Wall clock time and date at job start Tue Mar 31 2020 05:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99913 * 2 1 4 4 H 1.48497 * 109.47050 * 270.00402 * 3 2 1 5 5 H 1.48504 * 109.46898 * 30.00058 * 3 2 1 6 6 H 1.48502 * 109.47197 * 150.00049 * 3 2 1 7 7 C 1.37875 * 120.00288 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00170 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99714 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.47299 * 179.97438 * 9 7 2 11 11 S 1.81395 * 109.47298 * 179.97438 * 10 9 7 12 12 O 1.42103 * 109.46918 * 296.38774 * 11 10 9 13 13 C 1.81401 * 103.00006 * 180.02562 * 11 10 9 14 14 C 1.50693 * 109.47312 * 180.02562 * 13 11 10 15 15 C 1.38233 * 120.00207 * 89.99480 * 14 13 11 16 16 C 1.38234 * 120.00037 * 179.72405 * 15 14 13 17 17 C 1.38235 * 120.00220 * 0.28719 * 16 15 14 18 18 C 1.50700 * 120.00273 * 179.97438 * 17 16 15 19 19 F 1.39898 * 109.47133 * 209.99844 * 18 17 16 20 20 F 1.39900 * 109.46794 * 329.99355 * 18 17 16 21 21 C 1.38238 * 119.99712 * 359.97124 * 17 16 15 22 22 C 1.38233 * 120.00012 * 359.96176 * 21 17 16 23 23 H 0.97005 * 120.00022 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.47444 * 59.99847 * 9 7 2 25 25 H 1.08996 * 109.47384 * 299.99876 * 9 7 2 26 26 H 1.09000 * 109.46395 * 59.99905 * 10 9 7 27 27 H 1.09004 * 109.46710 * 300.00333 * 10 9 7 28 28 H 1.09000 * 109.46926 * 60.00128 * 13 11 10 29 29 H 1.09001 * 109.46748 * 299.99932 * 13 11 10 30 30 H 1.08002 * 120.00157 * 0.02562 * 15 14 13 31 31 H 1.07999 * 120.00009 * 180.25939 * 16 15 14 32 32 H 1.08995 * 109.47498 * 89.99601 * 18 17 16 33 33 H 1.08002 * 119.99672 * 179.97438 * 21 17 16 34 34 H 1.08004 * 119.99493 * 180.02562 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 16 1.3384 -5.2330 -0.0034 12 8 0.5863 -5.3462 1.1970 13 6 2.6650 -6.4702 -0.0038 14 6 2.0635 -7.8518 -0.0050 15 6 1.7879 -8.4847 -1.2026 16 6 1.2414 -9.7544 -1.2037 17 6 0.9650 -10.3889 -0.0071 18 6 0.3686 -11.7729 -0.0082 19 9 -0.4243 -11.9400 1.1321 20 9 -0.4189 -11.9404 -1.1524 21 6 1.2356 -9.7539 1.1906 22 6 1.7834 -8.4848 1.1916 23 1 -0.4850 0.8401 0.0004 24 1 0.6247 -2.5563 -0.8920 25 1 0.6241 -2.5575 0.8880 26 1 2.8719 -3.6050 0.8873 27 1 2.8720 -3.6035 -0.8927 28 1 3.2811 -6.3425 0.8863 29 1 3.2812 -6.3418 -0.8937 30 1 2.0041 -7.9891 -2.1376 31 1 1.0300 -10.2505 -2.1394 32 1 1.1685 -12.5133 -0.0062 33 1 1.0192 -10.2495 2.1255 34 1 1.9952 -7.9889 2.1274 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190849300.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:17 Heat of formation + Delta-G solvation = -153.553473 kcal Electronic energy + Delta-G solvation = -19344.023963 eV Core-core repulsion = 15809.637060 eV Total energy + Delta-G solvation = -3534.386903 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.074 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.96270 -47.99487 -40.32670 -36.76205 -35.73621 -34.41958 -32.87624 -31.97405 -29.61124 -27.37253 -25.72730 -23.78992 -23.22139 -21.93306 -18.80219 -18.62862 -18.40138 -18.24048 -18.14088 -16.71080 -16.46207 -16.30788 -16.20513 -15.64426 -15.55079 -15.05310 -14.82797 -14.59009 -14.40958 -14.24193 -14.07130 -13.97057 -13.44693 -13.40452 -13.03128 -12.95513 -12.73862 -12.60320 -12.03241 -12.00550 -11.92665 -11.84634 -11.52744 -11.01417 -10.60162 -9.97414 -9.79762 -9.04865 -8.22212 -6.35781 -0.09677 0.36227 0.79218 1.39357 1.41373 1.51882 1.82730 2.39403 2.60582 2.85343 2.91145 3.10006 3.28276 3.56659 3.70386 3.91714 3.99072 4.07324 4.27354 4.31080 4.43458 4.48737 4.65644 4.69713 4.91162 5.01994 5.04398 5.28612 5.36684 5.41918 5.50355 5.53450 5.76270 5.89862 6.16443 6.79589 7.33925 8.88789 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.046412 B = 0.002725 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.150282 B =10273.612050 C =10342.217578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.969 3.031 4 H -0.263 1.263 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.542 4.542 8 H 0.066 0.934 9 C 0.035 3.965 10 C -0.418 4.418 11 S 1.272 4.728 12 O -0.916 6.916 13 C -0.404 4.404 14 C -0.057 4.057 15 C -0.111 4.111 16 C -0.084 4.084 17 C -0.184 4.184 18 C 0.313 3.687 19 F -0.215 7.215 20 F -0.207 7.207 21 C -0.095 4.095 22 C -0.140 4.140 23 H 0.265 0.735 24 H 0.024 0.976 25 H -0.027 1.027 26 H 0.059 0.941 27 H 0.144 0.856 28 H 0.088 0.912 29 H 0.174 0.826 30 H 0.177 0.823 31 H 0.160 0.840 32 H 0.163 0.837 33 H 0.135 0.865 34 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.802 -24.161 -7.249 26.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.201 4.201 3 Si 0.793 3.207 4 H -0.187 1.187 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.581 4.581 8 H 0.084 0.916 9 C -0.003 4.003 10 C -0.556 4.556 11 S 1.475 4.525 12 O -0.912 6.912 13 C -0.541 4.541 14 C -0.059 4.059 15 C -0.130 4.130 16 C -0.102 4.102 17 C -0.185 4.185 18 C 0.260 3.740 19 F -0.196 7.196 20 F -0.188 7.188 21 C -0.113 4.113 22 C -0.160 4.160 23 H 0.074 0.926 24 H 0.043 0.957 25 H -0.009 1.009 26 H 0.078 0.922 27 H 0.162 0.838 28 H 0.107 0.893 29 H 0.192 0.808 30 H 0.194 0.806 31 H 0.178 0.822 32 H 0.180 0.820 33 H 0.153 0.847 34 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 5.629 -24.189 -7.211 25.861 hybrid contribution 1.155 1.420 2.598 3.178 sum 6.784 -22.769 -4.613 24.202 Atomic orbital electron populations 1.70105 1.07920 1.28019 1.51315 1.26061 0.95819 1.03617 0.94624 0.85391 0.78332 0.78053 0.78932 1.18745 1.21143 1.19043 1.21658 0.93705 0.91773 1.50946 0.91596 1.18655 0.93706 0.92458 0.95525 1.27547 1.08532 1.12296 1.07231 1.69695 0.87074 0.85374 1.10309 1.92993 1.60175 1.84901 1.53130 1.26726 1.13382 1.03642 1.10307 1.19473 0.98112 0.94086 0.94185 1.21534 0.98295 0.94802 0.98388 1.21285 0.96148 0.94956 0.97832 1.20661 1.05261 0.97217 0.95394 1.20692 0.86497 0.96604 0.70203 1.92972 1.77717 1.96621 1.52334 1.92979 1.77813 1.96579 1.51452 1.20970 0.97375 0.94638 0.98309 1.21196 1.00809 0.95668 0.98319 0.92591 0.95731 1.00884 0.92169 0.83770 0.89341 0.80807 0.80599 0.82219 0.81993 0.84746 0.87319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.30 13.29 21.45 0.28 -57.01 16 2 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 3 Si 0.97 43.92 29.54 68.60 2.03 45.95 16 4 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 5 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.54 -30.62 9.11 25.60 0.23 -30.39 16 8 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 9 C 0.03 1.82 4.98 29.85 0.15 1.97 16 10 C -0.42 -15.70 5.86 71.98 0.42 -15.28 16 11 S 1.27 39.15 13.14 -56.49 -0.74 38.41 16 12 O -0.92 -42.24 18.14 -148.98 -2.70 -44.94 16 13 C -0.40 -8.50 6.05 71.23 0.43 -8.07 16 14 C -0.06 -1.25 5.14 -19.87 -0.10 -1.35 16 15 C -0.11 -1.75 9.70 22.27 0.22 -1.53 16 16 C -0.08 -1.30 9.40 22.27 0.21 -1.09 16 17 C -0.18 -3.33 5.73 -19.87 -0.11 -3.44 16 18 C 0.31 4.55 5.65 71.24 0.40 4.96 16 19 F -0.22 -4.26 16.48 44.97 0.74 -3.52 16 20 F -0.21 -3.54 16.48 44.97 0.74 -2.80 16 21 C -0.09 -2.08 9.40 22.27 0.21 -1.87 16 22 C -0.14 -3.57 9.70 22.27 0.22 -3.36 16 23 H 0.27 15.24 8.31 -92.70 -0.77 14.47 16 24 H 0.02 1.27 8.14 -2.38 -0.02 1.25 16 25 H -0.03 -1.68 8.14 -2.39 -0.02 -1.70 16 26 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 27 H 0.14 4.22 8.14 -2.39 -0.02 4.20 16 28 H 0.09 2.05 8.09 -2.39 -0.02 2.03 16 29 H 0.17 2.02 8.08 -2.39 -0.02 2.00 16 30 H 0.18 1.36 8.06 -2.91 -0.02 1.34 16 31 H 0.16 1.60 7.60 -2.91 -0.02 1.57 16 32 H 0.16 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.13 2.65 7.60 -2.91 -0.02 2.63 16 34 H 0.11 3.02 8.06 -2.91 -0.02 3.00 16 Total: -1.00 -83.12 318.84 4.18 -78.94 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: 1.10 Total: 4.14 kcal Atomic # 6 Polarization: -61.89 SS G_CDS: 2.73 Total: -59.16 kcal Atomic # 7 Polarization: -57.30 SS G_CDS: 0.28 Total: -57.01 kcal Atomic # 8 Polarization: -42.24 SS G_CDS: -2.70 Total: -44.94 kcal Atomic # 9 Polarization: -7.80 SS G_CDS: 1.48 Total: -6.32 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: 39.15 SS G_CDS: -0.74 Total: 38.41 kcal Total: -83.12 4.18 -78.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190849300.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.617 kcal (2) G-P(sol) polarization free energy of solvation -83.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds