Wall clock time and date at job start Tue Mar 31 2020 06:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47302 * 2 1 4 4 C 1.50707 * 109.46853 * 240.00326 * 2 1 3 5 5 C 1.38258 * 119.96021 * 120.00276 * 4 2 1 6 6 C 1.38215 * 120.06841 * 180.02562 * 5 4 2 7 7 C 1.38414 * 119.99875 * 359.97438 * 6 5 4 8 8 F 1.35105 * 120.03718 * 180.02562 * 7 6 5 9 9 C 1.38645 * 119.92836 * 359.97438 * 7 6 5 10 10 F 1.35105 * 120.03621 * 179.97438 * 9 7 6 11 11 C 1.38210 * 119.96546 * 299.72137 * 4 2 1 12 12 S 1.81394 * 109.47482 * 120.00348 * 2 1 3 13 13 O 1.42101 * 109.47193 * 61.38608 * 12 2 1 14 14 C 1.81399 * 102.99894 * 304.99961 * 12 2 1 15 15 C 1.53005 * 109.47445 * 179.97438 * 14 12 2 16 16 C 1.50696 * 109.47353 * 179.97438 * 15 14 12 17 17 H 1.08000 * 120.00290 * 0.02562 * 16 15 14 18 18 C 1.37870 * 119.99993 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00258 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00043 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47216 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47057 * 120.00171 * 20 18 16 23 23 H 1.48500 * 109.47389 * 240.00151 * 20 18 16 24 24 H 1.08997 * 109.47111 * 299.99627 * 1 2 3 25 25 H 1.09000 * 109.47328 * 59.99744 * 1 2 3 26 26 H 1.09002 * 109.46991 * 179.97438 * 1 2 3 27 27 H 1.07996 * 119.97184 * 359.96789 * 5 4 2 28 28 H 1.07994 * 120.00338 * 179.97438 * 6 5 4 29 29 H 1.08004 * 119.99768 * 359.97438 * 11 4 2 30 30 H 1.09001 * 109.47190 * 299.99732 * 14 12 2 31 31 H 1.09004 * 109.47089 * 59.99865 * 14 12 2 32 32 H 1.09001 * 109.46962 * 300.00183 * 15 14 12 33 33 H 1.09004 * 109.46832 * 60.00020 * 15 14 12 34 34 H 0.96999 * 120.00397 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2306 5 6 2.8271 -0.0377 -2.1401 6 6 3.2885 -0.6868 -3.2697 7 6 2.9554 -2.0119 -3.4910 8 9 3.4065 -2.6474 -4.5947 9 6 2.1592 -2.6868 -2.5784 10 9 1.8323 -3.9801 -2.7925 11 6 1.7026 -2.0352 -1.4457 12 16 2.1347 -0.8552 1.4810 13 8 1.6877 -2.2039 1.4649 14 6 1.3149 0.0373 2.8308 15 6 1.7280 -0.5739 4.1713 16 6 1.0474 0.1679 5.2927 17 1 0.3861 0.9926 5.0715 18 6 1.2691 -0.2062 6.6010 19 7 2.0748 -1.2101 6.8705 20 14 0.4250 0.7129 7.9910 21 1 -0.4244 1.7924 7.4267 22 1 -0.4225 -0.2296 8.7648 23 1 1.4502 1.3062 8.8866 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 3.0869 0.9964 -1.9683 28 1 3.9090 -0.1602 -3.9796 29 1 1.0857 -2.5610 -0.7319 30 1 1.6087 1.0866 2.8037 31 1 0.2340 -0.0406 2.7141 32 1 1.4339 -1.6232 4.1982 33 1 2.8090 -0.4964 4.2882 34 1 2.2311 -1.4730 7.7910 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190801901.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:52 Heat of formation + Delta-G solvation = -139.672983 kcal Electronic energy + Delta-G solvation = -19929.008694 eV Core-core repulsion = 16395.223694 eV Total energy + Delta-G solvation = -3533.784999 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.074 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.55802 -49.64145 -40.26190 -36.73078 -35.71945 -35.05802 -32.87712 -31.82334 -30.23407 -27.26098 -25.36725 -24.11613 -23.34625 -22.28160 -19.07008 -18.74410 -18.54198 -18.13710 -17.86002 -17.40968 -16.65047 -16.26388 -16.07815 -15.93239 -15.70522 -15.54783 -15.19205 -14.87681 -14.65702 -14.34183 -13.87269 -13.61151 -13.50289 -13.37947 -13.11506 -12.86407 -12.70289 -12.56361 -12.31184 -12.19988 -11.92775 -11.74970 -11.44203 -10.72831 -10.58703 -10.10016 -9.72151 -8.99636 -8.20158 -6.33080 -0.24349 -0.03355 0.74829 1.40592 1.41685 1.54240 1.83078 2.36824 2.41104 2.74360 2.90518 3.12555 3.26504 3.42827 3.60642 3.97644 4.07252 4.12556 4.33681 4.35051 4.53252 4.58246 4.75772 4.82248 4.87145 4.93585 5.03154 5.07081 5.13716 5.35574 5.46715 5.54755 5.73448 5.79767 6.19392 6.83074 7.36667 8.90931 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.039507 B = 0.003289 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.560378 B = 8510.125571 C = 8766.569210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.366 4.366 3 H 0.192 0.808 4 C -0.044 4.044 5 C -0.065 4.065 6 C -0.108 4.108 7 C 0.050 3.950 8 F -0.139 7.139 9 C 0.039 3.961 10 F -0.150 7.150 11 C -0.144 4.144 12 S 1.267 4.733 13 O -0.907 6.907 14 C -0.414 4.414 15 C 0.034 3.966 16 C -0.537 4.537 17 H 0.067 0.933 18 C -0.004 4.004 19 N -0.934 5.934 20 Si 0.967 3.033 21 H -0.258 1.258 22 H -0.286 1.286 23 H -0.273 1.273 24 H 0.071 0.929 25 H 0.086 0.914 26 H 0.027 0.973 27 H 0.200 0.800 28 H 0.187 0.813 29 H 0.122 0.878 30 H 0.145 0.855 31 H 0.065 0.935 32 H -0.028 1.028 33 H 0.022 0.978 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.494 9.532 -21.191 23.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.482 4.482 3 H 0.210 0.790 4 C -0.046 4.046 5 C -0.084 4.084 6 C -0.126 4.126 7 C 0.030 3.970 8 F -0.118 7.118 9 C 0.019 3.981 10 F -0.129 7.129 11 C -0.164 4.164 12 S 1.470 4.530 13 O -0.903 6.903 14 C -0.552 4.552 15 C -0.004 4.004 16 C -0.576 4.576 17 H 0.085 0.915 18 C -0.202 4.202 19 N -0.575 5.575 20 Si 0.791 3.209 21 H -0.182 1.182 22 H -0.213 1.213 23 H -0.198 1.198 24 H 0.090 0.910 25 H 0.104 0.896 26 H 0.047 0.953 27 H 0.217 0.783 28 H 0.205 0.795 29 H 0.140 0.860 30 H 0.163 0.837 31 H 0.084 0.916 32 H -0.009 1.009 33 H 0.041 0.959 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.172 8.563 -21.050 23.306 hybrid contribution -2.921 -1.320 0.772 3.297 sum 2.252 7.243 -20.278 21.650 Atomic orbital electron populations 1.21889 0.92936 1.01349 1.04460 1.26628 1.02106 1.11867 1.07623 0.79039 1.19264 0.97743 0.91387 0.96213 1.21576 0.93760 1.02455 0.90567 1.21552 1.00729 0.90269 1.00092 1.18028 1.00445 0.93505 0.85052 1.91498 1.87403 1.82417 1.50452 1.17966 1.02836 0.79597 0.97681 1.91467 1.91438 1.35043 1.94903 1.21224 1.02350 0.96795 0.96001 1.69743 1.14258 0.83484 0.85522 1.93001 1.82100 1.30113 1.85064 1.27535 1.07772 1.11261 1.08663 1.18656 0.96792 0.93737 0.91183 1.21697 1.27671 1.16514 0.91751 0.91457 1.26039 0.95996 0.96033 1.02086 1.70109 1.38124 1.29016 1.20224 0.85374 0.78440 0.78527 0.78554 1.18178 1.21265 1.19787 0.91002 0.89558 0.95330 0.78335 0.79528 0.86041 0.83739 0.91573 1.00935 0.95924 0.92704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 8.76 71.98 0.63 -2.60 16 2 C -0.37 -6.58 3.07 29.85 0.09 -6.49 16 3 H 0.19 1.31 7.87 -2.39 -0.02 1.29 16 4 C -0.04 -0.85 4.78 -19.86 -0.09 -0.94 16 5 C -0.07 -0.69 9.67 22.27 0.22 -0.48 16 6 C -0.11 -1.35 10.02 22.31 0.22 -1.13 16 7 C 0.05 1.09 7.31 22.41 0.16 1.25 16 8 F -0.14 -3.27 17.18 44.97 0.77 -2.50 16 9 C 0.04 1.09 7.31 22.41 0.16 1.25 16 10 F -0.15 -4.85 17.18 44.97 0.77 -4.08 16 11 C -0.14 -3.98 8.42 22.30 0.19 -3.79 16 12 S 1.27 36.25 12.60 -56.49 -0.71 35.54 16 13 O -0.91 -39.22 16.13 -148.98 -2.40 -41.62 16 14 C -0.41 -14.64 5.26 71.98 0.38 -14.26 16 15 C 0.03 1.76 4.98 29.85 0.15 1.91 16 16 C -0.54 -29.65 9.11 25.60 0.23 -29.42 16 17 H 0.07 3.49 7.74 -2.91 -0.02 3.46 16 18 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 19 N -0.93 -56.76 13.29 21.44 0.28 -56.48 16 20 Si 0.97 43.39 29.54 68.60 2.03 45.42 16 21 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 22 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 23 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 24 H 0.07 1.56 6.51 -2.39 -0.02 1.54 16 25 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.03 0.79 7.40 -2.39 -0.02 0.78 16 27 H 0.20 0.11 7.94 -2.91 -0.02 0.09 16 28 H 0.19 0.92 8.06 -2.91 -0.02 0.89 16 29 H 0.12 4.21 6.20 -2.91 -0.02 4.19 16 30 H 0.14 3.91 8.14 -2.39 -0.02 3.89 16 31 H 0.07 2.46 6.90 -2.39 -0.02 2.45 16 32 H -0.03 -1.67 8.14 -2.39 -0.02 -1.69 16 33 H 0.02 1.14 8.14 -2.38 -0.02 1.12 16 34 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -82.49 310.89 4.66 -77.82 By element: Atomic # 1 Polarization: -0.77 SS G_CDS: 1.12 Total: 0.35 kcal Atomic # 6 Polarization: -57.25 SS G_CDS: 2.80 Total: -54.44 kcal Atomic # 7 Polarization: -56.76 SS G_CDS: 0.28 Total: -56.48 kcal Atomic # 8 Polarization: -39.22 SS G_CDS: -2.40 Total: -41.62 kcal Atomic # 9 Polarization: -8.13 SS G_CDS: 1.55 Total: -6.58 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 16 Polarization: 36.25 SS G_CDS: -0.71 Total: 35.54 kcal Total: -82.49 4.66 -77.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190801901.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.850 kcal (2) G-P(sol) polarization free energy of solvation -82.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds