Wall clock time and date at job start Tue Mar 31 2020 06:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52996 * 109.47230 * 2 1 4 4 O 1.42898 * 109.47072 * 119.99839 * 2 1 3 5 5 C 1.35688 * 116.99959 * 89.99813 * 4 2 1 6 6 N 1.29417 * 125.39473 * 359.97438 * 5 4 2 7 7 N 1.37762 * 115.66946 * 179.78027 * 6 5 4 8 8 C 1.29694 * 115.58070 * 0.46077 * 7 6 5 9 9 S 1.76198 * 125.42918 * 179.83596 * 8 7 6 10 10 C 1.81399 * 103.00025 * 359.69316 * 9 8 7 11 11 H 1.08996 * 109.46676 * 55.00534 * 10 9 8 12 12 C 1.52997 * 109.47147 * 294.99897 * 10 9 8 13 13 C 1.52999 * 109.46810 * 174.99833 * 10 9 8 14 14 C 1.50700 * 109.47526 * 294.99909 * 13 10 9 15 15 H 1.07999 * 119.99543 * 0.02562 * 14 13 10 16 16 C 1.37876 * 120.00082 * 179.97438 * 14 13 10 17 17 N 1.31517 * 119.99897 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99903 * 180.02562 * 16 14 13 19 19 H 1.48491 * 109.47005 * 60.00168 * 18 16 14 20 20 H 1.48506 * 109.46816 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47146 * 299.99801 * 18 16 14 22 22 S 1.76041 * 125.39668 * 180.02562 * 5 4 2 23 23 H 1.09001 * 109.46881 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.46712 * 300.00112 * 1 2 3 25 25 H 1.08997 * 109.46975 * 59.99826 * 1 2 3 26 26 H 1.08994 * 109.46712 * 239.99888 * 2 1 3 27 27 H 1.08997 * 109.47249 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.46890 * 299.99739 * 3 2 1 29 29 H 1.09000 * 109.47323 * 59.99576 * 3 2 1 30 30 H 1.09002 * 109.47153 * 179.97438 * 12 10 9 31 31 H 1.09001 * 109.46832 * 60.00079 * 12 10 9 32 32 H 1.09004 * 109.47261 * 300.00060 * 12 10 9 33 33 H 1.09001 * 109.47317 * 55.00598 * 13 10 9 34 34 H 1.09006 * 109.47194 * 175.00234 * 13 10 9 35 35 H 0.97003 * 119.99498 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2117 -2.0110 1.0653 6 7 2.0113 -2.7216 0.0024 7 7 2.2905 -4.0654 0.1216 8 6 2.7099 -4.4490 1.2873 9 16 3.1366 -6.1011 1.7265 10 6 2.8295 -7.0229 0.1946 11 1 3.3920 -6.5692 -0.6213 12 6 1.3354 -6.9847 -0.1328 13 6 3.2750 -8.4753 0.3754 14 6 4.7679 -8.5217 0.5760 15 1 5.3415 -7.6066 0.5751 16 6 5.4013 -9.7322 0.7617 17 7 4.7027 -10.8464 0.7633 18 14 7.2517 -9.7895 1.0111 19 1 7.6127 -9.0065 2.2201 20 1 7.6841 -11.1993 1.1864 21 1 7.9294 -9.2084 -0.1757 22 16 2.7916 -3.0547 2.3589 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3632 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8899 27 1 3.1301 1.4425 0.0005 28 1 1.6768 1.9562 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.1509 -7.5381 -1.0535 31 1 1.0181 -5.9498 -0.2615 32 1 0.7729 -7.4384 0.6833 33 1 2.7779 -8.9022 1.2465 34 1 3.0098 -9.0499 -0.5122 35 1 5.1484 -11.6981 0.8936 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188300345.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:01 Heat of formation + Delta-G solvation = -8.557423 kcal Electronic energy + Delta-G solvation = -17851.387847 eV Core-core repulsion = 14909.421583 eV Total energy + Delta-G solvation = -2941.966264 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 288.071 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.23858 -39.54929 -36.48120 -34.41834 -34.07163 -32.20232 -29.37639 -28.26037 -26.53009 -25.27545 -24.12450 -22.57442 -21.46842 -20.69224 -18.95071 -18.51094 -17.65056 -17.26413 -16.60624 -16.35268 -16.00475 -15.55501 -14.82528 -14.74824 -14.52125 -14.21099 -13.67157 -13.58819 -13.44181 -13.29611 -13.12074 -13.09299 -12.65096 -12.51409 -12.41885 -12.28754 -12.13060 -11.83068 -11.59886 -11.36231 -11.21225 -11.14732 -11.04852 -10.53114 -10.36948 -8.78215 -8.19273 -6.28620 -0.94536 -0.48023 -0.08989 0.26648 0.98640 1.22757 1.44036 1.45513 1.53154 1.98952 2.43121 3.11964 3.16332 3.73004 3.83962 3.93564 4.03967 4.10340 4.15769 4.49555 4.62808 4.71216 4.74812 4.80415 4.88005 4.96237 5.12464 5.18861 5.18953 5.39488 5.49077 5.66696 5.77653 6.16422 6.63592 6.83278 7.40083 8.91904 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.031728 B = 0.003543 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.292356 B = 7900.166137 C = 8250.830833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.069 3.931 3 C -0.143 4.143 4 O -0.271 6.271 5 C 0.230 3.770 6 N -0.364 5.364 7 N -0.288 5.288 8 C 0.006 3.994 9 S 0.040 5.960 10 C -0.055 4.055 11 H 0.081 0.919 12 C -0.138 4.138 13 C 0.046 3.954 14 C -0.538 4.538 15 H 0.065 0.935 16 C 0.010 3.990 17 N -0.928 5.928 18 Si 0.955 3.045 19 H -0.266 1.266 20 H -0.284 1.284 21 H -0.270 1.270 22 S 0.179 5.821 23 H 0.041 0.959 24 H 0.075 0.925 25 H 0.098 0.902 26 H 0.075 0.925 27 H 0.063 0.937 28 H 0.105 0.895 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.011 0.989 34 H 0.022 0.978 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.877 22.309 1.940 23.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.011 3.989 3 C -0.200 4.200 4 O -0.175 6.175 5 C -0.099 4.099 6 N -0.208 5.208 7 N -0.121 5.121 8 C -0.391 4.391 9 S 0.270 5.730 10 C -0.186 4.186 11 H 0.100 0.900 12 C -0.197 4.197 13 C 0.007 3.993 14 C -0.576 4.576 15 H 0.083 0.917 16 C -0.189 4.189 17 N -0.568 5.568 18 Si 0.780 3.220 19 H -0.190 1.190 20 H -0.210 1.210 21 H -0.195 1.195 22 S 0.414 5.586 23 H 0.060 0.940 24 H 0.094 0.906 25 H 0.116 0.884 26 H 0.094 0.906 27 H 0.082 0.918 28 H 0.123 0.877 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.029 0.971 34 H 0.040 0.960 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.577 21.956 2.764 23.086 hybrid contribution 0.404 -0.146 -1.378 1.443 sum -6.173 21.810 1.386 22.709 Atomic orbital electron populations 1.22245 0.93222 1.02361 1.04649 1.22988 0.95907 0.94337 0.85704 1.21943 1.02140 0.91043 1.04912 1.86414 1.80189 1.10746 1.40144 1.27621 0.96891 0.91499 0.93852 1.75184 1.24579 0.98126 1.22895 1.75542 1.16867 1.02843 1.16875 1.31182 1.04162 1.07070 0.96648 1.86105 1.78737 0.88193 1.19968 1.23566 1.00470 0.99506 0.95019 0.90031 1.22012 0.92563 1.02500 1.02611 1.18881 0.95771 0.87726 0.96901 1.21561 0.93490 0.93190 1.49391 0.91722 1.25801 1.02894 0.95333 0.94852 1.70057 1.37648 0.98371 1.50708 0.85646 0.80060 0.77109 0.79213 1.19033 1.20981 1.19522 1.85427 1.68082 0.94027 1.11025 0.93970 0.90562 0.88360 0.90633 0.91762 0.87687 0.90425 0.91014 0.91848 0.91546 0.97073 0.95960 0.92680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.59 9.53 71.99 0.69 -1.90 16 2 C 0.07 1.25 3.22 30.60 0.10 1.34 16 3 C -0.14 -1.62 9.56 71.98 0.69 -0.94 16 4 O -0.27 -6.32 9.85 -90.07 -0.89 -7.21 16 5 C 0.23 6.47 8.40 130.60 1.10 7.57 16 6 N -0.36 -11.98 10.94 -172.72 -1.89 -13.87 16 7 N -0.29 -10.43 9.97 -55.45 -0.55 -10.99 16 8 C 0.01 0.21 7.58 130.56 0.99 1.20 16 9 S 0.04 1.51 20.90 -56.49 -1.18 0.33 16 10 C -0.06 -2.26 2.46 30.59 0.08 -2.18 16 11 H 0.08 3.48 8.14 -2.39 -0.02 3.46 16 12 C -0.14 -4.85 9.06 71.98 0.65 -4.19 16 13 C 0.05 2.28 4.45 29.85 0.13 2.42 16 14 C -0.54 -29.03 8.53 25.60 0.22 -28.82 16 15 H 0.06 3.40 7.60 -2.91 -0.02 3.38 16 16 C 0.01 0.55 5.46 84.65 0.46 1.01 16 17 N -0.93 -54.27 13.29 21.45 0.28 -53.99 16 18 Si 0.95 43.24 29.54 68.60 2.03 45.27 16 19 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 20 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 21 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 22 S 0.18 4.79 23.39 -56.49 -1.32 3.47 16 23 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 24 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.08 1.61 7.26 -2.39 -0.02 1.59 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.06 2.19 6.24 -2.39 -0.01 2.17 16 32 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 33 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.02 1.18 8.14 -2.38 -0.02 1.16 16 35 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 Total: -1.00 -62.29 326.44 2.66 -59.62 By element: Atomic # 1 Polarization: 0.77 SS G_CDS: 1.08 Total: 1.85 kcal Atomic # 6 Polarization: -29.59 SS G_CDS: 5.10 Total: -24.49 kcal Atomic # 7 Polarization: -76.69 SS G_CDS: -2.16 Total: -78.85 kcal Atomic # 8 Polarization: -6.32 SS G_CDS: -0.89 Total: -7.21 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Atomic # 16 Polarization: 6.30 SS G_CDS: -2.50 Total: 3.80 kcal Total: -62.29 2.66 -59.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188300345.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.064 kcal (2) G-P(sol) polarization free energy of solvation -62.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds