Wall clock time and date at job start Tue Mar 31 2020 06:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09004 * 109.47282 * 2 1 4 4 C 1.50698 * 109.47222 * 120.00183 * 2 1 3 5 5 C 1.38264 * 119.96322 * 59.72502 * 4 2 1 6 6 C 1.38210 * 120.07144 * 180.27972 * 5 4 2 7 7 C 1.38410 * 120.00055 * 359.97438 * 6 5 4 8 8 F 1.35102 * 120.03943 * 180.02562 * 7 6 5 9 9 C 1.38650 * 119.92901 * 359.97438 * 7 6 5 10 10 F 1.35105 * 120.03821 * 180.02562 * 9 7 6 11 11 C 1.38215 * 119.96850 * 240.00026 * 4 2 1 12 12 S 1.81399 * 109.47298 * 240.00401 * 2 1 3 13 13 O 1.42104 * 109.46969 * 298.61295 * 12 2 1 14 14 C 1.81397 * 103.00339 * 54.99791 * 12 2 1 15 15 C 1.52996 * 109.47288 * 180.02562 * 14 12 2 16 16 C 1.50704 * 109.46864 * 180.02562 * 15 14 12 17 17 H 1.08002 * 120.00071 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00110 * 180.02562 * 16 15 14 19 19 N 1.31508 * 120.00193 * 179.97438 * 18 16 15 20 20 Si 1.86809 * 119.99755 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.47112 * 90.00031 * 20 18 16 22 22 H 1.48493 * 109.46950 * 209.99910 * 20 18 16 23 23 H 1.48501 * 109.47126 * 329.99987 * 20 18 16 24 24 H 1.09004 * 109.47195 * 60.00013 * 1 2 3 25 25 H 1.08996 * 109.47458 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47301 * 299.99780 * 1 2 3 27 27 H 1.07995 * 119.96100 * 0.27813 * 5 4 2 28 28 H 1.07998 * 120.00309 * 180.02562 * 6 5 4 29 29 H 1.08000 * 119.99321 * 359.74111 * 11 4 2 30 30 H 1.09002 * 109.47328 * 300.00520 * 14 12 2 31 31 H 1.09006 * 109.46933 * 60.00293 * 14 12 2 32 32 H 1.08994 * 109.47145 * 299.99871 * 15 14 12 33 33 H 1.08998 * 109.47136 * 60.00534 * 15 14 12 34 34 H 0.97001 * 119.99794 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 1.2304 5 6 1.6931 -2.0325 1.4513 6 6 2.1478 -2.6845 2.5819 7 6 2.9440 -2.0142 3.4943 8 9 3.3894 -2.6509 4.5995 9 6 3.2850 -0.6887 3.2722 10 9 4.0626 -0.0324 4.1611 11 6 2.8268 -0.0381 2.1398 12 16 2.1346 -0.8550 -1.4812 13 8 1.6876 -2.2038 -1.4651 14 6 1.3148 0.0375 -2.8309 15 6 1.7279 -0.5736 -4.1713 16 6 1.0473 0.1683 -5.2927 17 1 0.3866 0.9935 -5.0714 18 6 1.2681 -0.2063 -6.6011 19 7 0.6738 0.4409 -7.5796 20 14 2.4103 -1.6340 -6.9838 21 1 1.6304 -2.8974 -7.0144 22 1 3.0504 -1.4152 -8.3057 23 1 3.4581 -1.7244 -5.9353 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.0722 -2.5562 0.7396 28 1 1.8826 -3.7173 2.7531 29 1 3.0908 0.9946 1.9662 30 1 0.2339 -0.0403 -2.7142 31 1 1.6086 1.0869 -2.8037 32 1 2.8088 -0.4961 -4.2883 33 1 1.4338 -1.6228 -4.1983 34 1 0.8294 0.1775 -8.5001 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190801850.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:48 Heat of formation + Delta-G solvation = -113.410618 kcal Electronic energy + Delta-G solvation = -19908.292809 eV Core-core repulsion = 16375.646632 eV Total energy + Delta-G solvation = -3532.646178 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.074 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.66448 -48.74172 -39.47316 -35.42826 -34.20561 -33.76105 -31.35048 -31.14231 -29.30355 -25.64000 -24.38785 -23.51780 -21.71992 -20.81158 -18.18268 -17.69430 -17.30036 -17.16554 -16.63820 -16.50618 -15.38878 -15.20799 -15.15045 -14.66850 -14.56194 -14.24232 -14.15690 -13.88511 -13.39007 -13.13757 -12.71226 -12.62416 -12.48988 -12.19262 -11.84880 -11.69282 -11.59483 -11.19761 -11.07060 -10.66121 -10.23882 -10.02146 -9.63764 -9.39071 -9.24059 -8.75588 -8.63199 -7.86869 -6.13454 -4.13376 0.59300 0.74388 1.77425 2.87606 3.14305 3.26996 3.34516 3.36566 3.53178 3.89814 4.13611 4.26084 4.37639 4.39036 4.74597 4.84622 4.94525 5.10043 5.19782 5.36206 5.51786 5.55996 5.63608 5.73615 5.77018 5.86158 5.89436 5.97421 6.13908 6.49916 6.53349 6.99745 7.11607 7.63249 8.42010 8.89337 9.47455 10.99472 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.035257 B = 0.003435 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.981426 B = 8150.500670 C = 8370.087060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.383 4.383 3 H 0.132 0.868 4 C -0.036 4.036 5 C -0.096 4.096 6 C -0.120 4.120 7 C 0.060 3.940 8 F -0.132 7.132 9 C 0.067 3.933 10 F -0.130 7.130 11 C -0.118 4.118 12 S 1.222 4.778 13 O -0.840 6.840 14 C -0.407 4.407 15 C 0.004 3.996 16 C -0.519 4.519 17 H 0.074 0.926 18 C 0.069 3.931 19 N -0.900 5.900 20 Si 0.875 3.125 21 H -0.276 1.276 22 H -0.285 1.285 23 H -0.262 1.262 24 H 0.072 0.928 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.152 0.848 28 H 0.146 0.854 29 H 0.150 0.850 30 H 0.083 0.917 31 H 0.112 0.888 32 H 0.027 0.973 33 H 0.018 0.982 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.747 -0.611 20.814 21.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.497 4.497 3 H 0.150 0.850 4 C -0.037 4.037 5 C -0.114 4.114 6 C -0.139 4.139 7 C 0.039 3.961 8 F -0.110 7.110 9 C 0.046 3.954 10 F -0.109 7.109 11 C -0.138 4.138 12 S 1.422 4.578 13 O -0.835 6.835 14 C -0.547 4.547 15 C -0.035 4.035 16 C -0.559 4.559 17 H 0.092 0.908 18 C -0.133 4.133 19 N -0.539 5.539 20 Si 0.702 3.298 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.187 1.187 24 H 0.091 0.909 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.169 0.831 28 H 0.164 0.836 29 H 0.168 0.832 30 H 0.101 0.899 31 H 0.130 0.870 32 H 0.045 0.955 33 H 0.036 0.964 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.383 -1.380 20.686 21.692 hybrid contribution -1.528 -0.703 0.185 1.692 sum 4.855 -2.083 20.872 21.530 Atomic orbital electron populations 1.21856 0.91901 1.03017 1.03383 1.26721 1.02829 1.09813 1.10320 0.84978 1.19142 0.96358 0.93497 0.94747 1.21356 0.99321 0.94075 0.96683 1.21084 0.97823 1.01282 0.93705 1.17725 1.01383 0.90193 0.86784 1.91519 1.87707 1.81512 1.50280 1.17607 0.97182 0.89760 0.90811 1.91528 1.72209 1.80512 1.66612 1.21000 0.99155 1.01346 0.92314 1.70674 1.15836 0.85611 0.85661 1.93072 1.81154 1.25765 1.83506 1.27461 1.08714 1.09310 1.09166 1.19249 0.97226 0.96313 0.90732 1.21011 1.28290 1.17249 0.89315 0.90829 1.25014 0.95612 0.96428 0.96267 1.69895 1.43337 1.41007 0.99612 0.86843 0.81810 0.83099 0.78036 1.20150 1.21061 1.18678 0.90937 0.91988 0.91996 0.83065 0.83617 0.83188 0.89851 0.86966 0.95475 0.96357 0.92538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 8.75 37.15 0.33 -1.27 16 2 C -0.38 -3.88 3.07 -27.89 -0.09 -3.96 16 3 H 0.13 0.93 7.87 -51.92 -0.41 0.52 16 4 C -0.04 -0.38 4.78 -104.62 -0.50 -0.88 16 5 C -0.10 -1.09 8.44 -39.58 -0.33 -1.42 16 6 C -0.12 -1.26 10.02 -39.53 -0.40 -1.65 16 7 C 0.06 0.67 7.31 -39.37 -0.29 0.38 16 8 F -0.13 -1.57 17.18 2.25 0.04 -1.53 16 9 C 0.07 0.72 7.31 -39.37 -0.29 0.43 16 10 F -0.13 -1.49 17.18 2.25 0.04 -1.45 16 11 C -0.12 -1.10 9.65 -39.53 -0.38 -1.48 16 12 S 1.22 16.13 12.60 -107.50 -1.35 14.77 16 13 O -0.84 -15.30 16.17 -35.23 -0.57 -15.87 16 14 C -0.41 -6.87 5.26 37.16 0.20 -6.68 16 15 C 0.00 0.08 4.05 -27.88 -0.11 -0.03 16 16 C -0.52 -14.26 9.66 -34.44 -0.33 -14.59 16 17 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 18 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 19 N -0.90 -27.13 13.96 55.43 0.77 -26.35 16 20 Si 0.88 21.18 27.47 -169.99 -4.67 16.51 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 23 H -0.26 -5.94 6.54 56.52 0.37 -5.57 16 24 H 0.07 0.82 6.51 -51.93 -0.34 0.49 16 25 H 0.06 0.77 7.38 -51.93 -0.38 0.38 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.15 1.93 6.21 -52.49 -0.33 1.60 16 28 H 0.15 1.25 8.06 -52.49 -0.42 0.82 16 29 H 0.15 1.00 7.94 -52.49 -0.42 0.59 16 30 H 0.08 1.48 6.90 -51.92 -0.36 1.13 16 31 H 0.11 1.63 8.14 -51.92 -0.42 1.20 16 32 H 0.03 0.57 7.20 -51.93 -0.37 0.20 16 33 H 0.02 0.44 7.57 -51.93 -0.39 0.04 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 307.31 15.07 4.63 4.63 Total: -1.00 -33.58 307.31 -7.26 -40.83 By element: Atomic # 1 Polarization: 1.62 SS G_CDS: -3.85 Total: -2.23 kcal Atomic # 6 Polarization: -27.01 SS G_CDS: -2.30 Total: -29.30 kcal Atomic # 7 Polarization: -27.13 SS G_CDS: 0.77 Total: -26.35 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -0.57 Total: -15.87 kcal Atomic # 9 Polarization: -3.06 SS G_CDS: 0.08 Total: -2.98 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.67 Total: 16.51 kcal Atomic # 16 Polarization: 16.13 SS G_CDS: -1.35 Total: 14.77 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -33.58 -7.26 -40.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190801850.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.576 kcal (2) G-P(sol) polarization free energy of solvation -33.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds