Wall clock time and date at job start Tue Mar 31 2020 06:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47214 * 2 1 4 4 C 1.50704 * 109.46656 * 240.00481 * 2 1 3 5 5 C 1.38260 * 119.96364 * 120.00133 * 4 2 1 6 6 C 1.38215 * 120.06473 * 179.97438 * 5 4 2 7 7 C 1.38398 * 120.00693 * 0.02562 * 6 5 4 8 8 F 1.35100 * 120.03900 * 180.02562 * 7 6 5 9 9 C 1.38649 * 119.93079 * 359.97438 * 7 6 5 10 10 F 1.35096 * 120.04121 * 179.97438 * 9 7 6 11 11 C 1.38216 * 119.96471 * 299.72529 * 4 2 1 12 12 S 1.81395 * 109.47168 * 120.00709 * 2 1 3 13 13 O 1.42105 * 109.46783 * 188.61010 * 12 2 1 14 14 C 1.81400 * 103.00021 * 304.99482 * 12 2 1 15 15 C 1.52991 * 109.47338 * 180.02562 * 14 12 2 16 16 C 1.50708 * 109.47328 * 180.02562 * 15 14 12 17 17 H 1.08006 * 119.99590 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00075 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00217 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99958 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46969 * 60.00177 * 20 18 16 22 22 H 1.48498 * 109.47178 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47363 * 300.00292 * 20 18 16 24 24 H 1.09007 * 109.47300 * 299.99886 * 1 2 3 25 25 H 1.09001 * 109.47450 * 59.99386 * 1 2 3 26 26 H 1.08999 * 109.47777 * 179.97438 * 1 2 3 27 27 H 1.07994 * 119.96659 * 359.97438 * 5 4 2 28 28 H 1.08007 * 119.99146 * 179.97438 * 6 5 4 29 29 H 1.07996 * 119.99664 * 359.97438 * 11 4 2 30 30 H 1.09000 * 109.47191 * 300.00533 * 14 12 2 31 31 H 1.09007 * 109.47076 * 59.99824 * 14 12 2 32 32 H 1.09004 * 109.46932 * 299.99793 * 15 14 12 33 33 H 1.08997 * 109.47513 * 60.00272 * 15 14 12 34 34 H 0.97004 * 119.99800 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2306 5 6 2.8270 -0.0377 -2.1402 6 6 3.2892 -0.6873 -3.2692 7 6 2.9561 -2.0122 -3.4906 8 9 3.4080 -2.6479 -4.5937 9 6 2.1591 -2.6868 -2.5784 10 9 1.8322 -3.9800 -2.7925 11 6 1.7025 -2.0352 -1.4458 12 16 2.1346 -0.8553 1.4810 13 8 3.5415 -0.6841 1.5856 14 6 1.3150 0.0372 2.8309 15 6 1.7289 -0.5733 4.1712 16 6 1.0475 0.1678 5.2927 17 1 0.3856 0.9921 5.0714 18 6 1.2689 -0.2065 6.6010 19 7 2.0752 -1.2100 6.8705 20 14 0.4248 0.7125 7.9911 21 1 -1.0479 0.6065 7.8319 22 1 0.8265 0.1199 9.2920 23 1 0.8250 2.1420 7.9542 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 3.0870 0.9963 -1.9683 28 1 3.9097 -0.1605 -3.9792 29 1 1.0856 -2.5609 -0.7321 30 1 1.6087 1.0865 2.8037 31 1 0.2340 -0.0406 2.7141 32 1 1.4354 -1.6227 4.1986 33 1 2.8098 -0.4951 4.2878 34 1 2.2307 -1.4735 7.7910 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190801866.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:49 Heat of formation + Delta-G solvation = -140.213116 kcal Electronic energy + Delta-G solvation = -19838.487090 eV Core-core repulsion = 16304.678669 eV Total energy + Delta-G solvation = -3533.808421 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.074 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.50877 -49.59052 -40.26680 -36.81360 -35.74017 -35.02552 -32.90153 -31.85241 -30.13652 -27.27842 -25.30755 -24.13706 -23.39550 -22.32009 -19.05891 -18.76579 -18.42785 -18.23616 -17.79716 -17.35606 -16.66607 -16.34118 -16.01991 -16.00415 -15.68800 -15.52883 -15.17029 -14.96853 -14.66792 -14.31863 -13.98725 -13.66200 -13.41362 -13.37936 -12.92120 -12.78456 -12.60677 -12.56176 -12.27964 -12.22735 -11.90884 -11.81552 -11.49936 -10.79507 -10.57743 -10.08443 -9.70415 -9.10341 -8.20073 -6.33388 -0.26518 -0.04284 0.63911 1.41568 1.44414 1.52490 1.75208 2.31962 2.41383 2.72846 2.88949 3.12465 3.25974 3.39681 3.53602 3.92566 4.07552 4.16424 4.29863 4.36838 4.47727 4.64655 4.78235 4.84865 4.93553 4.96097 4.99840 5.10979 5.28796 5.41312 5.47426 5.53072 5.68792 5.78261 6.18164 6.81795 7.36305 8.90752 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.037465 B = 0.003259 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.184564 B = 8588.616267 C = 8727.032673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.365 4.365 3 H 0.100 0.900 4 C -0.040 4.040 5 C -0.099 4.099 6 C -0.115 4.115 7 C 0.045 3.955 8 F -0.138 7.138 9 C 0.062 3.938 10 F -0.133 7.133 11 C -0.128 4.128 12 S 1.261 4.739 13 O -0.914 6.914 14 C -0.413 4.413 15 C 0.034 3.966 16 C -0.541 4.541 17 H 0.068 0.932 18 C -0.002 4.002 19 N -0.934 5.934 20 Si 0.967 3.033 21 H -0.257 1.257 22 H -0.285 1.285 23 H -0.273 1.273 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.097 0.903 27 H 0.153 0.847 28 H 0.170 0.830 29 H 0.183 0.817 30 H 0.064 0.936 31 H 0.147 0.853 32 H 0.024 0.976 33 H -0.027 1.027 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.962 0.037 -21.141 21.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.482 4.482 3 H 0.119 0.881 4 C -0.042 4.042 5 C -0.118 4.118 6 C -0.134 4.134 7 C 0.024 3.976 8 F -0.117 7.117 9 C 0.042 3.958 10 F -0.112 7.112 11 C -0.147 4.147 12 S 1.465 4.535 13 O -0.910 6.910 14 C -0.552 4.552 15 C -0.004 4.004 16 C -0.580 4.580 17 H 0.086 0.914 18 C -0.200 4.200 19 N -0.574 5.574 20 Si 0.791 3.209 21 H -0.181 1.181 22 H -0.211 1.211 23 H -0.198 1.198 24 H 0.094 0.906 25 H 0.097 0.903 26 H 0.116 0.884 27 H 0.170 0.830 28 H 0.188 0.812 29 H 0.200 0.800 30 H 0.083 0.917 31 H 0.164 0.836 32 H 0.042 0.958 33 H -0.008 1.008 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.226 -0.896 -20.987 21.647 hybrid contribution 0.884 2.131 0.738 2.423 sum -4.342 1.235 -20.250 20.747 Atomic orbital electron populations 1.21698 0.87252 1.05551 1.04209 1.26393 1.06005 1.08110 1.07706 0.88107 1.19185 0.96937 0.93192 0.94908 1.21314 0.96160 1.01606 0.92762 1.21288 1.00973 0.91568 0.99551 1.17956 1.01006 0.92860 0.85748 1.91501 1.87516 1.82079 1.50605 1.17751 1.01246 0.79788 0.96986 1.91521 1.91059 1.33805 1.94807 1.21302 1.01974 0.94606 0.96816 1.69653 0.87548 1.10547 0.85729 1.92999 1.29236 1.83632 1.85116 1.27543 1.11199 1.07636 1.08775 1.18664 0.94176 0.96548 0.91009 1.21629 1.27824 1.16749 0.91786 0.91397 1.26038 0.95922 0.96042 1.02030 1.70097 1.37792 1.29085 1.20395 0.85469 0.79541 0.78407 0.77452 1.18114 1.21069 1.19815 0.90553 0.90289 0.88387 0.82974 0.81246 0.79970 0.91724 0.83551 0.95762 1.00837 0.92636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.72 8.76 71.98 0.63 -1.08 16 2 C -0.36 -7.29 3.07 29.85 0.09 -7.20 16 3 H 0.10 2.08 7.87 -2.39 -0.02 2.06 16 4 C -0.04 -0.79 4.78 -19.86 -0.09 -0.89 16 5 C -0.10 -1.81 9.67 22.27 0.22 -1.60 16 6 C -0.12 -2.01 10.02 22.30 0.22 -1.78 16 7 C 0.04 0.95 7.31 22.41 0.16 1.11 16 8 F -0.14 -3.18 17.18 44.97 0.77 -2.41 16 9 C 0.06 1.33 7.31 22.41 0.16 1.49 16 10 F -0.13 -3.06 17.18 44.97 0.77 -2.28 16 11 C -0.13 -2.34 8.75 22.31 0.20 -2.14 16 12 S 1.26 37.62 12.27 -56.49 -0.69 36.93 16 13 O -0.91 -40.83 18.14 -148.98 -2.70 -43.54 16 14 C -0.41 -14.93 5.26 71.98 0.38 -14.55 16 15 C 0.03 1.75 4.98 29.85 0.15 1.90 16 16 C -0.54 -29.86 9.11 25.60 0.23 -29.62 16 17 H 0.07 3.50 7.74 -2.91 -0.02 3.47 16 18 C 0.00 -0.13 5.46 84.65 0.46 0.34 16 19 N -0.93 -56.54 13.29 21.45 0.28 -56.26 16 20 Si 0.97 43.18 29.54 68.60 2.03 45.20 16 21 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 22 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 23 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 24 H 0.08 1.02 6.51 -2.38 -0.02 1.00 16 25 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.10 0.85 7.40 -2.39 -0.02 0.83 16 27 H 0.15 2.28 7.94 -2.91 -0.02 2.26 16 28 H 0.17 2.03 8.06 -2.91 -0.02 2.00 16 29 H 0.18 2.22 7.59 -2.91 -0.02 2.19 16 30 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 31 H 0.15 4.10 6.90 -2.39 -0.02 4.08 16 32 H 0.02 1.23 8.14 -2.39 -0.02 1.21 16 33 H -0.03 -1.62 8.14 -2.39 -0.02 -1.64 16 34 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -78.69 314.28 4.39 -74.30 By element: Atomic # 1 Polarization: 0.97 SS G_CDS: 1.11 Total: 2.08 kcal Atomic # 6 Polarization: -56.84 SS G_CDS: 2.81 Total: -54.03 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: 0.28 Total: -56.26 kcal Atomic # 8 Polarization: -40.83 SS G_CDS: -2.70 Total: -43.54 kcal Atomic # 9 Polarization: -6.24 SS G_CDS: 1.55 Total: -4.69 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Atomic # 16 Polarization: 37.62 SS G_CDS: -0.69 Total: 36.93 kcal Total: -78.69 4.39 -74.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190801866.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.913 kcal (2) G-P(sol) polarization free energy of solvation -78.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds