Wall clock time and date at job start Tue Mar 31 2020 05:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00160 * 2 1 4 4 H 1.48507 * 109.47127 * 240.00062 * 3 2 1 5 5 H 1.48496 * 109.47083 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47295 * 120.00162 * 3 2 1 7 7 C 1.37876 * 119.99539 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99666 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00613 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47292 * 180.02562 * 9 7 2 11 11 S 1.81406 * 109.46764 * 180.02562 * 10 9 7 12 12 C 1.81399 * 102.99611 * 179.97438 * 11 10 9 13 13 C 1.50708 * 109.47091 * 180.02562 * 12 11 10 14 14 C 1.38163 * 120.02715 * 270.02510 * 13 12 11 15 15 C 1.38243 * 120.05438 * 179.97438 * 14 13 12 16 16 C 1.38289 * 120.11362 * 359.97438 * 15 14 13 17 17 C 1.38125 * 120.05159 * 0.02562 * 16 15 14 18 18 C 1.38708 * 120.02785 * 90.00021 * 13 12 11 19 19 O 1.35899 * 120.05461 * 359.97438 * 18 13 12 20 20 C 1.42903 * 116.99930 * 180.02562 * 19 18 13 21 21 F 1.39895 * 109.47392 * 300.00490 * 20 19 18 22 22 F 1.39899 * 109.46826 * 60.00682 * 20 19 18 23 23 H 0.96999 * 119.99817 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.46674 * 59.99891 * 9 7 2 25 25 H 1.09005 * 109.46571 * 300.00653 * 9 7 2 26 26 H 1.08995 * 109.47229 * 60.00334 * 10 9 7 27 27 H 1.08998 * 109.46965 * 300.00005 * 10 9 7 28 28 H 1.08999 * 109.47342 * 60.00199 * 12 11 10 29 29 H 1.09000 * 109.47294 * 300.00116 * 12 11 10 30 30 H 1.08001 * 119.97024 * 359.97438 * 14 13 12 31 31 H 1.08004 * 119.94070 * 180.02562 * 15 14 13 32 32 H 1.07993 * 119.96940 * 180.28495 * 16 15 14 33 33 H 1.08000 * 120.02364 * 180.02562 * 17 16 15 34 34 H 1.08998 * 109.46876 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 16 1.3381 -5.2331 -0.0013 12 6 2.6647 -6.4702 -0.0020 13 6 2.0631 -7.8520 -0.0033 14 6 1.7863 -8.4867 1.1923 15 6 1.2339 -9.7540 1.1917 16 6 0.9565 -10.3894 -0.0048 17 6 1.2314 -9.7591 -1.2027 18 6 1.7863 -8.4874 -1.2048 19 8 2.0567 -7.8648 -2.3821 20 6 1.7451 -8.5787 -3.5802 21 9 2.4701 -9.7748 -3.6122 22 9 0.3756 -8.8625 -3.6110 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6246 -2.5570 0.8897 26 1 2.8718 -3.6044 0.8894 27 1 2.8718 -3.6044 -0.8905 28 1 3.2809 -6.3427 0.8880 29 1 3.2809 -6.3418 -0.8919 30 1 2.0017 -7.9923 2.1280 31 1 1.0179 -10.2482 2.1274 32 1 0.5208 -11.3775 -0.0025 33 1 1.0142 -10.2556 -2.1369 34 1 2.0092 -7.9700 -4.4449 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190891674.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:12 Heat of formation + Delta-G solvation = -153.929695 kcal Electronic energy + Delta-G solvation = -19791.633828 eV Core-core repulsion = 16257.230611 eV Total energy + Delta-G solvation = -3534.403217 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.074 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.33448 -48.32521 -41.12173 -38.45920 -35.77002 -33.92483 -32.89806 -31.32170 -28.34310 -27.25881 -26.96519 -23.59509 -23.32465 -22.49042 -19.92977 -19.03525 -18.90906 -18.66336 -17.29764 -17.16738 -16.72696 -16.51272 -16.08291 -15.77179 -15.54394 -15.18272 -14.98136 -14.79620 -14.64049 -14.45148 -14.12319 -13.85178 -13.76277 -13.52048 -13.41140 -12.90375 -12.88615 -12.51735 -12.32239 -12.14196 -12.00279 -11.66098 -11.39511 -10.83535 -10.59644 -9.87325 -9.37604 -8.61252 -8.22303 -6.36393 -0.00929 0.30299 1.04693 1.41721 1.45022 1.53261 1.62619 1.79025 2.41236 2.51820 2.74393 3.10701 3.46726 3.57118 3.68933 3.72184 3.98879 4.13395 4.24310 4.27465 4.39562 4.42060 4.47912 4.67017 4.87563 4.93090 5.17840 5.35059 5.38213 5.47928 5.49926 5.60286 5.74042 6.03994 6.11405 6.77728 7.33169 8.89321 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.024021 B = 0.003375 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.380601 B = 8294.749146 C = 8946.759898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.973 3.027 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.544 4.544 8 H 0.068 0.932 9 C 0.045 3.955 10 C -0.049 4.049 11 S -0.309 6.309 12 C -0.026 4.026 13 C -0.105 4.105 14 C -0.076 4.076 15 C -0.142 4.142 16 C -0.080 4.080 17 C -0.205 4.205 18 C 0.104 3.896 19 O -0.328 6.328 20 C 0.406 3.594 21 F -0.205 7.205 22 F -0.209 7.209 23 H 0.266 0.734 24 H -0.006 1.006 25 H -0.004 1.004 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.104 0.896 29 H 0.090 0.910 30 H 0.147 0.853 31 H 0.158 0.842 32 H 0.157 0.843 33 H 0.137 0.863 34 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.912 -22.861 -3.412 23.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.796 3.204 4 H -0.189 1.189 5 H -0.209 1.209 6 H -0.189 1.189 7 C -0.583 4.583 8 H 0.086 0.914 9 C 0.007 3.993 10 C -0.197 4.197 11 S -0.079 6.079 12 C -0.173 4.173 13 C -0.107 4.107 14 C -0.096 4.096 15 C -0.160 4.160 16 C -0.099 4.099 17 C -0.224 4.224 18 C 0.059 3.941 19 O -0.246 6.246 20 C 0.317 3.683 21 F -0.187 7.187 22 F -0.191 7.191 23 H 0.074 0.926 24 H 0.013 0.987 25 H 0.014 0.986 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.122 0.878 29 H 0.109 0.891 30 H 0.165 0.835 31 H 0.176 0.824 32 H 0.174 0.826 33 H 0.154 0.846 34 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 4.746 -22.730 -3.456 23.476 hybrid contribution 1.104 0.939 -0.236 1.468 sum 5.850 -21.791 -3.691 22.863 Atomic orbital electron populations 1.70118 1.08029 1.28128 1.50908 1.26035 0.95773 1.03564 0.94298 0.85389 0.78158 0.77463 0.79366 1.18927 1.20852 1.18887 1.21530 0.93723 0.91348 1.51713 0.91395 1.18665 0.93685 0.91493 0.95468 1.23327 1.00151 0.92379 1.03847 1.87222 1.19503 1.03005 1.98146 1.22045 0.97361 0.91615 1.06249 1.18782 1.05497 0.94811 0.91594 1.21241 0.96333 0.95266 0.96764 1.21480 1.00139 0.94851 0.99557 1.21370 0.96752 1.00700 0.91070 1.21672 1.04885 0.94408 1.01392 1.18891 0.97804 0.92506 0.84945 1.86670 1.79920 1.44847 1.13132 1.24147 0.72833 0.80694 0.90650 1.93067 1.77808 1.51257 1.96600 1.93073 1.35149 1.94289 1.96604 0.92566 0.98743 0.98597 0.90382 0.90719 0.87805 0.89149 0.83483 0.82421 0.82566 0.84557 0.75796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.47 13.29 21.45 0.28 -57.18 16 2 C 0.00 0.10 5.46 84.65 0.46 0.56 16 3 Si 0.97 43.91 29.54 68.60 2.03 45.94 16 4 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 7 C -0.54 -31.05 9.11 25.60 0.23 -30.81 16 8 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 9 C 0.05 2.48 4.98 29.85 0.15 2.63 16 10 C -0.05 -2.12 5.88 71.98 0.42 -1.70 16 11 S -0.31 -11.99 21.72 -56.49 -1.23 -13.22 16 12 C -0.03 -0.74 5.85 71.24 0.42 -0.32 16 13 C -0.10 -2.82 5.15 -19.77 -0.10 -2.92 16 14 C -0.08 -1.69 9.70 22.25 0.22 -1.48 16 15 C -0.14 -2.57 10.04 22.28 0.22 -2.35 16 16 C -0.08 -1.48 10.04 22.25 0.22 -1.26 16 17 C -0.21 -4.69 8.26 22.36 0.18 -4.51 16 18 C 0.10 2.76 6.45 22.50 0.15 2.91 16 19 O -0.33 -8.32 9.48 -92.41 -0.88 -9.19 16 20 C 0.41 7.21 5.98 113.37 0.68 7.88 16 21 F -0.21 -3.84 15.58 44.97 0.70 -3.14 16 22 F -0.21 -4.52 15.58 44.97 0.70 -3.82 16 23 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 24 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 25 H 0.00 -0.26 8.14 -2.38 -0.02 -0.28 16 26 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 27 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 28 H 0.10 2.60 8.09 -2.39 -0.02 2.59 16 29 H 0.09 2.56 7.53 -2.39 -0.02 2.54 16 30 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 31 H 0.16 1.85 8.06 -2.91 -0.02 1.82 16 32 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 33 H 0.14 2.91 5.10 -2.91 -0.01 2.90 16 34 H 0.23 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -71.16 315.05 5.97 -65.19 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: 1.11 Total: 6.79 kcal Atomic # 6 Polarization: -34.62 SS G_CDS: 3.25 Total: -31.36 kcal Atomic # 7 Polarization: -57.47 SS G_CDS: 0.28 Total: -57.18 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: -0.88 Total: -9.19 kcal Atomic # 9 Polarization: -8.36 SS G_CDS: 1.40 Total: -6.96 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: -11.99 SS G_CDS: -1.23 Total: -13.22 kcal Total: -71.16 5.97 -65.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190891674.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.738 kcal (2) G-P(sol) polarization free energy of solvation -71.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds