Wall clock time and date at job start Tue Mar 31 2020 05:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00160 * 2 1 4 4 H 1.48507 * 109.47127 * 240.00062 * 3 2 1 5 5 H 1.48496 * 109.47083 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47295 * 120.00162 * 3 2 1 7 7 C 1.37876 * 119.99539 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99666 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00613 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47292 * 180.02562 * 9 7 2 11 11 S 1.81406 * 109.46764 * 180.02562 * 10 9 7 12 12 C 1.81399 * 102.99611 * 179.97438 * 11 10 9 13 13 C 1.50708 * 109.47091 * 180.02562 * 12 11 10 14 14 C 1.38163 * 120.02715 * 270.02510 * 13 12 11 15 15 C 1.38243 * 120.05438 * 179.97438 * 14 13 12 16 16 C 1.38289 * 120.11362 * 359.97438 * 15 14 13 17 17 C 1.38125 * 120.05159 * 0.02562 * 16 15 14 18 18 C 1.38708 * 120.02785 * 90.00021 * 13 12 11 19 19 O 1.35899 * 120.05461 * 359.97438 * 18 13 12 20 20 C 1.42903 * 116.99930 * 180.02562 * 19 18 13 21 21 F 1.39895 * 109.47392 * 300.00490 * 20 19 18 22 22 F 1.39899 * 109.46826 * 60.00682 * 20 19 18 23 23 H 0.96999 * 119.99817 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.46674 * 59.99891 * 9 7 2 25 25 H 1.09005 * 109.46571 * 300.00653 * 9 7 2 26 26 H 1.08995 * 109.47229 * 60.00334 * 10 9 7 27 27 H 1.08998 * 109.46965 * 300.00005 * 10 9 7 28 28 H 1.08999 * 109.47342 * 60.00199 * 12 11 10 29 29 H 1.09000 * 109.47294 * 300.00116 * 12 11 10 30 30 H 1.08001 * 119.97024 * 359.97438 * 14 13 12 31 31 H 1.08004 * 119.94070 * 180.02562 * 15 14 13 32 32 H 1.07993 * 119.96940 * 180.28495 * 16 15 14 33 33 H 1.08000 * 120.02364 * 180.02562 * 17 16 15 34 34 H 1.08998 * 109.46876 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 16 1.3381 -5.2331 -0.0013 12 6 2.6647 -6.4702 -0.0020 13 6 2.0631 -7.8520 -0.0033 14 6 1.7863 -8.4867 1.1923 15 6 1.2339 -9.7540 1.1917 16 6 0.9565 -10.3894 -0.0048 17 6 1.2314 -9.7591 -1.2027 18 6 1.7863 -8.4874 -1.2048 19 8 2.0567 -7.8648 -2.3821 20 6 1.7451 -8.5787 -3.5802 21 9 2.4701 -9.7748 -3.6122 22 9 0.3756 -8.8625 -3.6110 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6246 -2.5570 0.8897 26 1 2.8718 -3.6044 0.8894 27 1 2.8718 -3.6044 -0.8905 28 1 3.2809 -6.3427 0.8880 29 1 3.2809 -6.3418 -0.8919 30 1 2.0017 -7.9923 2.1280 31 1 1.0179 -10.2482 2.1274 32 1 0.5208 -11.3775 -0.0025 33 1 1.0142 -10.2556 -2.1369 34 1 2.0092 -7.9700 -4.4449 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190891674.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:12 Heat of formation + Delta-G solvation = -136.117454 kcal Electronic energy + Delta-G solvation = -19790.861431 eV Core-core repulsion = 16257.230611 eV Total energy + Delta-G solvation = -3533.630820 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.074 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.55942 -47.54206 -40.22525 -37.58246 -33.66163 -32.94416 -30.83639 -30.45172 -27.27944 -26.21974 -25.17530 -22.67217 -21.99806 -20.92977 -19.07918 -18.24419 -18.11591 -16.50334 -16.36221 -16.15381 -15.51086 -15.15745 -14.75582 -14.49582 -14.25147 -14.08090 -13.88257 -13.81374 -13.53731 -13.23483 -13.06313 -12.76099 -12.53314 -12.22921 -11.89501 -11.49730 -11.44456 -11.12496 -10.99657 -10.62217 -10.16352 -9.68540 -9.62209 -9.03836 -8.90745 -8.42135 -8.40456 -7.07506 -6.04402 -4.09102 1.00887 1.19400 2.37339 2.39606 3.25107 3.27428 3.31054 3.35876 3.38438 3.65221 4.09913 4.42757 4.43827 4.51500 4.63860 4.85401 5.01951 5.11049 5.30889 5.34918 5.41839 5.64646 5.86859 6.02853 6.05833 6.19665 6.21694 6.34939 6.46952 6.75957 6.92034 7.58538 7.67864 7.92005 8.29291 8.95746 9.54580 11.06358 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.024021 B = 0.003375 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.380601 B = 8294.749146 C = 8946.759898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.038 3.962 10 C -0.061 4.061 11 S -0.273 6.273 12 C -0.047 4.047 13 C -0.076 4.076 14 C -0.072 4.072 15 C -0.144 4.144 16 C -0.085 4.085 17 C -0.192 4.192 18 C 0.120 3.880 19 O -0.309 6.309 20 C 0.411 3.589 21 F -0.202 7.202 22 F -0.197 7.197 23 H 0.263 0.737 24 H 0.026 0.974 25 H 0.026 0.974 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.135 0.865 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.133 0.867 34 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.574 -21.863 -3.664 22.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.075 0.925 9 C -0.001 4.001 10 C -0.209 4.209 11 S -0.043 6.043 12 C -0.195 4.195 13 C -0.078 4.078 14 C -0.091 4.091 15 C -0.162 4.162 16 C -0.104 4.104 17 C -0.210 4.210 18 C 0.075 3.925 19 O -0.226 6.226 20 C 0.320 3.680 21 F -0.184 7.184 22 F -0.179 7.179 23 H 0.073 0.927 24 H 0.044 0.956 25 H 0.044 0.956 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.105 0.895 29 H 0.107 0.893 30 H 0.153 0.847 31 H 0.145 0.855 32 H 0.145 0.855 33 H 0.150 0.850 34 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 3.396 -21.728 -3.704 22.301 hybrid contribution 1.564 0.821 -0.149 1.773 sum 4.960 -20.906 -3.853 21.829 Atomic orbital electron populations 1.69967 1.06074 1.26953 1.49941 1.25010 0.94887 0.99265 0.95062 0.86583 0.79522 0.82808 0.78655 1.20165 1.21169 1.20157 1.21069 0.92958 0.90306 1.51845 0.92522 1.18892 0.93410 0.89227 0.98525 1.23697 1.01468 0.92673 1.03061 1.87160 1.16599 1.02537 1.98027 1.22073 0.99290 0.92762 1.05345 1.18703 1.03431 0.95158 0.90524 1.20955 0.96758 0.94511 0.96906 1.21108 1.01344 0.95489 0.98238 1.20935 0.98138 0.99666 0.91656 1.21475 1.04558 0.94654 1.00351 1.18625 0.97459 0.91803 0.84632 1.86700 1.79723 1.43728 1.12441 1.23411 0.73533 0.80408 0.90616 1.93081 1.77833 1.50845 1.96660 1.93101 1.34036 1.94167 1.96621 0.92734 0.95550 0.95567 0.91438 0.91428 0.89510 0.89324 0.84695 0.85461 0.85514 0.84970 0.80161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.83 13.29 55.43 0.74 -26.10 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -14.72 9.11 -34.44 -0.31 -15.03 16 8 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 9 C 0.04 1.01 4.98 -27.88 -0.14 0.87 16 10 C -0.06 -1.30 5.88 37.16 0.22 -1.08 16 11 S -0.27 -5.25 21.72 -107.50 -2.33 -7.58 16 12 C -0.05 -0.70 5.85 36.01 0.21 -0.49 16 13 C -0.08 -1.06 5.15 -104.47 -0.54 -1.60 16 14 C -0.07 -0.86 9.70 -39.61 -0.38 -1.24 16 15 C -0.14 -1.50 10.04 -39.56 -0.40 -1.89 16 16 C -0.09 -0.89 10.04 -39.60 -0.40 -1.29 16 17 C -0.19 -2.32 8.26 -39.43 -0.33 -2.65 16 18 C 0.12 1.64 6.45 -39.22 -0.25 1.39 16 19 O -0.31 -4.00 9.48 -19.42 -0.18 -4.18 16 20 C 0.41 3.86 5.98 101.05 0.60 4.46 16 21 F -0.20 -2.00 15.58 2.25 0.04 -1.96 16 22 F -0.20 -2.19 15.58 2.25 0.04 -2.16 16 23 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 24 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 27 H 0.07 1.38 8.14 -51.92 -0.42 0.96 16 28 H 0.09 1.15 8.09 -51.92 -0.42 0.73 16 29 H 0.09 1.29 7.53 -51.92 -0.39 0.90 16 30 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 31 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 32 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.13 1.48 5.10 -52.49 -0.27 1.21 16 34 H 0.18 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 315.05 15.07 4.75 4.75 Total: -1.00 -32.23 315.05 -7.80 -40.03 By element: Atomic # 1 Polarization: 1.72 SS G_CDS: -4.00 Total: -2.28 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: -1.81 Total: -16.95 kcal Atomic # 7 Polarization: -26.83 SS G_CDS: 0.74 Total: -26.10 kcal Atomic # 8 Polarization: -4.00 SS G_CDS: -0.18 Total: -4.18 kcal Atomic # 9 Polarization: -4.19 SS G_CDS: 0.07 Total: -4.12 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -5.25 SS G_CDS: -2.33 Total: -7.58 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.23 -7.80 -40.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190891674.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.091 kcal (2) G-P(sol) polarization free energy of solvation -32.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds