Wall clock time and date at job start Tue Mar 31 2020 05:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99913 * 2 1 4 4 H 1.48497 * 109.47050 * 270.00402 * 3 2 1 5 5 H 1.48504 * 109.46898 * 30.00058 * 3 2 1 6 6 H 1.48502 * 109.47197 * 150.00049 * 3 2 1 7 7 C 1.37875 * 120.00288 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00170 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99714 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.47299 * 179.97438 * 9 7 2 11 11 S 1.81395 * 109.47298 * 179.97438 * 10 9 7 12 12 O 1.42103 * 109.46918 * 296.38774 * 11 10 9 13 13 C 1.81401 * 103.00006 * 180.02562 * 11 10 9 14 14 C 1.50693 * 109.47312 * 180.02562 * 13 11 10 15 15 C 1.38233 * 120.00207 * 89.99480 * 14 13 11 16 16 C 1.38234 * 120.00037 * 179.72405 * 15 14 13 17 17 C 1.38235 * 120.00220 * 0.28719 * 16 15 14 18 18 C 1.50700 * 120.00273 * 179.97438 * 17 16 15 19 19 F 1.39898 * 109.47133 * 209.99844 * 18 17 16 20 20 F 1.39900 * 109.46794 * 329.99355 * 18 17 16 21 21 C 1.38238 * 119.99712 * 359.97124 * 17 16 15 22 22 C 1.38233 * 120.00012 * 359.96176 * 21 17 16 23 23 H 0.97005 * 120.00022 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.47444 * 59.99847 * 9 7 2 25 25 H 1.08996 * 109.47384 * 299.99876 * 9 7 2 26 26 H 1.09000 * 109.46395 * 59.99905 * 10 9 7 27 27 H 1.09004 * 109.46710 * 300.00333 * 10 9 7 28 28 H 1.09000 * 109.46926 * 60.00128 * 13 11 10 29 29 H 1.09001 * 109.46748 * 299.99932 * 13 11 10 30 30 H 1.08002 * 120.00157 * 0.02562 * 15 14 13 31 31 H 1.07999 * 120.00009 * 180.25939 * 16 15 14 32 32 H 1.08995 * 109.47498 * 89.99601 * 18 17 16 33 33 H 1.08002 * 119.99672 * 179.97438 * 21 17 16 34 34 H 1.08004 * 119.99493 * 180.02562 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 16 1.3384 -5.2330 -0.0034 12 8 0.5863 -5.3462 1.1970 13 6 2.6650 -6.4702 -0.0038 14 6 2.0635 -7.8518 -0.0050 15 6 1.7879 -8.4847 -1.2026 16 6 1.2414 -9.7544 -1.2037 17 6 0.9650 -10.3889 -0.0071 18 6 0.3686 -11.7729 -0.0082 19 9 -0.4243 -11.9400 1.1321 20 9 -0.4189 -11.9404 -1.1524 21 6 1.2356 -9.7539 1.1906 22 6 1.7834 -8.4848 1.1916 23 1 -0.4850 0.8401 0.0004 24 1 0.6247 -2.5563 -0.8920 25 1 0.6241 -2.5575 0.8880 26 1 2.8719 -3.6050 0.8873 27 1 2.8720 -3.6035 -0.8927 28 1 3.2811 -6.3425 0.8863 29 1 3.2812 -6.3418 -0.8937 30 1 2.0041 -7.9891 -2.1376 31 1 1.0300 -10.2505 -2.1394 32 1 1.1685 -12.5133 -0.0062 33 1 1.0192 -10.2495 2.1255 34 1 1.9952 -7.9889 2.1274 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190849300.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:18 Heat of formation + Delta-G solvation = -129.810271 kcal Electronic energy + Delta-G solvation = -19342.994380 eV Core-core repulsion = 15809.637060 eV Total energy + Delta-G solvation = -3533.357320 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.074 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.24702 -47.26590 -39.51993 -35.20650 -33.72056 -33.55430 -31.17893 -30.91932 -28.75052 -25.49864 -24.78848 -22.98513 -21.57730 -20.87273 -17.87586 -17.72431 -17.42531 -17.11006 -16.51641 -15.67270 -15.39378 -14.89269 -14.74109 -14.51749 -14.20412 -14.06274 -13.80956 -13.66324 -13.40929 -13.27436 -12.79846 -12.56459 -12.40831 -12.12753 -11.73405 -11.36296 -11.18616 -11.12301 -10.99602 -10.77118 -10.22677 -10.17766 -9.64638 -9.34219 -9.16619 -8.67005 -8.44196 -7.72089 -6.07017 -4.11595 0.80846 1.17166 1.98261 3.09724 3.27322 3.34031 3.36983 3.40128 3.54701 3.91021 4.17673 4.29832 4.40477 4.61738 4.64489 4.72812 4.77830 5.16801 5.21542 5.27950 5.44086 5.50409 5.75959 5.82376 5.90175 6.09042 6.10686 6.15395 6.37936 6.68703 6.76177 7.46071 7.57429 7.87774 8.28705 8.93119 9.52750 11.03553 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.046412 B = 0.002725 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.150282 B =10273.612050 C =10342.217578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.057 3.943 3 Si 0.896 3.104 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.520 4.520 8 H 0.057 0.943 9 C 0.038 3.962 10 C -0.417 4.417 11 S 1.225 4.775 12 O -0.842 6.842 13 C -0.425 4.425 14 C -0.033 4.033 15 C -0.119 4.119 16 C -0.083 4.083 17 C -0.182 4.182 18 C 0.316 3.684 19 F -0.201 7.201 20 F -0.200 7.200 21 C -0.081 4.081 22 C -0.115 4.115 23 H 0.263 0.737 24 H 0.029 0.971 25 H 0.023 0.977 26 H 0.072 0.928 27 H 0.106 0.894 28 H 0.093 0.907 29 H 0.126 0.874 30 H 0.139 0.861 31 H 0.133 0.867 32 H 0.120 0.880 33 H 0.130 0.870 34 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.810 -22.945 -4.982 23.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.075 0.925 9 C 0.000 4.000 10 C -0.557 4.557 11 S 1.426 4.574 12 O -0.837 6.837 13 C -0.558 4.558 14 C -0.034 4.034 15 C -0.138 4.138 16 C -0.101 4.101 17 C -0.183 4.183 18 C 0.262 3.738 19 F -0.182 7.182 20 F -0.181 7.181 21 C -0.099 4.099 22 C -0.134 4.134 23 H 0.073 0.927 24 H 0.047 0.953 25 H 0.041 0.959 26 H 0.091 0.909 27 H 0.124 0.876 28 H 0.112 0.888 29 H 0.144 0.856 30 H 0.156 0.844 31 H 0.151 0.849 32 H 0.137 0.863 33 H 0.148 0.852 34 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 3.647 -23.016 -4.945 23.822 hybrid contribution 1.749 1.248 1.914 2.877 sum 5.396 -21.768 -3.031 22.631 Atomic orbital electron populations 1.69960 1.06055 1.26917 1.50143 1.25049 0.94918 0.99363 0.95136 0.86538 0.79750 0.83208 0.78182 1.20446 1.21117 1.19946 1.21142 0.93004 0.90404 1.51414 0.92476 1.18794 0.92966 0.90130 0.98159 1.27629 1.09624 1.12353 1.06054 1.70639 0.87140 0.86868 1.12783 1.93107 1.55985 1.83886 1.50740 1.26948 1.15191 1.05567 1.08091 1.19368 0.96573 0.93982 0.93520 1.21089 1.00021 0.94800 0.97935 1.20889 0.97142 0.94995 0.97101 1.20371 1.06049 0.96415 0.95509 1.20281 0.86061 0.96373 0.71070 1.92999 1.77141 1.96596 1.51440 1.92994 1.77432 1.96595 1.51117 1.20866 0.96959 0.94880 0.97240 1.21106 0.99369 0.94626 0.98269 0.92733 0.95308 0.95875 0.90873 0.87557 0.88791 0.85584 0.84357 0.84890 0.86302 0.85203 0.85533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.04 0.96 4.98 -27.88 -0.14 0.82 16 10 C -0.42 -7.88 5.86 37.16 0.22 -7.67 16 11 S 1.23 19.03 13.14 -107.50 -1.41 17.61 16 12 O -0.84 -18.54 18.14 -35.23 -0.64 -19.18 16 13 C -0.43 -4.98 6.05 36.00 0.22 -4.77 16 14 C -0.03 -0.40 5.14 -104.63 -0.54 -0.93 16 15 C -0.12 -1.16 9.70 -39.58 -0.38 -1.54 16 16 C -0.08 -0.78 9.40 -39.58 -0.37 -1.15 16 17 C -0.18 -1.84 5.73 -104.62 -0.60 -2.44 16 18 C 0.32 2.68 5.65 36.01 0.20 2.88 16 19 F -0.20 -2.11 16.48 2.25 0.04 -2.07 16 20 F -0.20 -1.97 16.48 2.25 0.04 -1.93 16 21 C -0.08 -0.91 9.40 -39.58 -0.37 -1.28 16 22 C -0.11 -1.45 9.70 -39.58 -0.38 -1.84 16 23 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 24 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.07 1.44 8.14 -51.92 -0.42 1.02 16 27 H 0.11 1.69 8.14 -51.92 -0.42 1.27 16 28 H 0.09 1.16 8.09 -51.92 -0.42 0.74 16 29 H 0.13 1.06 8.08 -51.92 -0.42 0.64 16 30 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 31 H 0.13 0.96 7.60 -52.49 -0.40 0.56 16 32 H 0.12 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.13 1.26 7.60 -52.49 -0.40 0.86 16 34 H 0.13 1.64 8.06 -52.48 -0.42 1.22 16 LS Contribution 318.84 15.07 4.80 4.80 Total: -1.00 -36.19 318.84 -8.16 -44.34 By element: Atomic # 1 Polarization: 1.32 SS G_CDS: -4.14 Total: -2.82 kcal Atomic # 6 Polarization: -28.65 SS G_CDS: -2.56 Total: -31.21 kcal Atomic # 7 Polarization: -26.66 SS G_CDS: 0.74 Total: -25.92 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -0.64 Total: -19.18 kcal Atomic # 9 Polarization: -4.08 SS G_CDS: 0.07 Total: -4.00 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: 19.03 SS G_CDS: -1.41 Total: 17.61 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -36.19 -8.16 -44.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190849300.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.466 kcal (2) G-P(sol) polarization free energy of solvation -36.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds