Wall clock time and date at job start Tue Mar 31 2020 05:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37928 * 120.07816 * 2 1 4 4 C 1.38403 * 120.14615 * 179.72231 * 3 2 1 5 5 C 1.38445 * 120.30444 * 0.55467 * 4 3 2 6 6 C 1.37882 * 120.14809 * 359.72485 * 5 4 3 7 7 C 1.39661 * 120.07160 * 180.27681 * 2 1 3 8 8 C 1.47945 * 120.15244 * 0.02562 * 7 2 1 9 9 C 1.37318 * 122.59392 * 173.45923 * 8 7 2 10 10 S 1.71027 * 108.93269 * 179.90373 * 9 8 7 11 11 C 1.75958 * 90.64474 * 0.30075 * 10 9 8 12 12 N 1.37410 * 125.20006 * 179.78106 * 11 10 9 13 13 C 1.34779 * 119.99861 * 0.04764 * 12 11 10 14 14 O 1.21961 * 119.99695 * 359.97438 * 13 12 11 15 15 C 1.40445 * 120.00050 * 179.97438 * 13 12 11 16 16 H 1.08003 * 120.00035 * 6.70607 * 15 13 12 17 17 C 1.40054 * 119.99851 * 186.70840 * 15 13 12 18 18 N 1.30685 * 120.00252 * 353.28351 * 17 15 13 19 19 Si 1.86802 * 119.99743 * 173.28038 * 17 15 13 20 20 H 1.48500 * 109.46664 * 94.97991 * 19 17 15 21 21 H 1.48507 * 109.46887 * 214.97735 * 19 17 15 22 22 H 1.48492 * 109.47281 * 334.98028 * 19 17 15 23 23 N 1.30367 * 109.60653 * 359.82484 * 11 10 9 24 24 H 1.09007 * 109.47296 * 262.87639 * 1 2 3 25 25 H 1.09002 * 109.47179 * 142.87922 * 1 2 3 26 26 H 1.09002 * 109.47060 * 22.87626 * 1 2 3 27 27 H 1.07996 * 119.92298 * 359.97438 * 3 2 1 28 28 H 1.08005 * 119.84607 * 180.25713 * 4 3 2 29 29 H 1.07995 * 119.92930 * 179.74598 * 5 4 3 30 30 H 1.08002 * 120.07659 * 179.97438 * 6 5 4 31 31 H 1.07997 * 125.53282 * 0.02678 * 9 8 7 32 32 H 0.97006 * 120.00302 * 180.02562 * 12 11 10 33 33 H 0.96991 * 119.99998 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1935 0.0000 4 6 3.5823 1.1952 0.0058 5 6 4.2823 0.0008 0.0001 6 6 3.6038 -1.1995 -0.0057 7 6 2.2068 -1.2086 -0.0058 8 6 1.4721 -2.4927 -0.0126 9 6 2.1024 -3.7049 -0.1503 10 16 0.9290 -4.9484 -0.1083 11 6 -0.3534 -3.7591 0.0843 12 7 -1.6922 -4.0485 0.1929 13 6 -2.1100 -5.3294 0.1559 14 8 -1.2996 -6.2315 0.0255 15 6 -3.4784 -5.6253 0.2674 16 1 -4.2049 -4.8262 0.2738 17 6 -3.9008 -6.9566 0.3704 18 7 -3.0383 -7.9285 0.2312 19 14 -5.6972 -7.3431 0.7067 20 1 -6.3991 -7.5908 -0.5782 21 1 -5.7913 -8.5526 1.5634 22 1 -6.3290 -6.1934 1.4024 23 7 0.1607 -2.5613 0.1073 24 1 -0.3634 -0.1274 1.0198 25 1 -0.3633 -0.8194 -0.6202 26 1 -0.3633 0.9469 -0.3995 27 1 1.6583 2.1288 -0.0004 28 1 4.1186 2.1326 0.0100 29 1 5.3622 0.0092 0.0005 30 1 4.1511 -2.1306 -0.0106 31 1 3.1666 -3.8496 -0.2644 32 1 -2.3368 -3.3310 0.2966 33 1 -3.3308 -8.8505 0.3029 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185709141.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:28 Heat of formation + Delta-G solvation = 12.906481 kcal Electronic energy + Delta-G solvation = -19289.914949 eV Core-core repulsion = 16213.435478 eV Total energy + Delta-G solvation = -3076.479471 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.14655 -40.19871 -39.01513 -35.60460 -34.62034 -33.59134 -32.48052 -29.95097 -28.91274 -27.50945 -25.97409 -23.63859 -22.56141 -21.94768 -21.11032 -19.25499 -18.68959 -17.58206 -17.51365 -17.13386 -16.22405 -16.07967 -15.91630 -15.54377 -14.94649 -14.90376 -14.54067 -14.08644 -13.89230 -13.78247 -13.34513 -13.07723 -12.93712 -12.85537 -12.78264 -12.55357 -12.05525 -11.87759 -11.71030 -11.67642 -11.00649 -10.40388 -10.30401 -10.06218 -9.72924 -9.57775 -8.52206 -8.48817 -7.15031 -0.26577 0.41170 0.47303 0.53641 1.30880 1.38815 1.41948 1.58793 1.96318 2.13103 2.35442 2.44801 3.02160 3.47053 3.62143 3.98121 4.08135 4.20314 4.37996 4.45143 4.52334 4.73903 4.85741 4.92168 5.01159 5.07668 5.14006 5.21560 5.50598 5.57890 5.62358 5.68571 5.77594 5.87293 5.90471 6.15568 6.60887 6.75084 7.17417 8.09610 8.39356 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.037231 B = 0.003769 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.890349 B = 7428.171909 C = 8152.852015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.077 4.077 3 C -0.131 4.131 4 C -0.112 4.112 5 C -0.129 4.129 6 C -0.110 4.110 7 C -0.045 4.045 8 C 0.108 3.892 9 C -0.370 4.370 10 S 0.220 5.780 11 C 0.268 3.732 12 N -0.631 5.631 13 C 0.517 3.483 14 O -0.587 6.587 15 C -0.545 4.545 16 H 0.097 0.903 17 C 0.036 3.964 18 N -0.783 5.783 19 Si 1.003 2.997 20 H -0.260 1.260 21 H -0.270 1.270 22 H -0.248 1.248 23 N -0.520 5.520 24 H 0.058 0.942 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.143 0.857 28 H 0.153 0.847 29 H 0.152 0.848 30 H 0.133 0.867 31 H 0.191 0.809 32 H 0.416 0.584 33 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.819 13.337 0.067 15.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.078 4.078 3 C -0.149 4.149 4 C -0.131 4.131 5 C -0.146 4.146 6 C -0.129 4.129 7 C -0.047 4.047 8 C -0.027 4.027 9 C -0.512 4.512 10 S 0.473 5.527 11 C -0.100 4.100 12 N -0.280 5.280 13 C 0.328 3.672 14 O -0.475 6.475 15 C -0.579 4.579 16 H 0.115 0.885 17 C -0.185 4.185 18 N -0.411 5.411 19 Si 0.822 3.178 20 H -0.185 1.185 21 H -0.194 1.194 22 H -0.171 1.171 23 N -0.245 5.245 24 H 0.076 0.924 25 H 0.092 0.908 26 H 0.087 0.913 27 H 0.161 0.839 28 H 0.171 0.829 29 H 0.170 0.830 30 H 0.151 0.849 31 H 0.208 0.792 32 H 0.254 0.746 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.949 11.744 -0.031 14.182 hybrid contribution -0.569 0.607 0.173 0.850 sum 7.381 12.352 0.142 14.390 Atomic orbital electron populations 1.20903 0.90756 1.02259 1.02330 1.20310 0.96942 0.92506 0.98013 1.21282 0.95080 0.97182 1.01327 1.21627 0.93856 0.99272 0.98316 1.21357 1.01219 0.91518 1.00531 1.21400 0.91989 0.99861 0.99648 1.18349 0.93219 0.89490 1.03682 1.19110 0.87282 0.93653 1.02623 1.27463 1.07174 0.97949 1.18610 1.85170 0.93803 1.06775 1.66984 1.24791 0.92853 0.92099 1.00230 1.43102 1.01946 1.11115 1.71837 1.17321 0.91413 0.79033 0.79398 1.90606 1.55632 1.44132 1.57136 1.20207 0.91397 0.95007 1.51293 0.88460 1.26988 1.05139 0.94975 0.91354 1.70126 1.38381 1.01256 1.31307 0.84899 0.74537 0.79061 0.79325 1.18458 1.19439 1.17079 1.67071 1.11697 1.19533 1.26198 0.92352 0.90787 0.91264 0.83946 0.82905 0.82986 0.84900 0.79193 0.74583 0.90436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.15 8.70 71.23 0.62 -2.53 16 2 C -0.08 -2.26 5.92 -19.59 -0.12 -2.37 16 3 C -0.13 -2.96 9.66 22.24 0.21 -2.74 16 4 C -0.11 -2.12 10.04 22.36 0.22 -1.89 16 5 C -0.13 -2.56 10.03 22.23 0.22 -2.33 16 6 C -0.11 -2.82 9.49 22.54 0.21 -2.61 16 7 C -0.04 -1.45 5.88 -20.01 -0.12 -1.56 16 8 C 0.11 4.08 6.56 41.50 0.27 4.35 16 9 C -0.37 -13.37 10.42 67.60 0.70 -12.67 16 10 S 0.22 9.50 20.22 -56.49 -1.14 8.36 16 11 C 0.27 12.03 8.32 179.53 1.49 13.52 16 12 N -0.63 -29.03 5.33 -319.46 -1.70 -30.73 16 13 C 0.52 27.81 7.47 84.78 0.63 28.44 16 14 O -0.59 -35.11 12.32 -5.19 -0.06 -35.17 16 15 C -0.54 -27.98 9.23 23.25 0.21 -27.76 16 16 H 0.10 4.42 7.86 -2.91 -0.02 4.40 16 17 C 0.04 1.82 5.49 85.30 0.47 2.28 16 18 N -0.78 -43.02 11.73 21.84 0.26 -42.76 16 19 Si 1.00 36.63 29.56 68.60 2.03 38.66 16 20 H -0.26 -9.09 7.11 99.48 0.71 -8.38 16 21 H -0.27 -9.55 7.11 99.48 0.71 -8.84 16 22 H -0.25 -8.46 7.11 99.48 0.71 -7.76 16 23 N -0.52 -21.35 6.91 -186.48 -1.29 -22.64 16 24 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 25 H 0.07 2.59 5.74 -2.39 -0.01 2.57 16 26 H 0.07 1.66 8.04 -2.39 -0.02 1.64 16 27 H 0.14 2.48 8.05 -2.91 -0.02 2.46 16 28 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 29 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 30 H 0.13 3.00 6.67 -2.91 -0.02 2.98 16 31 H 0.19 5.52 6.91 -2.91 -0.02 5.50 16 32 H 0.42 16.67 8.77 -92.70 -0.81 15.86 16 33 H 0.29 14.02 8.29 -92.71 -0.77 13.25 16 Total: -1.00 -66.39 299.18 3.49 -62.90 By element: Atomic # 1 Polarization: 28.90 SS G_CDS: 0.35 Total: 29.25 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: 5.05 Total: -7.87 kcal Atomic # 7 Polarization: -93.40 SS G_CDS: -2.73 Total: -96.13 kcal Atomic # 8 Polarization: -35.11 SS G_CDS: -0.06 Total: -35.17 kcal Atomic # 14 Polarization: 36.63 SS G_CDS: 2.03 Total: 38.66 kcal Atomic # 16 Polarization: 9.50 SS G_CDS: -1.14 Total: 8.36 kcal Total: -66.39 3.49 -62.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185709141.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.808 kcal (2) G-P(sol) polarization free energy of solvation -66.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds