Wall clock time and date at job start Tue Mar 31 2020 06:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47214 * 2 1 4 4 C 1.50704 * 109.46656 * 240.00481 * 2 1 3 5 5 C 1.38260 * 119.96364 * 120.00133 * 4 2 1 6 6 C 1.38215 * 120.06473 * 179.97438 * 5 4 2 7 7 C 1.38398 * 120.00693 * 0.02562 * 6 5 4 8 8 F 1.35100 * 120.03900 * 180.02562 * 7 6 5 9 9 C 1.38649 * 119.93079 * 359.97438 * 7 6 5 10 10 F 1.35096 * 120.04121 * 179.97438 * 9 7 6 11 11 C 1.38216 * 119.96471 * 299.72529 * 4 2 1 12 12 S 1.81395 * 109.47168 * 120.00709 * 2 1 3 13 13 O 1.42105 * 109.46783 * 188.61010 * 12 2 1 14 14 C 1.81400 * 103.00021 * 304.99482 * 12 2 1 15 15 C 1.52991 * 109.47338 * 180.02562 * 14 12 2 16 16 C 1.50708 * 109.47328 * 180.02562 * 15 14 12 17 17 H 1.08006 * 119.99590 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00075 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00217 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99958 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46969 * 60.00177 * 20 18 16 22 22 H 1.48498 * 109.47178 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47363 * 300.00292 * 20 18 16 24 24 H 1.09007 * 109.47300 * 299.99886 * 1 2 3 25 25 H 1.09001 * 109.47450 * 59.99386 * 1 2 3 26 26 H 1.08999 * 109.47777 * 179.97438 * 1 2 3 27 27 H 1.07994 * 119.96659 * 359.97438 * 5 4 2 28 28 H 1.08007 * 119.99146 * 179.97438 * 6 5 4 29 29 H 1.07996 * 119.99664 * 359.97438 * 11 4 2 30 30 H 1.09000 * 109.47191 * 300.00533 * 14 12 2 31 31 H 1.09007 * 109.47076 * 59.99824 * 14 12 2 32 32 H 1.09004 * 109.46932 * 299.99793 * 15 14 12 33 33 H 1.08997 * 109.47513 * 60.00272 * 15 14 12 34 34 H 0.97004 * 119.99800 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2306 5 6 2.8270 -0.0377 -2.1402 6 6 3.2892 -0.6873 -3.2692 7 6 2.9561 -2.0122 -3.4906 8 9 3.4080 -2.6479 -4.5937 9 6 2.1591 -2.6868 -2.5784 10 9 1.8322 -3.9800 -2.7925 11 6 1.7025 -2.0352 -1.4458 12 16 2.1346 -0.8553 1.4810 13 8 3.5415 -0.6841 1.5856 14 6 1.3150 0.0372 2.8309 15 6 1.7289 -0.5733 4.1712 16 6 1.0475 0.1678 5.2927 17 1 0.3856 0.9921 5.0714 18 6 1.2689 -0.2065 6.6010 19 7 2.0752 -1.2100 6.8705 20 14 0.4248 0.7125 7.9911 21 1 -1.0479 0.6065 7.8319 22 1 0.8265 0.1199 9.2920 23 1 0.8250 2.1420 7.9542 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 3.0870 0.9963 -1.9683 28 1 3.9097 -0.1605 -3.9792 29 1 1.0856 -2.5609 -0.7321 30 1 1.6087 1.0865 2.8037 31 1 0.2340 -0.0406 2.7141 32 1 1.4354 -1.6227 4.1986 33 1 2.8098 -0.4951 4.2878 34 1 2.2307 -1.4735 7.7910 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190801866.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:50 Heat of formation + Delta-G solvation = -117.705565 kcal Electronic energy + Delta-G solvation = -19837.511090 eV Core-core repulsion = 16304.678669 eV Total energy + Delta-G solvation = -3532.832421 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.074 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.62231 -48.69841 -39.43959 -35.29810 -34.18656 -33.72206 -31.10437 -30.95420 -29.28062 -25.33603 -24.49068 -23.31556 -21.90625 -21.04880 -18.16993 -17.49614 -17.29910 -16.93120 -16.51672 -16.38900 -15.34104 -15.11099 -14.96595 -14.64655 -14.50783 -14.35168 -14.15821 -13.86386 -13.65220 -12.84813 -12.71005 -12.57919 -12.27064 -11.93461 -11.75056 -11.46746 -11.39858 -11.27491 -10.97909 -10.78043 -10.18296 -10.12870 -9.59693 -9.34422 -9.17975 -8.67113 -8.45204 -7.79406 -6.08177 -4.12963 0.63339 0.75175 1.84578 2.99663 3.16356 3.27962 3.33247 3.34917 3.55993 4.07312 4.15016 4.30128 4.32556 4.39868 4.72822 4.85976 5.01266 5.15361 5.26817 5.41176 5.56116 5.59205 5.69549 5.71756 5.77955 5.83993 6.01052 6.07695 6.16720 6.50862 6.73827 7.43648 7.54874 7.86188 8.26743 8.91411 9.51479 11.02373 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.037465 B = 0.003259 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.184564 B = 8588.616267 C = 8727.032673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.389 4.389 3 H 0.099 0.901 4 C -0.024 4.024 5 C -0.096 4.096 6 C -0.120 4.120 7 C 0.057 3.943 8 F -0.131 7.131 9 C 0.077 3.923 10 F -0.127 7.127 11 C -0.130 4.130 12 S 1.221 4.779 13 O -0.842 6.842 14 C -0.414 4.414 15 C 0.038 3.962 16 C -0.521 4.521 17 H 0.057 0.943 18 C 0.058 3.942 19 N -0.892 5.892 20 Si 0.896 3.104 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.277 1.277 24 H 0.073 0.927 25 H 0.060 0.940 26 H 0.073 0.927 27 H 0.137 0.863 28 H 0.145 0.855 29 H 0.158 0.842 30 H 0.074 0.926 31 H 0.109 0.891 32 H 0.029 0.971 33 H 0.023 0.977 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.927 -1.026 -20.070 20.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.502 4.502 3 H 0.118 0.882 4 C -0.026 4.026 5 C -0.115 4.115 6 C -0.139 4.139 7 C 0.036 3.964 8 F -0.110 7.110 9 C 0.057 3.943 10 F -0.105 7.105 11 C -0.149 4.149 12 S 1.422 4.578 13 O -0.837 6.837 14 C -0.554 4.554 15 C -0.001 4.001 16 C -0.560 4.560 17 H 0.075 0.925 18 C -0.144 4.144 19 N -0.531 5.531 20 Si 0.723 3.277 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.203 1.203 24 H 0.092 0.908 25 H 0.079 0.921 26 H 0.091 0.909 27 H 0.155 0.845 28 H 0.163 0.837 29 H 0.175 0.825 30 H 0.093 0.907 31 H 0.128 0.872 32 H 0.047 0.953 33 H 0.041 0.959 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.188 -1.956 -19.957 20.305 hybrid contribution 0.251 2.451 0.595 2.535 sum -2.937 0.495 -19.362 19.590 Atomic orbital electron populations 1.21535 0.89991 1.03452 1.03177 1.26701 1.03979 1.08752 1.10790 0.88235 1.19113 0.95965 0.92705 0.94792 1.21042 0.96862 1.00750 0.92860 1.21044 1.01322 0.92182 0.99344 1.17672 1.00728 0.92163 0.85825 1.91520 1.87390 1.81846 1.50237 1.17569 1.00571 0.79852 0.96342 1.91539 1.90923 1.33344 1.94709 1.21030 1.02266 0.94793 0.96848 1.70539 0.90294 1.11125 0.85849 1.93110 1.25237 1.81893 1.83444 1.27646 1.08519 1.08599 1.10608 1.18800 0.97408 0.96318 0.87541 1.21094 1.27820 1.16443 0.90686 0.92475 1.25041 0.95242 0.95180 0.98943 1.69948 1.36080 1.27236 1.19795 0.86598 0.79890 0.79972 0.81200 1.20050 1.21148 1.20297 0.90830 0.92060 0.90851 0.84481 0.83677 0.82486 0.90706 0.87240 0.95283 0.95899 0.92661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.07 8.76 37.16 0.33 -0.74 16 2 C -0.39 -4.39 3.07 -27.88 -0.09 -4.48 16 3 H 0.10 1.16 7.87 -51.92 -0.41 0.75 16 4 C -0.02 -0.27 4.78 -104.62 -0.50 -0.77 16 5 C -0.10 -0.99 9.67 -39.58 -0.38 -1.38 16 6 C -0.12 -1.17 10.02 -39.53 -0.40 -1.57 16 7 C 0.06 0.64 7.31 -39.37 -0.29 0.35 16 8 F -0.13 -1.57 17.18 2.25 0.04 -1.53 16 9 C 0.08 0.87 7.31 -39.36 -0.29 0.59 16 10 F -0.13 -1.51 17.18 2.25 0.04 -1.47 16 11 C -0.13 -1.33 8.75 -39.52 -0.35 -1.68 16 12 S 1.22 18.58 12.27 -107.50 -1.32 17.26 16 13 O -0.84 -18.31 18.14 -35.23 -0.64 -18.95 16 14 C -0.41 -7.59 5.26 37.15 0.20 -7.40 16 15 C 0.04 0.94 4.98 -27.88 -0.14 0.80 16 16 C -0.52 -14.28 9.11 -34.44 -0.31 -14.60 16 17 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.89 -26.35 13.29 55.43 0.74 -25.61 16 20 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H 0.07 0.64 6.51 -51.93 -0.34 0.30 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.48 7.40 -51.93 -0.38 0.10 16 27 H 0.14 1.21 7.94 -52.49 -0.42 0.80 16 28 H 0.15 1.06 8.06 -52.48 -0.42 0.64 16 29 H 0.16 1.18 7.59 -52.49 -0.40 0.79 16 30 H 0.07 1.43 8.14 -51.92 -0.42 1.01 16 31 H 0.11 1.67 6.90 -51.92 -0.36 1.31 16 32 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 314.28 15.07 4.74 4.74 Total: -1.00 -34.99 314.28 -7.70 -42.69 By element: Atomic # 1 Polarization: 0.07 SS G_CDS: -3.96 Total: -3.89 kcal Atomic # 6 Polarization: -27.02 SS G_CDS: -2.31 Total: -29.33 kcal Atomic # 7 Polarization: -26.35 SS G_CDS: 0.74 Total: -25.61 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -0.64 Total: -18.95 kcal Atomic # 9 Polarization: -3.09 SS G_CDS: 0.08 Total: -3.01 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 18.58 SS G_CDS: -1.32 Total: 17.26 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -34.99 -7.70 -42.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190801866.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.014 kcal (2) G-P(sol) polarization free energy of solvation -34.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds