Wall clock time and date at job start Tue Mar 31 2020 05:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.46794 * 270.00201 * 3 2 1 5 5 H 1.48502 * 109.47140 * 30.00185 * 3 2 1 6 6 H 1.48501 * 109.46982 * 150.00298 * 3 2 1 7 7 C 1.37877 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00223 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 S 1.81404 * 109.46946 * 180.02562 * 10 9 7 12 12 O 1.42099 * 109.47018 * 63.61397 * 11 10 9 13 13 C 1.81397 * 103.00143 * 180.02562 * 11 10 9 14 14 C 1.50695 * 109.47452 * 180.02562 * 13 11 10 15 15 C 1.38239 * 119.99643 * 269.72723 * 14 13 11 16 16 C 1.38235 * 119.99506 * 179.74178 * 15 14 13 17 17 C 1.38231 * 120.00232 * 0.52816 * 16 15 14 18 18 C 1.50705 * 120.00386 * 179.76843 * 17 16 15 19 19 F 1.39901 * 109.47172 * 119.97645 * 18 17 16 20 20 F 1.39904 * 109.46972 * 239.98057 * 18 17 16 21 21 C 1.38241 * 120.00005 * 359.74815 * 17 16 15 22 22 C 1.38231 * 119.99675 * 359.97438 * 21 17 16 23 23 H 0.97000 * 119.99684 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 25 25 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 26 26 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 27 27 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 28 28 H 1.09007 * 109.46846 * 299.99983 * 13 11 10 29 29 H 1.09007 * 109.47453 * 59.99610 * 13 11 10 30 30 H 1.07995 * 120.00144 * 359.97438 * 15 14 13 31 31 H 1.07997 * 120.00258 * 180.29431 * 16 15 14 32 32 H 1.08998 * 109.46799 * 359.97438 * 18 17 16 33 33 H 1.07998 * 119.99904 * 179.97438 * 21 17 16 34 34 H 1.08002 * 119.99726 * 180.02562 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 16 5.8355 -2.6366 -0.0009 12 8 6.3091 -2.0412 1.1992 13 6 6.2436 -4.4041 -0.0016 14 6 7.7409 -4.5740 -0.0010 15 6 8.4275 -4.6571 -1.1979 16 6 9.8017 -4.8076 -1.1973 17 6 10.4879 -4.8860 0.0001 18 6 11.9854 -5.0553 0.0007 19 9 12.5768 -3.9728 0.6608 20 9 12.3201 -6.2430 0.6600 21 6 9.8006 -4.8087 1.1970 22 6 8.4271 -4.6525 1.1964 23 1 -0.4850 0.8401 0.0004 24 1 3.8752 -0.6804 0.8888 25 1 3.8745 -0.6801 -0.8911 26 1 3.6584 -3.1503 0.8892 27 1 3.6578 -3.1506 -0.8907 28 1 5.8246 -4.8740 0.8883 29 1 5.8246 -4.8735 -0.8917 30 1 7.8909 -4.6006 -2.1333 31 1 10.3387 -4.8677 -2.1323 32 1 12.3469 -5.0959 -1.0268 33 1 10.3367 -4.8704 2.1325 34 1 7.8902 -4.5917 2.1315 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190849315.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:19 Heat of formation + Delta-G solvation = -126.189584 kcal Electronic energy + Delta-G solvation = -19379.638590 eV Core-core repulsion = 15846.438275 eV Total energy + Delta-G solvation = -3533.200315 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.074 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.25311 -47.24230 -39.60693 -35.34787 -33.77445 -33.64235 -31.29638 -31.28804 -28.82581 -25.79261 -24.82073 -23.14232 -21.51038 -20.72236 -17.82528 -17.64841 -17.47318 -17.36243 -16.83212 -15.90276 -15.41543 -15.10128 -14.70023 -14.43547 -14.20014 -14.12381 -13.87791 -13.73101 -13.61973 -13.15783 -12.89354 -12.82484 -12.66211 -12.15096 -11.90136 -11.57032 -11.31221 -11.17136 -11.09322 -10.74244 -10.31330 -10.02300 -9.77140 -9.38911 -9.23916 -8.81377 -8.61963 -7.85601 -6.12276 -4.12128 0.71882 1.09857 1.85476 2.94373 3.26418 3.35275 3.40795 3.40905 3.42048 3.85381 4.04060 4.22690 4.39209 4.53935 4.61910 4.67741 4.75557 5.06837 5.13593 5.20839 5.33941 5.42284 5.68688 5.73461 5.77174 5.89891 6.00957 6.07962 6.29683 6.53531 6.60902 7.00009 7.14728 7.64753 8.43419 8.90413 9.48652 11.00652 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.040642 B = 0.002939 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.783344 B = 9525.261191 C = 9815.339143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.069 3.931 3 Si 0.874 3.126 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.263 1.263 7 C -0.520 4.520 8 H 0.073 0.927 9 C 0.004 3.996 10 C -0.409 4.409 11 S 1.220 4.780 12 O -0.842 6.842 13 C -0.422 4.422 14 C -0.032 4.032 15 C -0.121 4.121 16 C -0.082 4.082 17 C -0.182 4.182 18 C 0.314 3.686 19 F -0.200 7.200 20 F -0.202 7.202 21 C -0.074 4.074 22 C -0.115 4.115 23 H 0.265 0.735 24 H 0.022 0.978 25 H 0.024 0.976 26 H 0.079 0.921 27 H 0.112 0.888 28 H 0.096 0.904 29 H 0.128 0.872 30 H 0.140 0.860 31 H 0.132 0.868 32 H 0.118 0.882 33 H 0.127 0.873 34 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.337 -11.778 -6.401 26.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.700 3.300 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.559 4.559 8 H 0.091 0.909 9 C -0.035 4.035 10 C -0.549 4.549 11 S 1.421 4.579 12 O -0.838 6.838 13 C -0.555 4.555 14 C -0.033 4.033 15 C -0.140 4.140 16 C -0.100 4.100 17 C -0.183 4.183 18 C 0.261 3.739 19 F -0.182 7.182 20 F -0.183 7.183 21 C -0.092 4.092 22 C -0.134 4.134 23 H 0.075 0.925 24 H 0.040 0.960 25 H 0.042 0.958 26 H 0.097 0.903 27 H 0.130 0.870 28 H 0.114 0.886 29 H 0.146 0.854 30 H 0.157 0.843 31 H 0.150 0.850 32 H 0.135 0.865 33 H 0.145 0.855 34 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 22.835 -10.911 -6.331 26.088 hybrid contribution -0.645 -0.243 2.040 2.153 sum 22.190 -11.154 -4.291 25.203 Atomic orbital electron populations 1.69898 1.06288 1.27100 1.50588 1.25016 0.94781 0.99213 0.94334 0.86858 0.80680 0.83588 0.78853 1.19761 1.21101 1.18741 1.21017 0.88680 0.94625 1.51557 0.90853 1.19246 0.98215 0.88932 0.97132 1.27453 1.14399 1.06119 1.06904 1.70571 0.90058 0.84411 1.12865 1.93112 1.74815 1.65070 1.50787 1.26906 0.96612 1.23602 1.08412 1.19362 0.93658 0.96741 0.93529 1.21084 0.93821 1.01117 0.97955 1.20895 0.94514 0.97948 0.96662 1.20305 0.94090 1.08514 0.95391 1.20398 0.89280 0.71480 0.92787 1.93023 1.85387 1.55827 1.83913 1.93011 1.93493 1.47827 1.84003 1.20922 0.94304 0.96576 0.97429 1.21123 0.94038 0.99899 0.98308 0.92546 0.95956 0.95829 0.90254 0.86974 0.88570 0.85358 0.84254 0.84974 0.86473 0.85538 0.85506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.46 13.96 55.43 0.77 -26.69 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.87 21.46 27.47 -169.99 -4.67 16.79 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 7 C -0.52 -14.59 9.66 -34.44 -0.33 -14.92 16 8 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 9 C 0.00 0.08 4.05 -27.88 -0.11 -0.03 16 10 C -0.41 -7.30 5.86 37.16 0.22 -7.09 16 11 S 1.22 17.39 13.14 -107.50 -1.41 15.98 16 12 O -0.84 -17.36 18.14 -35.23 -0.64 -18.00 16 13 C -0.42 -4.62 6.05 36.00 0.22 -4.40 16 14 C -0.03 -0.35 5.14 -104.63 -0.54 -0.89 16 15 C -0.12 -1.04 9.70 -39.58 -0.38 -1.42 16 16 C -0.08 -0.65 9.67 -39.58 -0.38 -1.03 16 17 C -0.18 -1.75 5.37 -104.62 -0.56 -2.32 16 18 C 0.31 2.60 5.45 36.01 0.20 2.79 16 19 F -0.20 -2.10 17.26 2.25 0.04 -2.06 16 20 F -0.20 -2.01 17.26 2.25 0.04 -1.97 16 21 C -0.07 -0.84 9.60 -39.58 -0.38 -1.22 16 22 C -0.11 -1.42 9.70 -39.59 -0.38 -1.80 16 23 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 24 H 0.02 0.56 7.20 -51.93 -0.37 0.19 16 25 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 26 H 0.08 1.51 8.14 -51.92 -0.42 1.09 16 27 H 0.11 1.70 8.14 -51.92 -0.42 1.27 16 28 H 0.10 1.13 8.09 -51.92 -0.42 0.71 16 29 H 0.13 0.98 8.08 -51.92 -0.42 0.56 16 30 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 31 H 0.13 0.59 7.95 -52.49 -0.42 0.17 16 32 H 0.12 0.52 7.88 -51.93 -0.41 0.11 16 33 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 34 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 317.22 15.07 4.78 4.78 Total: -1.00 -36.80 317.22 -7.76 -44.56 By element: Atomic # 1 Polarization: 1.21 SS G_CDS: -4.13 Total: -2.93 kcal Atomic # 6 Polarization: -27.91 SS G_CDS: -2.54 Total: -30.45 kcal Atomic # 7 Polarization: -27.46 SS G_CDS: 0.77 Total: -26.69 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -0.64 Total: -18.00 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 0.08 Total: -4.04 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Atomic # 16 Polarization: 17.39 SS G_CDS: -1.41 Total: 15.98 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -36.80 -7.76 -44.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190849315.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.632 kcal (2) G-P(sol) polarization free energy of solvation -36.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds