Wall clock time and date at job start Tue Mar 31 2020 05:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.46794 * 270.00201 * 3 2 1 5 5 H 1.48502 * 109.47140 * 30.00185 * 3 2 1 6 6 H 1.48501 * 109.46982 * 150.00298 * 3 2 1 7 7 C 1.37877 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00223 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 S 1.81404 * 109.46946 * 180.02562 * 10 9 7 12 12 O 1.42099 * 109.47018 * 63.61397 * 11 10 9 13 13 C 1.81397 * 103.00143 * 180.02562 * 11 10 9 14 14 C 1.50695 * 109.47452 * 180.02562 * 13 11 10 15 15 C 1.38239 * 119.99643 * 269.72723 * 14 13 11 16 16 C 1.38235 * 119.99506 * 179.74178 * 15 14 13 17 17 C 1.38231 * 120.00232 * 0.52816 * 16 15 14 18 18 C 1.50705 * 120.00386 * 179.76843 * 17 16 15 19 19 F 1.39901 * 109.47172 * 119.97645 * 18 17 16 20 20 F 1.39904 * 109.46972 * 239.98057 * 18 17 16 21 21 C 1.38241 * 120.00005 * 359.74815 * 17 16 15 22 22 C 1.38231 * 119.99675 * 359.97438 * 21 17 16 23 23 H 0.97000 * 119.99684 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 25 25 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 26 26 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 27 27 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 28 28 H 1.09007 * 109.46846 * 299.99983 * 13 11 10 29 29 H 1.09007 * 109.47453 * 59.99610 * 13 11 10 30 30 H 1.07995 * 120.00144 * 359.97438 * 15 14 13 31 31 H 1.07997 * 120.00258 * 180.29431 * 16 15 14 32 32 H 1.08998 * 109.46799 * 359.97438 * 18 17 16 33 33 H 1.07998 * 119.99904 * 179.97438 * 21 17 16 34 34 H 1.08002 * 119.99726 * 180.02562 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 16 5.8355 -2.6366 -0.0009 12 8 6.3091 -2.0412 1.1992 13 6 6.2436 -4.4041 -0.0016 14 6 7.7409 -4.5740 -0.0010 15 6 8.4275 -4.6571 -1.1979 16 6 9.8017 -4.8076 -1.1973 17 6 10.4879 -4.8860 0.0001 18 6 11.9854 -5.0553 0.0007 19 9 12.5768 -3.9728 0.6608 20 9 12.3201 -6.2430 0.6600 21 6 9.8006 -4.8087 1.1970 22 6 8.4271 -4.6525 1.1964 23 1 -0.4850 0.8401 0.0004 24 1 3.8752 -0.6804 0.8888 25 1 3.8745 -0.6801 -0.8911 26 1 3.6584 -3.1503 0.8892 27 1 3.6578 -3.1506 -0.8907 28 1 5.8246 -4.8740 0.8883 29 1 5.8246 -4.8735 -0.8917 30 1 7.8909 -4.6006 -2.1333 31 1 10.3387 -4.8677 -2.1323 32 1 12.3469 -5.0959 -1.0268 33 1 10.3367 -4.8704 2.1325 34 1 7.8902 -4.5917 2.1315 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190849315.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:19 Heat of formation + Delta-G solvation = -151.329197 kcal Electronic energy + Delta-G solvation = -19380.728726 eV Core-core repulsion = 15846.438275 eV Total energy + Delta-G solvation = -3534.290451 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.074 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.94272 -47.95320 -40.34196 -36.79319 -35.71657 -34.44927 -33.25806 -32.02015 -29.62263 -27.59978 -25.67140 -23.86753 -22.87977 -21.94519 -19.21785 -18.54477 -18.35740 -18.21867 -18.16269 -16.78050 -16.54205 -16.29107 -16.03531 -15.68187 -15.48742 -15.18622 -14.91444 -14.67350 -14.50395 -14.34390 -14.23037 -13.81381 -13.65800 -13.52204 -13.05318 -12.89189 -12.75459 -12.46244 -12.07769 -12.03004 -11.86662 -11.77864 -11.55963 -11.10774 -10.79810 -9.97864 -9.85145 -9.09283 -8.33318 -6.38280 -0.11454 0.35931 0.76704 1.33216 1.37448 1.48691 1.76871 2.33463 2.64001 2.80477 2.87711 3.01724 3.29935 3.59630 3.66373 3.91639 4.02599 4.10962 4.21092 4.26643 4.38822 4.44138 4.62528 4.69586 4.83391 4.90577 5.02584 5.27127 5.30773 5.32947 5.35420 5.52355 5.57238 5.90260 6.22874 6.68881 7.26509 8.83002 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.040642 B = 0.002939 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.783344 B = 9525.261191 C = 9815.339143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.006 3.994 3 Si 0.940 3.060 4 H -0.244 1.244 5 H -0.285 1.285 6 H -0.260 1.260 7 C -0.531 4.531 8 H 0.037 0.963 9 C -0.001 4.001 10 C -0.419 4.419 11 S 1.285 4.715 12 O -0.912 6.912 13 C -0.407 4.407 14 C -0.055 4.055 15 C -0.112 4.112 16 C -0.073 4.073 17 C -0.188 4.188 18 C 0.309 3.691 19 F -0.217 7.217 20 F -0.215 7.215 21 C -0.098 4.098 22 C -0.143 4.143 23 H 0.268 0.732 24 H -0.002 1.002 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.142 0.858 28 H 0.084 0.916 29 H 0.176 0.824 30 H 0.183 0.817 31 H 0.180 0.820 32 H 0.169 0.831 33 H 0.118 0.882 34 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.839 -12.160 -9.695 29.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.191 4.191 3 Si 0.763 3.237 4 H -0.168 1.168 5 H -0.211 1.211 6 H -0.184 1.184 7 C -0.570 4.570 8 H 0.056 0.944 9 C -0.040 4.040 10 C -0.557 4.557 11 S 1.488 4.512 12 O -0.908 6.908 13 C -0.543 4.543 14 C -0.056 4.056 15 C -0.131 4.131 16 C -0.090 4.090 17 C -0.189 4.189 18 C 0.256 3.744 19 F -0.198 7.198 20 F -0.197 7.197 21 C -0.117 4.117 22 C -0.163 4.163 23 H 0.077 0.923 24 H 0.016 0.984 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.160 0.840 28 H 0.103 0.897 29 H 0.193 0.807 30 H 0.200 0.800 31 H 0.197 0.803 32 H 0.186 0.814 33 H 0.136 0.864 34 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 25.310 -11.266 -9.624 29.328 hybrid contribution -1.352 -0.341 3.065 3.367 sum 23.958 -11.608 -6.559 27.418 Atomic orbital electron populations 1.70048 1.08167 1.28282 1.52343 1.25991 0.95641 1.03430 0.94048 0.85810 0.79055 0.78538 0.80342 1.16784 1.21058 1.18417 1.21416 0.91509 0.93326 1.50732 0.94427 1.19194 0.95006 0.92673 0.97120 1.27504 1.18087 1.02734 1.07329 1.69659 0.85507 0.85922 1.10072 1.92994 1.75219 1.69285 1.53270 1.26758 0.97237 1.20034 1.10317 1.19484 0.93467 0.98443 0.94207 1.21623 0.94388 0.98755 0.98304 1.21459 0.94502 0.95438 0.97623 1.20649 0.95112 1.07700 0.95438 1.20953 0.88477 0.70356 0.94620 1.92990 1.85565 1.56721 1.84550 1.92984 1.93504 1.48602 1.84572 1.21002 0.94164 0.98034 0.98460 1.21147 0.94761 1.01920 0.98447 0.92335 0.98357 0.92971 0.92542 0.83966 0.89695 0.80678 0.79965 0.80265 0.81369 0.86380 0.87769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.31 13.96 21.45 0.30 -59.01 16 2 C 0.01 0.37 5.47 84.65 0.46 0.83 16 3 Si 0.94 44.17 27.47 68.60 1.88 46.06 16 4 H -0.24 -10.34 7.11 99.48 0.71 -9.63 16 5 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 6 H -0.26 -12.01 6.54 99.48 0.65 -11.36 16 7 C -0.53 -30.49 9.66 25.60 0.25 -30.24 16 8 H 0.04 2.34 7.99 -2.91 -0.02 2.32 16 9 C 0.00 -0.07 4.05 29.85 0.12 0.05 16 10 C -0.42 -14.68 5.86 71.98 0.42 -14.26 16 11 S 1.29 34.64 13.14 -56.49 -0.74 33.90 16 12 O -0.91 -38.02 18.14 -148.98 -2.70 -40.72 16 13 C -0.41 -7.86 6.05 71.23 0.43 -7.43 16 14 C -0.05 -1.09 5.14 -19.87 -0.10 -1.20 16 15 C -0.11 -1.38 9.70 22.27 0.22 -1.16 16 16 C -0.07 -0.79 9.67 22.27 0.22 -0.58 16 17 C -0.19 -3.15 5.37 -19.86 -0.11 -3.26 16 18 C 0.31 4.25 5.45 71.24 0.39 4.64 16 19 F -0.22 -4.24 17.26 44.97 0.78 -3.46 16 20 F -0.22 -3.95 17.26 44.97 0.78 -3.17 16 21 C -0.10 -2.24 9.60 22.27 0.21 -2.03 16 22 C -0.14 -3.60 9.70 22.27 0.22 -3.39 16 23 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 24 H 0.00 -0.10 7.20 -2.39 -0.02 -0.12 16 25 H 0.05 2.11 7.57 -2.39 -0.02 2.09 16 26 H 0.06 2.19 8.14 -2.39 -0.02 2.18 16 27 H 0.14 4.00 8.14 -2.39 -0.02 3.98 16 28 H 0.08 1.92 8.09 -2.39 -0.02 1.90 16 29 H 0.18 1.76 8.08 -2.39 -0.02 1.74 16 30 H 0.18 0.65 8.06 -2.91 -0.02 0.63 16 31 H 0.18 0.27 7.95 -2.91 -0.02 0.25 16 32 H 0.17 0.61 7.88 -2.39 -0.02 0.59 16 33 H 0.12 2.69 8.06 -2.91 -0.02 2.67 16 34 H 0.10 2.93 8.06 -2.91 -0.02 2.90 16 Total: -1.00 -86.09 317.22 4.06 -82.03 By element: Atomic # 1 Polarization: 1.34 SS G_CDS: 1.05 Total: 2.39 kcal Atomic # 6 Polarization: -60.74 SS G_CDS: 2.73 Total: -58.02 kcal Atomic # 7 Polarization: -59.31 SS G_CDS: 0.30 Total: -59.01 kcal Atomic # 8 Polarization: -38.02 SS G_CDS: -2.70 Total: -40.72 kcal Atomic # 9 Polarization: -8.18 SS G_CDS: 1.55 Total: -6.63 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.88 Total: 46.06 kcal Atomic # 16 Polarization: 34.64 SS G_CDS: -0.74 Total: 33.90 kcal Total: -86.09 4.06 -82.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190849315.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.304 kcal (2) G-P(sol) polarization free energy of solvation -86.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds