 14 O -0.55 -15.66 12.32 4.95 0.06 -15.60 16 15 C -0.52 -13.10 9.23 -38.07 -0.35 -13.45 16 16 H 0.08 1.77 7.86 -52.48 -0.41 1.35 16 17 C 0.09 2.14 5.49 -17.36 -0.10 2.04 16 18 N -0.73 -19.54 11.73 55.55 0.65 -18.89 16 19 Si 0.92 17.94 29.56 -169.99 -5.03 12.92 16 20 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 21 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 22 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 23 N -0.53 -10.59 6.91 -10.30 -0.07 -10.66 16 24 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 25 H 0.10 1.71 5.74 -51.93 -0.30 1.41 16 26 H 0.05 0.58 8.04 -51.93 -0.42 0.16 16 27 H 0.12 1.27 8.05 -52.49 -0.42 0.84 16 28 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 29 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 30 H 0.12 1.53 6.67 -52.49 -0.35 1.18 16 31 H 0.16 2.42 6.91 -52.49 -0.36 2.06 16 32 H 0.41 7.80 8.77 -40.82 -0.36 7.44 16 33 H 0.28 6.65 8.29 -40.82 -0.34 6.31 16 LS Contribution 299.18 15.07 4.51 4.51 Total: -1.00 -29.36 299.18 -9.15 -38.51 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -3.02 Total: 8.56 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: -4.00 Total: -8.51 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: 0.50 Total: -43.59 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: 0.06 Total: -15.60 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.03 Total: 12.92 kcal Atomic # 16 Polarization: 5.37 SS G_CDS: -2.17 Total: 3.20 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.36 -9.15 -38.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185709141.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.826 kcal (2) G-P(sol) polarization free energy of solvation -29.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds