Wall clock time and date at job start Tue Mar 31 2020 06:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09004 * 109.47282 * 2 1 4 4 C 1.50698 * 109.47222 * 120.00183 * 2 1 3 5 5 C 1.38264 * 119.96322 * 59.72502 * 4 2 1 6 6 C 1.38210 * 120.07144 * 180.27972 * 5 4 2 7 7 C 1.38410 * 120.00055 * 359.97438 * 6 5 4 8 8 F 1.35102 * 120.03943 * 180.02562 * 7 6 5 9 9 C 1.38650 * 119.92901 * 359.97438 * 7 6 5 10 10 F 1.35105 * 120.03821 * 180.02562 * 9 7 6 11 11 C 1.38215 * 119.96850 * 240.00026 * 4 2 1 12 12 S 1.81399 * 109.47298 * 240.00401 * 2 1 3 13 13 O 1.42104 * 109.46969 * 298.61295 * 12 2 1 14 14 C 1.81397 * 103.00339 * 54.99791 * 12 2 1 15 15 C 1.52996 * 109.47288 * 180.02562 * 14 12 2 16 16 C 1.50704 * 109.46864 * 180.02562 * 15 14 12 17 17 H 1.08002 * 120.00071 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00110 * 180.02562 * 16 15 14 19 19 N 1.31508 * 120.00193 * 179.97438 * 18 16 15 20 20 Si 1.86809 * 119.99755 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.47112 * 90.00031 * 20 18 16 22 22 H 1.48493 * 109.46950 * 209.99910 * 20 18 16 23 23 H 1.48501 * 109.47126 * 329.99987 * 20 18 16 24 24 H 1.09004 * 109.47195 * 60.00013 * 1 2 3 25 25 H 1.08996 * 109.47458 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47301 * 299.99780 * 1 2 3 27 27 H 1.07995 * 119.96100 * 0.27813 * 5 4 2 28 28 H 1.07998 * 120.00309 * 180.02562 * 6 5 4 29 29 H 1.08000 * 119.99321 * 359.74111 * 11 4 2 30 30 H 1.09002 * 109.47328 * 300.00520 * 14 12 2 31 31 H 1.09006 * 109.46933 * 60.00293 * 14 12 2 32 32 H 1.08994 * 109.47145 * 299.99871 * 15 14 12 33 33 H 1.08998 * 109.47136 * 60.00534 * 15 14 12 34 34 H 0.97001 * 119.99794 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 1.2304 5 6 1.6931 -2.0325 1.4513 6 6 2.1478 -2.6845 2.5819 7 6 2.9440 -2.0142 3.4943 8 9 3.3894 -2.6509 4.5995 9 6 3.2850 -0.6887 3.2722 10 9 4.0626 -0.0324 4.1611 11 6 2.8268 -0.0381 2.1398 12 16 2.1346 -0.8550 -1.4812 13 8 1.6876 -2.2038 -1.4651 14 6 1.3148 0.0375 -2.8309 15 6 1.7279 -0.5736 -4.1713 16 6 1.0473 0.1683 -5.2927 17 1 0.3866 0.9935 -5.0714 18 6 1.2681 -0.2063 -6.6011 19 7 0.6738 0.4409 -7.5796 20 14 2.4103 -1.6340 -6.9838 21 1 1.6304 -2.8974 -7.0144 22 1 3.0504 -1.4152 -8.3057 23 1 3.4581 -1.7244 -5.9353 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.0722 -2.5562 0.7396 28 1 1.8826 -3.7173 2.7531 29 1 3.0908 0.9946 1.9662 30 1 0.2339 -0.0403 -2.7142 31 1 1.6086 1.0869 -2.8037 32 1 2.8088 -0.4961 -4.2883 33 1 1.4338 -1.6228 -4.1983 34 1 0.8294 0.1775 -8.5001 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190801850.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:48 Heat of formation + Delta-G solvation = -134.849733 kcal Electronic energy + Delta-G solvation = -19909.222479 eV Core-core repulsion = 16375.646632 eV Total energy + Delta-G solvation = -3533.575848 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.074 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.52394 -49.60521 -40.29660 -36.71649 -35.69101 -35.05455 -33.23547 -31.94555 -30.19883 -27.45822 -25.26078 -24.32453 -23.00405 -22.18479 -19.20260 -19.01095 -18.61263 -18.10772 -17.76951 -17.36948 -16.55059 -16.31512 -16.03191 -15.97005 -15.77785 -15.49649 -15.29941 -14.93690 -14.73339 -14.34273 -14.01830 -13.69326 -13.51124 -13.43695 -13.25550 -12.88739 -12.69831 -12.53015 -12.34417 -12.03358 -11.87030 -11.73061 -11.49987 -10.80648 -10.77961 -10.09852 -9.74171 -9.00624 -8.30424 -6.34793 -0.27672 -0.04533 0.71789 1.36547 1.38067 1.48962 1.77294 2.32021 2.35313 2.71741 2.86892 3.05218 3.27088 3.40530 3.57338 3.92439 4.03577 4.14318 4.29172 4.29594 4.44425 4.53727 4.72411 4.76191 4.83150 4.89139 4.94772 5.01739 5.11419 5.31570 5.37391 5.40860 5.60872 5.68543 6.26607 6.72971 7.29853 8.85845 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.035257 B = 0.003435 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.981426 B = 8150.500670 C = 8370.087060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.369 4.369 3 H 0.180 0.820 4 C -0.042 4.042 5 C -0.107 4.107 6 C -0.120 4.120 7 C 0.050 3.950 8 F -0.139 7.139 9 C 0.059 3.941 10 F -0.134 7.134 11 C -0.099 4.099 12 S 1.280 4.720 13 O -0.892 6.892 14 C -0.417 4.417 15 C -0.002 4.002 16 C -0.527 4.527 17 H 0.038 0.962 18 C 0.006 3.994 19 N -0.950 5.950 20 Si 0.936 3.064 21 H -0.280 1.280 22 H -0.278 1.278 23 H -0.232 1.232 24 H 0.067 0.933 25 H 0.041 0.959 26 H 0.080 0.920 27 H 0.134 0.866 28 H 0.159 0.841 29 H 0.186 0.814 30 H 0.065 0.935 31 H 0.137 0.863 32 H 0.049 0.951 33 H 0.001 0.999 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.560 -0.123 22.621 23.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.485 4.485 3 H 0.197 0.803 4 C -0.043 4.043 5 C -0.126 4.126 6 C -0.139 4.139 7 C 0.029 3.971 8 F -0.118 7.118 9 C 0.039 3.961 10 F -0.113 7.113 11 C -0.118 4.118 12 S 1.482 4.518 13 O -0.888 6.888 14 C -0.555 4.555 15 C -0.040 4.040 16 C -0.566 4.566 17 H 0.057 0.943 18 C -0.191 4.191 19 N -0.590 5.590 20 Si 0.759 3.241 21 H -0.205 1.205 22 H -0.203 1.203 23 H -0.155 1.155 24 H 0.086 0.914 25 H 0.060 0.940 26 H 0.099 0.901 27 H 0.152 0.848 28 H 0.176 0.824 29 H 0.204 0.796 30 H 0.084 0.916 31 H 0.156 0.844 32 H 0.068 0.932 33 H 0.019 0.981 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.202 -0.896 22.465 23.932 hybrid contribution -2.177 -0.792 -0.205 2.326 sum 6.024 -1.688 22.260 23.122 Atomic orbital electron populations 1.21888 0.92575 1.02031 1.04151 1.26617 1.02312 1.11694 1.07905 0.80306 1.19140 0.96914 0.93113 0.95145 1.21336 0.99632 0.94890 0.96766 1.21167 0.97499 1.01952 0.93260 1.17911 1.01750 0.90675 0.86745 1.91500 1.87839 1.81750 1.50673 1.17780 0.97388 0.89636 0.91324 1.91523 1.72362 1.80508 1.66864 1.21249 0.97255 1.02602 0.90742 1.70051 1.13610 0.83295 0.84864 1.92986 1.81781 1.29318 1.84671 1.27505 1.08103 1.11345 1.08509 1.19196 0.97936 0.94839 0.92048 1.21437 1.27559 1.16439 0.91174 0.94332 1.25973 0.97541 0.99377 0.96250 1.70046 1.45568 1.43249 1.00155 0.85865 0.80382 0.78955 0.78882 1.20545 1.20334 1.15508 0.91368 0.93984 0.90072 0.84787 0.82383 0.79634 0.91581 0.84440 0.93240 0.98069 0.92447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 8.75 71.98 0.63 -2.34 16 2 C -0.37 -6.11 3.07 29.84 0.09 -6.02 16 3 H 0.18 1.41 7.87 -2.39 -0.02 1.39 16 4 C -0.04 -0.73 4.78 -19.86 -0.09 -0.82 16 5 C -0.11 -2.28 8.44 22.27 0.19 -2.09 16 6 C -0.12 -2.34 10.02 22.30 0.22 -2.12 16 7 C 0.05 1.02 7.31 22.41 0.16 1.19 16 8 F -0.14 -3.15 17.18 44.97 0.77 -2.37 16 9 C 0.06 1.10 7.31 22.41 0.16 1.27 16 10 F -0.13 -2.71 17.18 44.97 0.77 -1.94 16 11 C -0.10 -1.42 9.65 22.30 0.22 -1.21 16 12 S 1.28 30.82 12.60 -56.49 -0.71 30.11 16 13 O -0.89 -31.77 16.17 -148.98 -2.41 -34.18 16 14 C -0.42 -13.54 5.26 71.98 0.38 -13.16 16 15 C 0.00 -0.07 4.05 29.85 0.12 0.05 16 16 C -0.53 -29.42 9.66 25.60 0.25 -29.18 16 17 H 0.04 2.34 7.99 -2.91 -0.02 2.32 16 18 C 0.01 0.33 5.47 84.66 0.46 0.80 16 19 N -0.95 -58.78 13.96 21.45 0.30 -58.48 16 20 Si 0.94 43.34 27.47 68.60 1.88 45.23 16 21 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 22 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 23 H -0.23 -9.55 6.54 99.48 0.65 -8.90 16 24 H 0.07 1.43 6.51 -2.38 -0.02 1.42 16 25 H 0.04 1.00 7.38 -2.39 -0.02 0.99 16 26 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.13 3.38 6.21 -2.91 -0.02 3.36 16 28 H 0.16 2.55 8.06 -2.91 -0.02 2.53 16 29 H 0.19 1.34 7.94 -2.91 -0.02 1.31 16 30 H 0.07 2.34 6.90 -2.39 -0.02 2.33 16 31 H 0.14 3.66 8.14 -2.39 -0.02 3.64 16 32 H 0.05 1.96 7.20 -2.39 -0.02 1.94 16 33 H 0.00 0.05 7.57 -2.39 -0.02 0.03 16 34 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -75.52 307.31 4.46 -71.06 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: 1.06 Total: 4.22 kcal Atomic # 6 Polarization: -56.43 SS G_CDS: 2.79 Total: -53.64 kcal Atomic # 7 Polarization: -58.78 SS G_CDS: 0.30 Total: -58.48 kcal Atomic # 8 Polarization: -31.77 SS G_CDS: -2.41 Total: -34.18 kcal Atomic # 9 Polarization: -5.85 SS G_CDS: 1.55 Total: -4.31 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 1.88 Total: 45.23 kcal Atomic # 16 Polarization: 30.82 SS G_CDS: -0.71 Total: 30.11 kcal Total: -75.52 4.46 -71.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190801850.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.794 kcal (2) G-P(sol) polarization free energy of solvation -75.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds