Wall clock time and date at job start Tue Mar 31 2020 06:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47302 * 2 1 4 4 C 1.50707 * 109.46853 * 240.00326 * 2 1 3 5 5 C 1.38258 * 119.96021 * 120.00276 * 4 2 1 6 6 C 1.38215 * 120.06841 * 180.02562 * 5 4 2 7 7 C 1.38414 * 119.99875 * 359.97438 * 6 5 4 8 8 F 1.35105 * 120.03718 * 180.02562 * 7 6 5 9 9 C 1.38645 * 119.92836 * 359.97438 * 7 6 5 10 10 F 1.35105 * 120.03621 * 179.97438 * 9 7 6 11 11 C 1.38210 * 119.96546 * 299.72137 * 4 2 1 12 12 S 1.81394 * 109.47482 * 120.00348 * 2 1 3 13 13 O 1.42101 * 109.47193 * 61.38608 * 12 2 1 14 14 C 1.81399 * 102.99894 * 304.99961 * 12 2 1 15 15 C 1.53005 * 109.47445 * 179.97438 * 14 12 2 16 16 C 1.50696 * 109.47353 * 179.97438 * 15 14 12 17 17 H 1.08000 * 120.00290 * 0.02562 * 16 15 14 18 18 C 1.37870 * 119.99993 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00258 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00043 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47216 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47057 * 120.00171 * 20 18 16 23 23 H 1.48500 * 109.47389 * 240.00151 * 20 18 16 24 24 H 1.08997 * 109.47111 * 299.99627 * 1 2 3 25 25 H 1.09000 * 109.47328 * 59.99744 * 1 2 3 26 26 H 1.09002 * 109.46991 * 179.97438 * 1 2 3 27 27 H 1.07996 * 119.97184 * 359.96789 * 5 4 2 28 28 H 1.07994 * 120.00338 * 179.97438 * 6 5 4 29 29 H 1.08004 * 119.99768 * 359.97438 * 11 4 2 30 30 H 1.09001 * 109.47190 * 299.99732 * 14 12 2 31 31 H 1.09004 * 109.47089 * 59.99865 * 14 12 2 32 32 H 1.09001 * 109.46962 * 300.00183 * 15 14 12 33 33 H 1.09004 * 109.46832 * 60.00020 * 15 14 12 34 34 H 0.96999 * 120.00397 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2306 5 6 2.8271 -0.0377 -2.1401 6 6 3.2885 -0.6868 -3.2697 7 6 2.9554 -2.0119 -3.4910 8 9 3.4065 -2.6474 -4.5947 9 6 2.1592 -2.6868 -2.5784 10 9 1.8323 -3.9801 -2.7925 11 6 1.7026 -2.0352 -1.4457 12 16 2.1347 -0.8552 1.4810 13 8 1.6877 -2.2039 1.4649 14 6 1.3149 0.0373 2.8308 15 6 1.7280 -0.5739 4.1713 16 6 1.0474 0.1679 5.2927 17 1 0.3861 0.9926 5.0715 18 6 1.2691 -0.2062 6.6010 19 7 2.0748 -1.2101 6.8705 20 14 0.4250 0.7129 7.9910 21 1 -0.4244 1.7924 7.4267 22 1 -0.4225 -0.2296 8.7648 23 1 1.4502 1.3062 8.8866 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 3.0869 0.9964 -1.9683 28 1 3.9090 -0.1602 -3.9796 29 1 1.0857 -2.5610 -0.7319 30 1 1.6087 1.0866 2.8037 31 1 0.2340 -0.0406 2.7141 32 1 1.4339 -1.6232 4.1982 33 1 2.8090 -0.4964 4.2882 34 1 2.2311 -1.4730 7.7910 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190801901.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:53 Heat of formation + Delta-G solvation = -117.245060 kcal Electronic energy + Delta-G solvation = -19928.036146 eV Core-core repulsion = 16395.223694 eV Total energy + Delta-G solvation = -3532.812452 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.074 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.56970 -48.64226 -39.40673 -35.30000 -34.15145 -33.72162 -31.06609 -30.91065 -29.29228 -25.32849 -24.43718 -23.26440 -21.81608 -21.03479 -18.11125 -17.54260 -17.18699 -16.97718 -16.50164 -16.38676 -15.28657 -15.06154 -14.88787 -14.55408 -14.48199 -14.36884 -14.13349 -13.69938 -13.62695 -12.84795 -12.67470 -12.47952 -12.23939 -12.06368 -11.74721 -11.54625 -11.39078 -11.14164 -11.00495 -10.74314 -10.18398 -10.06116 -9.56899 -9.31820 -9.14722 -8.66373 -8.45674 -7.74609 -6.08408 -4.12876 0.65571 0.81532 1.90223 3.02467 3.20222 3.25867 3.33786 3.36879 3.61757 4.05227 4.18211 4.33773 4.38861 4.44005 4.78450 4.96676 4.98786 5.18728 5.26872 5.40904 5.60004 5.67054 5.73493 5.77141 5.83079 5.86332 6.02126 6.07512 6.20613 6.56887 6.75315 7.44645 7.55774 7.86556 8.27220 8.92146 9.51730 11.02178 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.039507 B = 0.003289 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.560378 B = 8510.125571 C = 8766.569210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.387 4.387 3 H 0.132 0.868 4 C -0.035 4.035 5 C -0.094 4.094 6 C -0.125 4.125 7 C 0.057 3.943 8 F -0.132 7.132 9 C 0.073 3.927 10 F -0.129 7.129 11 C -0.123 4.123 12 S 1.226 4.774 13 O -0.838 6.838 14 C -0.414 4.414 15 C 0.038 3.962 16 C -0.519 4.519 17 H 0.058 0.942 18 C 0.057 3.943 19 N -0.892 5.892 20 Si 0.895 3.105 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.282 1.282 24 H 0.071 0.929 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.145 0.855 28 H 0.146 0.854 29 H 0.157 0.843 30 H 0.106 0.894 31 H 0.077 0.923 32 H 0.023 0.977 33 H 0.028 0.972 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.704 5.234 -19.568 20.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.500 4.500 3 H 0.150 0.850 4 C -0.036 4.036 5 C -0.113 4.113 6 C -0.144 4.144 7 C 0.037 3.963 8 F -0.111 7.111 9 C 0.053 3.947 10 F -0.107 7.107 11 C -0.143 4.143 12 S 1.426 4.574 13 O -0.834 6.834 14 C -0.554 4.554 15 C -0.001 4.001 16 C -0.559 4.559 17 H 0.076 0.924 18 C -0.145 4.145 19 N -0.531 5.531 20 Si 0.722 3.278 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.208 1.208 24 H 0.089 0.911 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.163 0.837 28 H 0.164 0.836 29 H 0.175 0.825 30 H 0.124 0.876 31 H 0.096 0.904 32 H 0.042 0.958 33 H 0.046 0.954 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.384 4.271 -19.472 20.411 hybrid contribution -2.686 -0.002 0.448 2.723 sum 1.698 4.268 -19.024 19.571 Atomic orbital electron populations 1.21846 0.92156 1.02926 1.03174 1.26778 1.02670 1.09805 1.10782 0.84967 1.19152 0.96680 0.92453 0.95309 1.21032 0.96986 1.00640 0.92628 1.21042 1.01813 0.92007 0.99547 1.17717 1.00631 0.92306 0.85648 1.91516 1.87390 1.81949 1.50221 1.17649 1.00773 0.79932 0.96365 1.91534 1.90960 1.33537 1.94686 1.21347 1.01499 0.95208 0.96232 1.70650 1.15719 0.85652 0.85409 1.93086 1.81057 1.25831 1.83397 1.27630 1.08200 1.09034 1.10511 1.18802 0.97324 0.96376 0.87580 1.21170 1.27720 1.16305 0.90661 0.92409 1.25044 0.95287 0.95149 0.98981 1.69965 1.36353 1.27179 1.19568 0.86495 0.79415 0.79742 0.82111 1.19741 1.20980 1.20813 0.91055 0.92122 0.92131 0.83728 0.83576 0.82526 0.87561 0.90444 0.95847 0.95378 0.92796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 8.76 37.15 0.33 -1.38 16 2 C -0.39 -4.17 3.07 -27.88 -0.09 -4.26 16 3 H 0.13 0.95 7.87 -51.92 -0.41 0.55 16 4 C -0.03 -0.38 4.78 -104.62 -0.50 -0.88 16 5 C -0.09 -0.78 9.67 -39.58 -0.38 -1.16 16 6 C -0.13 -1.10 10.02 -39.52 -0.40 -1.49 16 7 C 0.06 0.67 7.31 -39.37 -0.29 0.38 16 8 F -0.13 -1.63 17.18 2.25 0.04 -1.59 16 9 C 0.07 0.98 7.31 -39.37 -0.29 0.70 16 10 F -0.13 -1.92 17.18 2.25 0.04 -1.88 16 11 C -0.12 -1.67 8.42 -39.53 -0.33 -2.00 16 12 S 1.23 17.78 12.60 -107.50 -1.35 16.43 16 13 O -0.84 -17.00 16.13 -35.23 -0.57 -17.56 16 14 C -0.41 -7.43 5.26 37.16 0.20 -7.23 16 15 C 0.04 0.93 4.98 -27.88 -0.14 0.79 16 16 C -0.52 -14.17 9.11 -34.44 -0.31 -14.48 16 17 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 20 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 21 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H 0.07 0.85 6.51 -51.93 -0.34 0.51 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.83 7.40 -51.93 -0.38 0.44 16 27 H 0.14 0.73 7.94 -52.49 -0.42 0.31 16 28 H 0.15 0.86 8.06 -52.49 -0.42 0.44 16 29 H 0.16 2.44 6.20 -52.48 -0.33 2.11 16 30 H 0.11 1.60 8.14 -51.92 -0.42 1.18 16 31 H 0.08 1.44 6.90 -51.92 -0.36 1.08 16 32 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 310.89 15.07 4.69 4.69 Total: -1.00 -34.21 310.89 -7.63 -41.84 By element: Atomic # 1 Polarization: 0.95 SS G_CDS: -3.89 Total: -2.94 kcal Atomic # 6 Polarization: -27.21 SS G_CDS: -2.30 Total: -29.51 kcal Atomic # 7 Polarization: -26.29 SS G_CDS: 0.74 Total: -25.55 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -0.57 Total: -17.56 kcal Atomic # 9 Polarization: -3.55 SS G_CDS: 0.08 Total: -3.47 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 17.78 SS G_CDS: -1.35 Total: 16.43 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -34.21 -7.63 -41.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190801901.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.403 kcal (2) G-P(sol) polarization free energy of solvation -34.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds