Wall clock time and date at job start Tue Mar 31 2020 06:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52996 * 109.47230 * 2 1 4 4 O 1.42898 * 109.47072 * 119.99839 * 2 1 3 5 5 C 1.35688 * 116.99959 * 89.99813 * 4 2 1 6 6 N 1.29417 * 125.39473 * 359.97438 * 5 4 2 7 7 N 1.37762 * 115.66946 * 179.78027 * 6 5 4 8 8 C 1.29694 * 115.58070 * 0.46077 * 7 6 5 9 9 S 1.76198 * 125.42918 * 179.83596 * 8 7 6 10 10 C 1.81399 * 103.00025 * 359.69316 * 9 8 7 11 11 H 1.08996 * 109.46676 * 55.00534 * 10 9 8 12 12 C 1.52997 * 109.47147 * 294.99897 * 10 9 8 13 13 C 1.52999 * 109.46810 * 174.99833 * 10 9 8 14 14 C 1.50700 * 109.47526 * 294.99909 * 13 10 9 15 15 H 1.07999 * 119.99543 * 0.02562 * 14 13 10 16 16 C 1.37876 * 120.00082 * 179.97438 * 14 13 10 17 17 N 1.31517 * 119.99897 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99903 * 180.02562 * 16 14 13 19 19 H 1.48491 * 109.47005 * 60.00168 * 18 16 14 20 20 H 1.48506 * 109.46816 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47146 * 299.99801 * 18 16 14 22 22 S 1.76041 * 125.39668 * 180.02562 * 5 4 2 23 23 H 1.09001 * 109.46881 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.46712 * 300.00112 * 1 2 3 25 25 H 1.08997 * 109.46975 * 59.99826 * 1 2 3 26 26 H 1.08994 * 109.46712 * 239.99888 * 2 1 3 27 27 H 1.08997 * 109.47249 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.46890 * 299.99739 * 3 2 1 29 29 H 1.09000 * 109.47323 * 59.99576 * 3 2 1 30 30 H 1.09002 * 109.47153 * 179.97438 * 12 10 9 31 31 H 1.09001 * 109.46832 * 60.00079 * 12 10 9 32 32 H 1.09004 * 109.47261 * 300.00060 * 12 10 9 33 33 H 1.09001 * 109.47317 * 55.00598 * 13 10 9 34 34 H 1.09006 * 109.47194 * 175.00234 * 13 10 9 35 35 H 0.97003 * 119.99498 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2117 -2.0110 1.0653 6 7 2.0113 -2.7216 0.0024 7 7 2.2905 -4.0654 0.1216 8 6 2.7099 -4.4490 1.2873 9 16 3.1366 -6.1011 1.7265 10 6 2.8295 -7.0229 0.1946 11 1 3.3920 -6.5692 -0.6213 12 6 1.3354 -6.9847 -0.1328 13 6 3.2750 -8.4753 0.3754 14 6 4.7679 -8.5217 0.5760 15 1 5.3415 -7.6066 0.5751 16 6 5.4013 -9.7322 0.7617 17 7 4.7027 -10.8464 0.7633 18 14 7.2517 -9.7895 1.0111 19 1 7.6127 -9.0065 2.2201 20 1 7.6841 -11.1993 1.1864 21 1 7.9294 -9.2084 -0.1757 22 16 2.7916 -3.0547 2.3589 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3632 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8899 27 1 3.1301 1.4425 0.0005 28 1 1.6768 1.9562 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.1509 -7.5381 -1.0535 31 1 1.0181 -5.9498 -0.2615 32 1 0.7729 -7.4384 0.6833 33 1 2.7779 -8.9022 1.2465 34 1 3.0098 -9.0499 -0.5122 35 1 5.1484 -11.6981 0.8936 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188300345.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:01 Heat of formation + Delta-G solvation = 9.553043 kcal Electronic energy + Delta-G solvation = -17850.602519 eV Core-core repulsion = 14909.421583 eV Total energy + Delta-G solvation = -2941.180936 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 288.071 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.12457 -38.38708 -34.66942 -33.58649 -32.16776 -30.91829 -27.64310 -27.50898 -25.29921 -23.37990 -23.07980 -20.91318 -20.44804 -19.43012 -17.81783 -16.45899 -16.31464 -16.10056 -15.19660 -14.88654 -14.58338 -14.40566 -13.84736 -13.34453 -12.99660 -12.88397 -12.75048 -12.61295 -12.38821 -11.86303 -11.71361 -11.50921 -11.33815 -11.31161 -10.91096 -10.74595 -10.68193 -10.50553 -10.11191 -9.97177 -9.57644 -9.55506 -9.24348 -9.19861 -8.44887 -7.32428 -6.10088 -4.13336 0.27550 0.78159 1.16617 1.65229 2.27188 2.77125 3.04701 3.31383 3.35415 3.38725 4.24416 4.40102 4.48364 4.56780 4.84434 5.15465 5.18738 5.27445 5.34437 5.40617 5.47500 5.62863 5.72522 5.75012 5.84145 6.03846 6.43310 6.52789 6.64302 6.68218 7.42624 7.47030 7.86241 7.91230 8.21004 8.91182 9.51732 11.00708 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.031728 B = 0.003543 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.292356 B = 7900.166137 C = 8250.830833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.079 3.921 3 C -0.149 4.149 4 O -0.273 6.273 5 C 0.226 3.774 6 N -0.344 5.344 7 N -0.270 5.270 8 C 0.023 3.977 9 S 0.049 5.951 10 C -0.060 4.060 11 H 0.093 0.907 12 C -0.148 4.148 13 C 0.038 3.962 14 C -0.528 4.528 15 H 0.063 0.937 16 C 0.062 3.938 17 N -0.892 5.892 18 Si 0.893 3.107 19 H -0.274 1.274 20 H -0.287 1.287 21 H -0.276 1.276 22 S 0.120 5.880 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.075 0.925 26 H 0.090 0.910 27 H 0.066 0.934 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.029 0.971 34 H 0.043 0.957 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.103 19.867 1.433 21.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.020 3.980 3 C -0.207 4.207 4 O -0.177 6.177 5 C -0.104 4.104 6 N -0.186 5.186 7 N -0.103 5.103 8 C -0.373 4.373 9 S 0.279 5.721 10 C -0.190 4.190 11 H 0.111 0.889 12 C -0.207 4.207 13 C -0.001 4.001 14 C -0.566 4.566 15 H 0.082 0.918 16 C -0.140 4.140 17 N -0.531 5.531 18 Si 0.720 3.280 19 H -0.199 1.199 20 H -0.213 1.213 21 H -0.201 1.201 22 S 0.355 5.645 23 H 0.083 0.917 24 H 0.084 0.916 25 H 0.094 0.906 26 H 0.108 0.892 27 H 0.085 0.915 28 H 0.100 0.900 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.047 0.953 34 H 0.061 0.939 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.799 19.479 2.257 20.754 hybrid contribution 0.539 0.408 -1.228 1.401 sum -6.260 19.887 1.029 20.874 Atomic orbital electron populations 1.22252 0.94285 1.03367 1.02976 1.22631 0.94942 0.93181 0.87197 1.21913 1.02277 0.93151 1.03310 1.86367 1.80525 1.12069 1.38741 1.27402 0.98359 0.90599 0.94038 1.75181 1.22937 0.98660 1.21864 1.75565 1.16983 1.01669 1.16098 1.31398 1.03445 1.06919 0.95561 1.86280 1.77514 0.86940 1.21359 1.23873 0.99067 1.01749 0.94354 0.88913 1.22102 0.94392 1.02144 1.02061 1.19109 0.96898 0.85315 0.98745 1.21215 0.92183 0.93142 1.50100 0.91842 1.24980 0.98438 0.95603 0.94972 1.69941 1.35875 0.97856 1.49413 0.86629 0.85349 0.76998 0.78981 1.19930 1.21274 1.20128 1.85636 1.69250 0.96449 1.13189 0.91698 0.91634 0.90591 0.89210 0.91511 0.90004 0.91351 0.91628 0.92209 0.92239 0.95277 0.93885 0.92712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 9.53 37.16 0.35 -1.15 16 2 C 0.08 0.79 3.22 -26.73 -0.09 0.71 16 3 C -0.15 -1.05 9.56 37.16 0.36 -0.70 16 4 O -0.27 -3.45 9.85 -18.77 -0.18 -3.63 16 5 C 0.23 3.34 8.40 51.75 0.43 3.78 16 6 N -0.34 -5.80 10.94 30.17 0.33 -5.47 16 7 N -0.27 -4.96 9.97 31.12 0.31 -4.65 16 8 C 0.02 0.40 7.58 51.86 0.39 0.79 16 9 S 0.05 0.91 20.90 -107.50 -2.25 -1.33 16 10 C -0.06 -1.21 2.46 -26.73 -0.07 -1.28 16 11 H 0.09 1.94 8.14 -51.93 -0.42 1.52 16 12 C -0.15 -2.60 9.06 37.16 0.34 -2.26 16 13 C 0.04 0.92 4.45 -27.88 -0.12 0.80 16 14 C -0.53 -14.06 8.53 -34.44 -0.29 -14.36 16 15 H 0.06 1.66 7.60 -52.49 -0.40 1.26 16 16 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 17 N -0.89 -25.67 13.29 55.43 0.74 -24.93 16 18 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 19 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 S 0.12 1.72 23.39 -107.50 -2.51 -0.80 16 23 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.09 1.01 7.26 -51.93 -0.38 0.63 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.06 1.04 6.24 -51.93 -0.32 0.72 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.04 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 326.44 15.07 4.92 4.92 Total: -1.00 -29.10 326.44 -7.35 -36.45 By element: Atomic # 1 Polarization: 0.31 SS G_CDS: -4.89 Total: -4.58 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: 1.21 Total: -12.05 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: 1.38 Total: -35.05 kcal Atomic # 8 Polarization: -3.45 SS G_CDS: -0.18 Total: -3.63 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 2.63 SS G_CDS: -4.76 Total: -2.13 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.10 -7.35 -36.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188300345.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.007 kcal (2) G-P(sol) polarization free energy of solvation -29.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds